Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11e10
(643 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 229 2e-60
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 223 8e-59
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 223 8e-59
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 216 9e-57
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 43 2e-04
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 42 5e-04
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 32 0.28
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 30 1.1
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 30 1.5
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 30 1.5
At2g40820.1 68415.m05038 proline-rich family protein contains pr... 29 2.6
At1g32190.1 68414.m03959 expressed protein 29 2.6
At2g39050.1 68415.m04800 hydroxyproline-rich glycoprotein family... 29 3.5
At4g34990.1 68417.m04961 myb family transcription factor (MYB32)... 28 4.6
At2g41670.1 68415.m05148 GTP-binding family protein contains Pfa... 28 6.1
At1g64140.1 68414.m07266 expressed protein similar to putative d... 28 6.1
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 27 8.0
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 27 8.0
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 27 8.0
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 27 8.0
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 27 8.0
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 229 bits (559), Expect = 2e-60
Identities = 113/147 (76%), Positives = 125/147 (85%), Gaps = 1/147 (0%)
Frame = +1
Query: 202 LHQQDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELE 381
L +QDL KLDVT L LSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELE
Sbjct: 7 LAEQDLKKLDVTVLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELE 66
Query: 382 RNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDDSFPCLRPAC-TGRFQLVRHVSFV 558
RNITIKLGYANAKIY+C++ KCPRP + + GS K+D+ C P + +L+RHVSFV
Sbjct: 67 RNITIKLGYANAKIYKCEDEKCPRPMCYKAYGSGKEDTPNCDVPGFENSKMKLLRHVSFV 126
Query: 559 DCPGHDILMATMLNGAAVMDAALLLIA 639
DCPGHDILMATMLNGAA+MD ALLLIA
Sbjct: 127 DCPGHDILMATMLNGAAIMDGALLLIA 153
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 223 bits (545), Expect = 8e-59
Identities = 111/147 (75%), Positives = 123/147 (83%), Gaps = 1/147 (0%)
Frame = +1
Query: 202 LHQQDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELE 381
L +QDL+KLDVTKL L PEVISRQATINIGTIGHVAHGKST+VKAISGVQTVRFKNELE
Sbjct: 13 LAEQDLTKLDVTKLHPLFPEVISRQATINIGTIGHVAHGKSTIVKAISGVQTVRFKNELE 72
Query: 382 RNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDDSFPCLRPACTG-RFQLVRHVSFV 558
RNITIKLGYANAKIY+C++ KCPRP + S GS K+D+ C P + L RHVS V
Sbjct: 73 RNITIKLGYANAKIYKCEDDKCPRPMCYKSYGSGKEDNPTCDVPGFENCKMTLRRHVSCV 132
Query: 559 DCPGHDILMATMLNGAAVMDAALLLIA 639
DCPGHDILMATMLNGAA++D ALLLIA
Sbjct: 133 DCPGHDILMATMLNGAAIVDGALLLIA 159
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 223 bits (545), Expect = 8e-59
Identities = 111/147 (75%), Positives = 123/147 (83%), Gaps = 1/147 (0%)
Frame = +1
Query: 202 LHQQDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELE 381
L +QDL+KLDVTKL L PEVISRQATINIGTIGHVAHGKST+VKAISGVQTVRFKNELE
Sbjct: 13 LAEQDLTKLDVTKLHPLFPEVISRQATINIGTIGHVAHGKSTIVKAISGVQTVRFKNELE 72
Query: 382 RNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDDSFPCLRPACTG-RFQLVRHVSFV 558
RNITIKLGYANAKIY+C++ KCPRP + S GS K+D+ C P + L RHVS V
Sbjct: 73 RNITIKLGYANAKIYKCEDDKCPRPMCYKSYGSGKEDNPTCDVPGFENCKMTLRRHVSCV 132
Query: 559 DCPGHDILMATMLNGAAVMDAALLLIA 639
DCPGHDILMATMLNGAA++D ALLLIA
Sbjct: 133 DCPGHDILMATMLNGAAIVDGALLLIA 159
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 216 bits (528), Expect = 9e-57
Identities = 107/147 (72%), Positives = 125/147 (85%), Gaps = 1/147 (0%)
Frame = +1
Query: 202 LHQQDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELE 381
L +QDLSKLDV +L LSPEVISRQATINIGTIGHVAHGKST+VKA+SGV TV+FK+ELE
Sbjct: 7 LAEQDLSKLDVAQLHPLSPEVISRQATINIGTIGHVAHGKSTIVKAVSGVHTVKFKSELE 66
Query: 382 RNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDDSFPC-LRPACTGRFQLVRHVSFV 558
RNITIKLGYANAKIY+C+ KCPRP ++ S GS K+D+ C + + +L+RHVSFV
Sbjct: 67 RNITIKLGYANAKIYKCE--KCPRPVAYKSFGSGKEDNPSCDVSGHEKYKMKLLRHVSFV 124
Query: 559 DCPGHDILMATMLNGAAVMDAALLLIA 639
DCPGHDILMATMLNGAA+MD ALL+IA
Sbjct: 125 DCPGHDILMATMLNGAAIMDGALLIIA 151
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +1
Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAG 642
RH + VDCPGH + M+ GAA MD A+L+++G
Sbjct: 142 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSG 175
Score = 34.7 bits (76), Expect = 0.053
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +1
Query: 283 INIGTIGHVAHGKSTVVKAIS 345
+NIGTIGHV HGK+T+ A++
Sbjct: 80 VNIGTIGHVDHGKTTLTAALT 100
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +1
Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAG 642
RH + VDCPGH + M+ GAA MD +L+++G
Sbjct: 130 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSG 163
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +1
Query: 283 INIGTIGHVAHGKSTVVKAISGV 351
+N+GTIGHV HGK+T+ AI+ V
Sbjct: 68 VNVGTIGHVDHGKTTLTAAITKV 90
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 544 HVSFVDCPGHDILMATMLNGAAVMDAALLLI 636
HV +D PGH + M+ GA DAA+L+I
Sbjct: 318 HVVLLDSPGHKDFVPNMIAGATQADAAILVI 348
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 553 FVDCPGHDILMATMLNGAAVMDAALLLIA 639
F+D PGH+ A GA V D A++++A
Sbjct: 556 FLDTPGHEAFGAMRARGARVTDIAIIVVA 584
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Frame = +1
Query: 286 NIGTIGHVAHGKSTVV-KAISGVQTVRFKN-----------ELERNITIKLGYANAKIYQ 429
N I H+ HGKST+ K + TV+ ++ E ER ITIKL A +
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDMKEQFLDNMDLERERGITIKLQAARMRYVY 147
Query: 430 CDNPKC 447
D P C
Sbjct: 148 EDTPFC 153
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 547 VSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
++F+D PGH GAAV D +L++A
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVA 300
>At2g40820.1 68415.m05038 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 903
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 364 FKNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDDS 495
F++E ERN I L A Y C+ K RPT +S K S
Sbjct: 495 FESEQERNAAIVL--ARTYAYDCNVSKIHRPTEILSSREFKSKS 536
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Frame = +1
Query: 430 CDNPKCPRPTSFISGGSSKDDSFPCLRPACTGRFQLVRHVSFVD---CP 567
C P+CP+P+ G F C P G F + S V CP
Sbjct: 307 CPKPRCPKPSCSCGCGCGDCGCFKCSCPTLKGCFSCCKKPSCVSSCCCP 355
>At2g39050.1 68415.m04800 hydroxyproline-rich glycoprotein family
protein contains QXW lectin repeat domain, Pfam:PF00652
Length = 317
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 298 IGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYQCDNP 441
+ HVAH S ++ SGV +N L N+ G A K+Y P
Sbjct: 130 VTHVAHHSSNQPQSSSGVYHKPDENRLPDNLAGLAGRATVKVYSKAEP 177
>At4g34990.1 68417.m04961 myb family transcription factor (MYB32)
similar to myb DNA-binding protein GI:19052 from
[Hordeum vulgare]
Length = 274
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +1
Query: 352 QTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDDS 495
+ +RF R + G+ N K C+N KC S S SS D S
Sbjct: 203 RNLRFGRVKYRCSACRFGFGNGKECSCNNVKCQTEDSSSSSYSSTDIS 250
>At2g41670.1 68415.m05148 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 386
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 199 NLHQQD--LSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRF 366
N H + + LD+ +L EVI+R+ T+ + +G GKS ++ +I + RF
Sbjct: 109 NAHSRSSVMKLLDLVELKL--KEVIAREPTLLVMVVGVPNVGKSALINSIHQIAAARF 164
>At1g64140.1 68414.m07266 expressed protein similar to putative
disease resistance protein GB:CAB40943 GI:4586107 from
[Arabidopsis thaliana]; weak similarity to Loricrin
(Swiss-Prot:P23490) [Homo sapiens]
Length = 646
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Frame = -2
Query: 621 CVHHGS---TVKHSCHKDVVTRAVY-KAH 547
C+ HG KH CHK R VY KAH
Sbjct: 275 CISHGGGRRCQKHGCHKGAEGRTVYCKAH 303
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 544 HVSFVDCPGHDILMATMLNGAAVMDAALLLI 636
+ + +D PGH + M+ G + D A+L+I
Sbjct: 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLII 116
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 27.5 bits (58), Expect = 8.0
Identities = 22/117 (18%), Positives = 46/117 (39%)
Frame = +1
Query: 286 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSF 465
N+ I HV HGKST+ ++ + + + + + + + + + + T
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAGI-----IAQEVAGDVRMTDTRADEAERGITIKSTGI 75
Query: 466 ISGGSSKDDSFPCLRPACTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLI 636
D+S A G L ++ +D PGH + + + D AL+++
Sbjct: 76 SLYYEMTDESLKSFTGARDGNEYL---INLIDSPGHVDFSSEVTAALRITDGALVVV 129
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 544 HVSFVDCPGHDILMATMLNGAAVMDAALLLI 636
+ + +D PGH + M+ G + D A+L+I
Sbjct: 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLII 116
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 544 HVSFVDCPGHDILMATMLNGAAVMDAALLLI 636
+ + +D PGH + M+ G + D A+L+I
Sbjct: 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLII 116
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 544 HVSFVDCPGHDILMATMLNGAAVMDAALLLI 636
+ + +D PGH + M+ G + D A+L+I
Sbjct: 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLII 116
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,011,542
Number of Sequences: 28952
Number of extensions: 259397
Number of successful extensions: 699
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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