BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11e09 (638 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4 SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2 SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11) 29 3.2 SB_38860| Best HMM Match : GRP (HMM E-Value=0.47) 29 4.2 SB_7588| Best HMM Match : DcpS (HMM E-Value=0) 28 7.4 SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36) 27 9.7 SB_20377| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7 SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39) 27 9.7 >SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 857 Score = 29.5 bits (63), Expect = 2.4 Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%) Frame = +2 Query: 470 KHIKLLSDIDNSIENGV-QAKSDGSHKYLS 556 +H+KL+S++ NS+ N + +AK G HK ++ Sbjct: 319 EHLKLMSELGNSLINSIYEAKIAGDHKKIN 348 >SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 469 Score = 29.1 bits (62), Expect = 3.2 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -1 Query: 65 TCNIRACLLTNAKNTDCHV 9 +C+ C +TN NTDCHV Sbjct: 304 SCHTTDCHVTNCHNTDCHV 322 Score = 28.3 bits (60), Expect = 5.6 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -1 Query: 65 TCNIRACLLTNAKNTDCHV 9 +C+ C TN NTDCHV Sbjct: 273 SCHTTDCHATNCHNTDCHV 291 >SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11) Length = 829 Score = 29.1 bits (62), Expect = 3.2 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%) Frame = +2 Query: 464 LNKHIKLLSDIDNSIENG--VQAKSDGSHK-YLSITQGPLPSY 583 L+KH +LLSD+ ++++G V D H+ Y T+GP Y Sbjct: 645 LDKHQELLSDLQQAVDDGKLVSFTVDSKHRLYNYNTKGPTGGY 687 >SB_38860| Best HMM Match : GRP (HMM E-Value=0.47) Length = 212 Score = 28.7 bits (61), Expect = 4.2 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -2 Query: 313 YRKYFT*ICKKITLPNNETNLSLMKYCSY 227 +RKY + K++ LP+ T + KYC Y Sbjct: 181 FRKYCEGLPKELRLPSESTATTFRKYCEY 209 >SB_7588| Best HMM Match : DcpS (HMM E-Value=0) Length = 446 Score = 27.9 bits (59), Expect = 7.4 Identities = 18/55 (32%), Positives = 25/55 (45%) Frame = +2 Query: 470 KHIKLLSDIDNSIENGVQAKSDGSHKYLSITQGPLPSYAHTPGTTIELTCEAAGS 634 +HI LL +I N + ++ K + H L I PSY H L +A GS Sbjct: 344 EHIPLLKNILNKGRDAIRTKYNVPHSQLRIYVHYQPSYYHFHVHFTHLKFDAPGS 398 >SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36) Length = 1290 Score = 27.5 bits (58), Expect = 9.7 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = +2 Query: 488 SDIDNSIENGVQAKSDGSHKYLSITQGPLPSYAHTPGTTIELTCEAAGSP 637 SD++N+ E GV KS + PL HTP + AA SP Sbjct: 1035 SDVNNNSEGGVSGKSPVKPDVTATRISPLLPPTHTPNSGPLEENPAASSP 1084 >SB_20377| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 159 Score = 27.5 bits (58), Expect = 9.7 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = +3 Query: 474 TLSCFRTSITVLRMVCKQNLMDLINIYRSRKAPYR--RTHILPEP 602 T SC +++ V + V +L DL +I ++ PYR H++ +P Sbjct: 41 TCSCRHSNLVVAQSVFVNSLSDLTSISQNSVKPYRLKLVHVVRDP 85 >SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39) Length = 1060 Score = 27.5 bits (58), Expect = 9.7 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = -2 Query: 307 KYFT*ICKKITLPNNETNLSLMKYCSYYSFCYKFKWRTATR 185 ++FT +K+ N++ + CSY YK+K+ T TR Sbjct: 528 RFFTKAIEKV---NSKETSHIASVCSYRYLSYKYKYNTFTR 565 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,305,133 Number of Sequences: 59808 Number of extensions: 391136 Number of successful extensions: 946 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 824 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 945 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1608851125 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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