Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e08
         (612 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            29   0.041
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    29   0.041
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    27   0.12 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   3.5  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   6.2  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   6.2  

>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 28.7 bits (61), Expect = 0.041
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -1

Query: 501 GCSVTSGTLRSR*SMAAATLASPTARGADTYGAAVVAARTTPA 373
           GC+ T G + S+ SMA    A P   G  T+GA++    T PA
Sbjct: 54  GCNET-GFINSQPSMAEFMTALPHLSGDMTHGASISPQNTPPA 95


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 0.041
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -1

Query: 501 GCSVTSGTLRSR*SMAAATLASPTARGADTYGAAVVAARTTPA 373
           GC+ T G + S+ SMA    A P   G  T+GA++    T PA
Sbjct: 54  GCNET-GFINSQPSMAEFMTALPHLSGDMTHGASISPQNTPPA 95


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 319 INCSDLPNSSFNGRDS 272
           +NC DLPNS  N R+S
Sbjct: 74  LNCRDLPNSRCNSRES 89


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 310 SNLFKSQRCPLTSRMGSIDR*SWS 381
           S L  SQ CP+TS  GS D  S S
Sbjct: 369 SALINSQSCPITS-SGSTDSSSQS 391


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 487 CHGTT*SHSGDYQTSCAIENIPSR 558
           C+G      G  + +C I+N P+R
Sbjct: 136 CNGEKDCSDGSDENTCDIDNDPNR 159


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +2

Query: 461 DHLERRVPLVTEQPKVIVETTKQAVLSKISPHVN 562
           DH+++  P     P     +T Q   + +SP +N
Sbjct: 289 DHIQQATPYSAPGPTYSTWSTVQTPTTVMSPTIN 322


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,754
Number of Sequences: 336
Number of extensions: 2408
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)