Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11e08
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45992| Best HMM Match : HCO3_cotransp (HMM E-Value=0) 30 1.7
SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_13336| Best HMM Match : Pox_A32 (HMM E-Value=0.049) 29 3.0
SB_24529| Best HMM Match : Lectin_C (HMM E-Value=3.4e-27) 28 5.2
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24) 28 5.2
SB_7361| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 28 5.2
SB_44950| Best HMM Match : rve (HMM E-Value=3.8e-12) 28 6.9
SB_32076| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 28 6.9
SB_29300| Best HMM Match : GFO_IDH_MocA (HMM E-Value=2.1e-17) 27 9.1
>SB_45992| Best HMM Match : HCO3_cotransp (HMM E-Value=0)
Length = 890
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +2
Query: 293 AVGQVGAIYSKVKGAHSLLEWALSTAEAGVVLAATTAAPYV----SAPLAVGDAKV 448
A+ G +Y K KG + E +STA +GV+ A P + + PL V + V
Sbjct: 440 AISFGGLLYKKTKGWMGVAEMIVSTALSGVIFALFAGQPLIIIGATGPLLVFETNV 495
>SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1450
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +2
Query: 464 HLERRVPLVTEQPKVIVETTKQAVLSK 544
HL+ R PL++ +P + + TT+Q+ ++K
Sbjct: 1304 HLDTRAPLISARPCIAMSTTQQSKITK 1330
>SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 293 AVGQVGAIYSKVKGAHSLLEWALSTAEAGVVLAATTAAPYVSAPLAV 433
A+ +V + + G S+ W+L G+ ++ TAAP +A L V
Sbjct: 84 AIDKVAGVIATGGGDSSIRLWSLQDLSNGLTISTETAAPSANASLPV 130
>SB_13336| Best HMM Match : Pox_A32 (HMM E-Value=0.049)
Length = 960
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +2
Query: 464 HLERRVPLVTEQPKVIVETTKQAVLSK 544
HL+RR P ++ +P + + TT+Q+ ++K
Sbjct: 871 HLDRRAPPISARPCIAMSTTQQSKITK 897
>SB_24529| Best HMM Match : Lectin_C (HMM E-Value=3.4e-27)
Length = 644
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 2 VCETVHFNIISFYFVSEQSPISEITH 79
VCET+HF +FY + S I+ + H
Sbjct: 20 VCETIHFTPYTFYPDKDVSVIATVNH 45
>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
Length = 1064
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -1
Query: 477 LRSR*SMAAATLASPTARGADTYGAAVVAARTTPASAVD 361
LR+ +M A+ LAS A+ +Y ++ ++ TPA+ +D
Sbjct: 569 LRTLINMLASDLASSIAQSGHSYAVSLASSSLTPAARLD 607
>SB_7361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 2 VCETVHFNIISFYFVSEQSPISEITH 79
VCET+HF +FY + S I+ + H
Sbjct: 34 VCETIHFTPYTFYPDKDVSVIATVNH 59
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 472 TQSATCHGTT*SHSGDYQTSCAIENIPS 555
TQS+T H +T H G+ QT+ +I +I S
Sbjct: 241 TQSSTSHSSTPRHHGEPQTTISITSIIS 268
>SB_44950| Best HMM Match : rve (HMM E-Value=3.8e-12)
Length = 489
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 464 HLERRVPLVTEQPKVIVETTKQAVLSK 544
HLE R P ++ +P + + TT+Q+ ++K
Sbjct: 77 HLETRAPPISARPCIAMSTTQQSKITK 103
>SB_32076| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 2352
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 464 HLERRVPLVTEQPKVIVETTKQAVLSK 544
HLE R P ++ +P + + TT+Q+ ++K
Sbjct: 1933 HLETRAPPISARPCIAMSTTQQSKITK 1959
>SB_29300| Best HMM Match : GFO_IDH_MocA (HMM E-Value=2.1e-17)
Length = 634
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 137 SFLLNSKVKILIVFFEDVNRVSEMATEVSSAPTTLPQLQSVQKAMAIPTVEAAV 298
+ L N ++++ V E V E + T+ + +VQ A+A P+V+AAV
Sbjct: 23 NILNNPRIELKYVIEEAVENAVEFLRQELCCYATVLAVSAVQVALADPSVKAAV 76
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,524,527
Number of Sequences: 59808
Number of extensions: 310156
Number of successful extensions: 992
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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