Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e08
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39520.1 68418.m04785 expressed protein predicted protein, Sy...    31   0.46 
At5g45150.1 68418.m05543 ribonuclease III family protein similar...    30   1.1  
At3g02890.1 68416.m00284 PHD finger protein-related contains low...    30   1.4  
At5g61740.1 68418.m07747 ABC transporter family protein ABC fami...    29   2.4  
At5g42280.1 68418.m05146 DC1 domain-containing protein contains ...    28   5.6  
At3g48490.1 68416.m05293 expressed protein                             27   9.8  
At1g07440.1 68414.m00794 tropinone reductase, putative / tropine...    27   9.8  

>At5g39520.1 68418.m04785 expressed protein predicted protein,
           Synechocystis sp., PIR:S77152
          Length = 230

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
 Frame = +2

Query: 212 TEVSSAPTTLPQLQSVQKAMAIPTVEAAVGQVGAIYSKVKGAHSLLEWALSTAEAGVVLA 391
           T+V     T  +LQ + + M  PT +  +G  GA+Y   +G H+ L+  L T     VL 
Sbjct: 126 TKVLELNMTKWELQGLDRVME-PT-DFTLGVKGALYPDRRGRHTRLKGRLETT-ISFVLP 182

Query: 392 ATTAAPYVSAPLAVGDAKVAAAIDHLERRV--PLVTEQPKVIVETTK 526
           +  A         + +A +A  +D+++ RV   LV +  K   E  K
Sbjct: 183 SVLALVPEDVRRNMANAILAGLVDNMKHRVIESLVADYSKFKYERKK 229


>At5g45150.1 68418.m05543 ribonuclease III family protein similar to
           CAF protein (RNA helicase/RNAseIII) [Arabidopsis
           thaliana] GI:6102610; contains Pfam profiles PF00035:
           Double-stranded RNA binding motif, PF00636 RNase3 domain
          Length = 957

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 404 APYVSAPLAVGDAKVAAAIDHLERRVPLVTEQPKVIVETTKQAVLSKISPHV 559
           +PYV      G    + +++     +P  +E P     TTKQ V+ K SPHV
Sbjct: 784 SPYVEPVDTKGKLFESCSVE--SSSLPTTSENPSTYEMTTKQMVVDKDSPHV 833


>At3g02890.1 68416.m00284 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 963

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +2

Query: 251 QSVQKAMAIPTVEAAVGQVGAIYSKVKGAHSLLEWALSTAEAGVVLAATTAAPYVSAPLA 430
           ++V K+M+   ++  VG      SKVKG+  L +W+     +  +    ++ PY  +P  
Sbjct: 405 KNVGKSMSSRCID--VGSSNCNDSKVKGSKQLKDWSTEANPSASISRGNSSIPYAKSPRD 462

Query: 431 VGD 439
           + D
Sbjct: 463 LKD 465


>At5g61740.1 68418.m07747 ABC transporter family protein ABC family
            transporter, Entamoeba histolytica, TREMBL:EH058
          Length = 848

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
 Frame = +2

Query: 182  EDVNRVSEMATEVSSAPTTLPQLQSVQKAMAIPTVEAAVGQVGAIYSKVKGAHSLLEWAL 361
            E   +V  M   +S     +  L   QK   IP  E  +  V  +  KVK   ++  W L
Sbjct: 767  EHEEKVERMVKHISPNSKRVYHLAGTQK-FEIPKQEVMIADVFFMVEKVKSKFTVFAWGL 825

Query: 362  --STAEAGVVLAATTAAPYVS 418
              +T E      ATTA  + S
Sbjct: 826  ADTTLEDVFFKVATTAQAFNS 846


>At5g42280.1 68418.m05146 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 694

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 334 TFDF*INCSDLPNSSFNGRDSHCLLHRLELWQCCGS*AYFCRHF 203
           TF   +NC+ LP+   +G   H L   L   +C G  + +C  +
Sbjct: 499 TFLVDVNCASLPDPFIHGCHPHDLFFNLTEGKCMGCSSDYCSSY 542


>At3g48490.1 68416.m05293 expressed protein
          Length = 120

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +2

Query: 323 KVKGAHSLLEWALSTAEAGVVLAATTAAPYVSAPLAVGDAKVAAAIDHLERRVPLVTEQP 502
           K+K   +  +   S  E    L++T+++  +S+   +GD   A AID  E    + ++ P
Sbjct: 37  KLKQGSTRQDTTSSETEGEENLSSTSSSHVLSSDTQLGDTHDAMAIDSCESSKQIKSKNP 96

Query: 503 KVI 511
            V+
Sbjct: 97  SVL 99


>At1g07440.1 68414.m00794 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 266

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
 Frame = +2

Query: 305 VGAIYSKVKGAHSLL------EWALSTAEAGVVLAATTAAPYVSA 421
           VG+IYS  KGA + L      EWA     A  V  A  A P   A
Sbjct: 160 VGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEA 204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,473,100
Number of Sequences: 28952
Number of extensions: 212865
Number of successful extensions: 544
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)