Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e06
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    33   0.050
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    29   0.62 
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    26   4.4  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.6  

>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 32.7 bits (71), Expect = 0.050
 Identities = 19/75 (25%), Positives = 37/75 (49%)
 Frame = +2

Query: 200 PFFRDPIKYIRQATSPIEDSHGIEGVYSDSEIKVDGKKVEVHLDVQNFTPEQIQVKTVGN 379
           P   + I   R A   + D    E V+S  E+K+     ++++ + NFTP Q+Q+  + N
Sbjct: 124 PVLHELIHNWRSANGKVIDILMHESVFSPEEVKLIMD--QLNIPINNFTPSQLQLLGITN 181

Query: 380 EIMIEGKKEIKREDG 424
             ++   +  K ++G
Sbjct: 182 STIVGESENGKDQNG 196


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +2

Query: 251 EDSHGIEGVYSDSEIKVDGKKVEVHLDVQNFTPEQIQVKTVGNEIMIEGKKEIKREDGWT 430
           E SHGI     + EI +DGK  E+ L ++ +   + Q++++          E+  +D W 
Sbjct: 157 EPSHGITFESWEKEISIDGKTEEISLLLEEYPDLRKQMESL-------VPSEVSYDDFWK 209

Query: 431 RSHFERRFLLP 463
           R  + +  + P
Sbjct: 210 RFFWHKEVVQP 220


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
 Frame = -3

Query: 472 ETFRKKEPS-LEVTPRPAVFSLYL-----FLALNHNF 380
           + F+K  P  LEV P PA FS  L     FL +NH++
Sbjct: 361 QVFKKVFPQFLEVCPHPATFSAMLSLGSVFLPVNHSW 397


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +3

Query: 144 TGIRLLEHLKILSPSSPGTLSSAIRSSTSGKPPHQLKTVMASKEYTQI 287
           TG     +  ++   SP T+S++  +  + + P   K V  SK+Y  +
Sbjct: 130 TGRATKSNAGVMDVQSPSTMSTSKNNVRNAERPASKKPVFGSKKYFDV 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,514
Number of Sequences: 5004
Number of extensions: 52493
Number of successful extensions: 206
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)