Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11e05
(581 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A7SA25 Cluster: Predicted protein; n=2; Nematostella ve... 220 2e-56
UniRef50_P35250 Cluster: Replication factor C subunit 2; n=103; ... 219 4e-56
UniRef50_Q4TFR9 Cluster: Chromosome undetermined SCAF4252, whole... 195 5e-49
UniRef50_A0EG83 Cluster: Chromosome undetermined scaffold_95, wh... 176 4e-43
UniRef50_Q176Y6 Cluster: Replication factor C, 37kD-subunit, put... 175 8e-43
UniRef50_Q8WSL8 Cluster: Replication factor C subunit 4; n=6; Pl... 157 2e-37
UniRef50_A4I6D8 Cluster: Replication factor C, subunit 4, putati... 150 3e-35
UniRef50_UPI0000499C0F Cluster: Activator 1 40 kDa subunit; n=1;... 143 3e-33
UniRef50_Q7QWA3 Cluster: GLP_177_25642_24674; n=1; Giardia lambl... 143 3e-33
UniRef50_Q5K796 Cluster: DNA replication factor, putative; n=5; ... 140 2e-32
UniRef50_P38629 Cluster: Replication factor C subunit 3; n=15; D... 140 2e-32
UniRef50_P40937 Cluster: Replication factor C subunit 5; n=51; E... 136 5e-31
UniRef50_A2E6V9 Cluster: ATPase, AAA family protein; n=2; Tricho... 134 2e-30
UniRef50_Q9UXF5 Cluster: Replication factor C small subunit; n=1... 132 4e-30
UniRef50_Q245Y3 Cluster: ATPase, AAA family protein; n=2; Oligoh... 131 1e-29
UniRef50_Q2NH89 Cluster: Replication factor C small subunit; n=2... 130 3e-29
UniRef50_Q7T2C9 Cluster: Rfc4 protein; n=34; Fungi/Metazoa group... 126 3e-28
UniRef50_Q2UJ68 Cluster: Replication factor C; n=15; Pezizomycot... 126 3e-28
UniRef50_UPI0000DB75B4 Cluster: PREDICTED: similar to CG8142-PA;... 126 4e-28
UniRef50_A0CAF3 Cluster: Chromosome undetermined scaffold_161, w... 125 7e-28
UniRef50_A5E7K0 Cluster: Activator 1 41 kDa subunit; n=1; Lodder... 124 2e-27
UniRef50_UPI000049A58F Cluster: activator 1 36 kda subunit; n=1;... 123 3e-27
UniRef50_Q8QNA5 Cluster: EsV-1-182; n=1; Ectocarpus siliculosus ... 123 3e-27
UniRef50_Q9GR09 Cluster: Replication factor C3; n=9; Aconoidasid... 122 8e-27
UniRef50_P35249 Cluster: Replication factor C subunit 4; n=34; E... 121 1e-26
UniRef50_A7ATE5 Cluster: Replication factor C3 protein, putative... 120 2e-26
UniRef50_Q01F45 Cluster: Rfc5 replication factor C subunit 5 (36... 120 3e-26
UniRef50_UPI0000498FA9 Cluster: activator 1 subunit; n=1; Entamo... 119 4e-26
UniRef50_P34429 Cluster: Putative replication factor C subunit 5... 119 6e-26
UniRef50_Q8PVY4 Cluster: Replication factor C small subunit; n=1... 118 8e-26
UniRef50_Q5UZE5 Cluster: Replication factor C small subunit; n=5... 118 1e-25
UniRef50_A2DS36 Cluster: ATPase, AAA family protein; n=1; Tricho... 117 2e-25
UniRef50_Q5UP47 Cluster: Putative replication factor C small sub... 117 2e-25
UniRef50_P40348 Cluster: Replication factor C subunit 2; n=7; Sa... 117 2e-25
UniRef50_Q9XI09 Cluster: F8K7.11 protein; n=11; Eukaryota|Rep: F... 116 3e-25
UniRef50_Q86EA0 Cluster: Clone ZZD636 mRNA sequence; n=2; Bilate... 116 5e-25
UniRef50_Q5CVS5 Cluster: Replication factor C like AAA ATpase; n... 115 9e-25
UniRef50_Q8SQM0 Cluster: REPLICATION FACTOR C (ACTIVATOR 1) 37kD... 115 9e-25
UniRef50_Q9GR07 Cluster: Replication factor C subunit 2; n=6; Pl... 114 2e-24
UniRef50_UPI0000E4A8C8 Cluster: PREDICTED: similar to replicatio... 113 3e-24
UniRef50_Q0UV64 Cluster: Putative uncharacterized protein; n=1; ... 112 5e-24
UniRef50_A4IBL6 Cluster: Replication factor C, subunit 3, putati... 112 7e-24
UniRef50_Q977Z9 Cluster: Replication factor C small subunit; n=4... 111 1e-23
UniRef50_A0RYC0 Cluster: Replication factor C small subunit; n=1... 111 2e-23
UniRef50_Q4Q732 Cluster: Replication factor C, subunit 2, putati... 110 3e-23
UniRef50_Q4WW89 Cluster: Replication factor C subunit; n=1; Aspe... 108 8e-23
UniRef50_A7DR59 Cluster: Replication factor C; n=1; Candidatus N... 107 2e-22
UniRef50_Q5UQ72 Cluster: Putative replication factor C small sub... 107 2e-22
UniRef50_Q5CUE4 Cluster: Replication factor RFC3 AAA+ ATpase; n=... 93 4e-22
UniRef50_Q4UIH2 Cluster: Replication factor C subunit (RPC2 homo... 106 4e-22
UniRef50_Q8QKY2 Cluster: EsV-1-87; n=1; Ectocarpus siliculosus v... 103 3e-21
UniRef50_Q7R657 Cluster: GLP_574_161256_160291; n=1; Giardia lam... 102 7e-21
UniRef50_Q5UQ47 Cluster: Putative replication factor C small sub... 100 5e-20
UniRef50_P53016 Cluster: Replication factor C subunit 4; n=2; Ca... 98 2e-19
UniRef50_A6R5J4 Cluster: Activator 1 subunit 3; n=1; Ajellomyces... 96 5e-19
UniRef50_Q8TZC4 Cluster: Replication factor C small subunit (RFC... 95 8e-19
UniRef50_Q8SSI2 Cluster: DNA REPLICATION FACTOR C (ACTIVATOR 1) ... 95 1e-18
UniRef50_A6R3U6 Cluster: Activator 1 37 kDa subunit; n=1; Ajello... 93 6e-18
UniRef50_Q8QN66 Cluster: EsV-1-224; n=1; Ectocarpus siliculosus ... 92 8e-18
UniRef50_Q7QUZ0 Cluster: GLP_61_35037_36092; n=1; Giardia lambli... 88 2e-16
UniRef50_UPI0001554DFB Cluster: PREDICTED: similar to olfactory ... 83 6e-15
UniRef50_Q5GQL5 Cluster: Sliding clamp loader gp44; n=5; root|Re... 83 6e-15
UniRef50_Q9V2G3 Cluster: Replication factor C large subunit; n=4... 82 1e-14
UniRef50_Q8SSG6 Cluster: DNA REPLICATION FACTOR (ACTIVATOR 1) 36... 81 1e-14
UniRef50_A3ABV4 Cluster: Putative uncharacterized protein; n=1; ... 77 3e-13
UniRef50_Q8SRT8 Cluster: DNA REPLICATION FACTOR C SUBUNIT; n=1; ... 75 1e-12
UniRef50_O57852 Cluster: Replication factor C small subunit (RFC... 75 2e-12
UniRef50_Q9V2G4 Cluster: Replication factor C small subunit (RFC... 74 2e-12
UniRef50_Q6WI74 Cluster: Gp44; n=1; Vibrio phage KVP40|Rep: Gp44... 73 7e-12
UniRef50_A0B6D7 Cluster: Replication factor C large subunit; n=1... 69 6e-11
UniRef50_Q2NH88 Cluster: Replication factor C large subunit; n=1... 69 8e-11
UniRef50_A3CUW4 Cluster: Replication factor C; n=2; Methanomicro... 69 1e-10
UniRef50_A5UMF4 Cluster: Replication factor C large subunit; n=2... 69 1e-10
UniRef50_Q64AI6 Cluster: Replication factor C subunit; n=1; uncu... 68 1e-10
UniRef50_Q0W3P4 Cluster: Replication factor C large subunit; n=1... 66 6e-10
UniRef50_Q2FQR4 Cluster: Replication factor C large subunit; n=2... 66 6e-10
UniRef50_Q58817 Cluster: Replication factor C small subunit (RFC... 66 8e-10
UniRef50_Q2FUA8 Cluster: Replication factor C subunit; n=1; Meth... 65 1e-09
UniRef50_Q8Q084 Cluster: Replication factor C large subunit; n=4... 64 2e-09
UniRef50_Q58294 Cluster: Replication factor C large subunit; n=6... 64 2e-09
UniRef50_Q98RV1 Cluster: Replication factor C 37 KD subunit; n=1... 64 2e-09
UniRef50_A2SQR6 Cluster: Replication factor C large subunit; n=1... 64 2e-09
UniRef50_O29072 Cluster: Replication factor C large subunit; n=1... 64 2e-09
UniRef50_UPI000049936A Cluster: Activator 1 140 kDa subunit; n=1... 63 4e-09
UniRef50_Q5V1F7 Cluster: Replication factor C large subunit; n=5... 63 5e-09
UniRef50_Q8TUC8 Cluster: Replication factor C subunit; n=4; Meth... 62 1e-08
UniRef50_A0M2F5 Cluster: DNA polymerase III subunit gamma/tau; n... 61 2e-08
UniRef50_A4CK17 Cluster: DNA polymerase III subunit gamma/tau; n... 61 2e-08
UniRef50_A3CTR4 Cluster: Replication factor C large subunit; n=1... 61 2e-08
UniRef50_Q975D4 Cluster: Replication factor C large subunit; n=5... 60 3e-08
UniRef50_A7AMJ0 Cluster: Putative uncharacterized protein; n=1; ... 60 5e-08
UniRef50_UPI00015BB275 Cluster: replication factor C large subun... 59 7e-08
UniRef50_Q2RMH2 Cluster: DNA polymerase III, subunits gamma and ... 58 1e-07
UniRef50_A2E9V5 Cluster: Differentiation specific element bindin... 58 1e-07
UniRef50_A2SRY4 Cluster: DNA polymerase III gamma/tau subunits-l... 58 1e-07
UniRef50_A3H683 Cluster: AAA ATPase, central region; n=1; Caldiv... 58 2e-07
UniRef50_Q8ZYK3 Cluster: Replication factor C large subunit; n=4... 58 2e-07
UniRef50_A0Q156 Cluster: ATPase, AAA family; n=1; Clostridium no... 57 3e-07
UniRef50_Q6CD04 Cluster: Similar to ca|CA5054|IPF3704 Candida al... 56 5e-07
UniRef50_Q1Q394 Cluster: Similar to DNA polymerase III subunit g... 56 6e-07
UniRef50_P60373 Cluster: Replication factor C large subunit; n=1... 56 6e-07
UniRef50_Q89BN2 Cluster: DNA polymerase III tau subunit; n=22; A... 56 8e-07
UniRef50_A1RWU6 Cluster: Replication factor C large subunit; n=1... 56 8e-07
UniRef50_Q03ZG9 Cluster: DNA polymerase III, gamma/tau subunit; ... 55 1e-06
UniRef50_A0NIM4 Cluster: DNA-dependent DNA polymerase III, gamma... 55 1e-06
UniRef50_Q8TZC5 Cluster: Replication factor C large subunit; n=1... 55 1e-06
UniRef50_Q9YBS5 Cluster: Replication factor C large subunit; n=1... 55 1e-06
UniRef50_Q4P896 Cluster: Putative uncharacterized protein; n=1; ... 54 2e-06
UniRef50_P40938 Cluster: Replication factor C subunit 3; n=64; E... 54 2e-06
UniRef50_Q3A8S0 Cluster: Putative DNA polymerase III, gamma/tau ... 54 3e-06
UniRef50_Q1QXX6 Cluster: AAA ATPase, central region; n=1; Chromo... 54 3e-06
UniRef50_Q8SR43 Cluster: DNA REPLICATION FACTOR C 38kDa SUBUNIT;... 54 3e-06
UniRef50_Q1DWQ3 Cluster: Putative uncharacterized protein; n=1; ... 54 3e-06
UniRef50_P42425 Cluster: ATP-dependent protease La homolog; n=46... 54 3e-06
UniRef50_Q9WZF2 Cluster: DNA polymerase III, gamma and tau subun... 53 6e-06
UniRef50_A2BL93 Cluster: Replication factor C large subunit; n=2... 53 6e-06
UniRef50_Q1EZ15 Cluster: DNA polymerase III, subunits gamma and ... 52 8e-06
UniRef50_A6QBX8 Cluster: DNA polymerase III, gamma/tau subunits;... 52 8e-06
UniRef50_A3IWH2 Cluster: DNA polymerase III gamma and tau subuni... 52 8e-06
UniRef50_Q17P00 Cluster: Werner helicase interacting protein; n=... 52 8e-06
UniRef50_A0EHK8 Cluster: Chromosome undetermined scaffold_97, wh... 42 8e-06
UniRef50_Q6NC57 Cluster: Possible DNA polymerase III tau subunit... 52 1e-05
UniRef50_O67707 Cluster: DNA polymerase III gamma subunit; n=3; ... 52 1e-05
UniRef50_A7HJR0 Cluster: DNA polymerase III, subunits gamma and ... 52 1e-05
UniRef50_Q5AF80 Cluster: Putative uncharacterized protein RAD24;... 52 1e-05
UniRef50_Q9ABG0 Cluster: DNA polymerase III, gamma and tau subun... 52 1e-05
UniRef50_A7HGU5 Cluster: DNA polymerase III, subunits gamma and ... 52 1e-05
UniRef50_Q56C06 Cluster: Gp44 clamp-loader subunit; n=1; Enterob... 52 1e-05
UniRef50_Q1ATA7 Cluster: DNA polymerase III, subunits gamma and ... 51 2e-05
UniRef50_Q4PAP0 Cluster: Putative uncharacterized protein; n=1; ... 51 2e-05
UniRef50_A2QMM8 Cluster: Contig An07c0070, complete genome; n=2;... 51 2e-05
UniRef50_A3VPV6 Cluster: DNA polymerase III subunits gamma and t... 51 2e-05
UniRef50_A6R2J2 Cluster: Predicted protein; n=1; Ajellomyces cap... 51 2e-05
UniRef50_UPI0000E49FBB Cluster: PREDICTED: similar to MGC81266 p... 50 3e-05
UniRef50_Q6MPI4 Cluster: ATPase, AAA family; n=1; Bdellovibrio b... 50 3e-05
UniRef50_Q4A6Z5 Cluster: DNA polymerase III gamma and tau subuni... 50 3e-05
UniRef50_Q2JLX3 Cluster: DNA polymerase III, subunits gamma and ... 50 3e-05
UniRef50_A1VDA3 Cluster: AAA ATPase, central domain protein; n=4... 50 3e-05
UniRef50_Q4MZF5 Cluster: Replication factor C large subunit, put... 50 3e-05
UniRef50_Q2TVY2 Cluster: Checkpoint RAD17-RFC complex; n=2; Aspe... 50 3e-05
UniRef50_Q4FNB0 Cluster: DNA-directed DNA polymerase gamma/tau s... 50 4e-05
UniRef50_A3ISF6 Cluster: DNA-directed DNA polymerase; n=3; Cyano... 50 4e-05
UniRef50_Q74L01 Cluster: DNA polymerase III subunit gamma/tau; n... 50 5e-05
UniRef50_Q4L3D4 Cluster: DNA polymerase III gamma and tau subuni... 50 5e-05
UniRef50_O48696 Cluster: F3I6.23 protein; n=3; Arabidopsis thali... 50 5e-05
UniRef50_Q0C7D8 Cluster: Predicted protein; n=1; Aspergillus ter... 50 5e-05
UniRef50_Q7V9L4 Cluster: DNA polymerase III gamma/tau subunit; n... 49 7e-05
UniRef50_Q6MH32 Cluster: DNA polymerase III gamma and tau subuni... 49 7e-05
UniRef50_Q0IE22 Cluster: DNA polymerase III, subunits gamma and ... 49 7e-05
UniRef50_Q7RNS4 Cluster: Drosophila melanogaster BcDNA.LD06837, ... 49 7e-05
UniRef50_Q7NK69 Cluster: DNA polymerase III gamma and tau subuni... 49 9e-05
UniRef50_Q6G4V0 Cluster: DNA polymerase III subunit tau; n=6; Rh... 49 9e-05
UniRef50_Q7P6U1 Cluster: DNA polymerase III subunit gamma/tau; n... 49 9e-05
UniRef50_A5D6B1 Cluster: DNA polymerase III, gamma/tau subunits;... 49 9e-05
UniRef50_A2A0B1 Cluster: DNA polymerase III subunit gamma/tau; n... 49 9e-05
UniRef50_Q54MH9 Cluster: Replication factor C subunit; n=1; Dict... 49 9e-05
UniRef50_A7D2R8 Cluster: AAA ATPase, central domain protein; n=1... 49 9e-05
UniRef50_Q9WYX8 Cluster: UPF0189 protein TM_0508; n=4; Thermotog... 49 9e-05
UniRef50_Q6L0P4 Cluster: Replication factor C large subunit; n=1... 49 9e-05
UniRef50_Q1IQ74 Cluster: DNA polymerase III, subunits gamma and ... 48 1e-04
UniRef50_Q9C587 Cluster: Replication factor C large subunit-like... 48 1e-04
UniRef50_Q6J2Q0 Cluster: Gp44; n=1; Acinetobacter phage 133|Rep:... 48 1e-04
UniRef50_A2G4Z2 Cluster: Differentiation specific element bindin... 48 1e-04
UniRef50_UPI00006CAE51 Cluster: ATPase, AAA family protein; n=1;... 48 2e-04
UniRef50_Q8EY86 Cluster: DNA polymerase III subunit gamma; n=4; ... 48 2e-04
UniRef50_Q67LR0 Cluster: ATP/GTP-binding domain protein; n=21; B... 48 2e-04
UniRef50_Q5FTB4 Cluster: DNA polymerase III subunit gamma/tau; n... 48 2e-04
UniRef50_A4M5U6 Cluster: DNA polymerase III, subunits gamma and ... 48 2e-04
UniRef50_A5E3H7 Cluster: Putative uncharacterized protein; n=1; ... 48 2e-04
UniRef50_UPI0000D55FC7 Cluster: PREDICTED: similar to Activator ... 41 2e-04
UniRef50_Q0C591 Cluster: DNA polymerase III, subunits gamma and ... 48 2e-04
UniRef50_Q9GQW6 Cluster: Replication factor C subunit 1; n=6; Pl... 48 2e-04
UniRef50_UPI0000499B2D Cluster: AAA family ATPase; n=1; Entamoeb... 47 3e-04
UniRef50_Q97FT8 Cluster: Lon-like ATP-dependent protease; n=1; C... 47 3e-04
UniRef50_Q2GDS0 Cluster: Putative DNA polymerase III, gamma/tau ... 47 3e-04
UniRef50_O25419 Cluster: DNA polymerase III gamma and tau subuni... 47 3e-04
UniRef50_Q0B0W5 Cluster: DNA-directed DNA polymerase; n=1; Syntr... 47 3e-04
UniRef50_Q59Y48 Cluster: Putative uncharacterized protein; n=1; ... 47 3e-04
UniRef50_O94697 Cluster: Replication factor C subunit 5; n=2; As... 47 3e-04
UniRef50_Q67TJ5 Cluster: DNA polymerase III gamma and tau subuni... 47 4e-04
UniRef50_Q18U88 Cluster: DNA polymerase III, subunits gamma and ... 47 4e-04
UniRef50_Q117S8 Cluster: DNA polymerase III, subunits gamma and ... 47 4e-04
UniRef50_A7CST5 Cluster: DNA polymerase III, subunits gamma and ... 47 4e-04
UniRef50_A5KSU9 Cluster: DNA polymerase III, subunits gamma and ... 47 4e-04
UniRef50_A4XJ39 Cluster: DNA polymerase III, subunits gamma and ... 47 4e-04
UniRef50_A3EPW1 Cluster: Putative DNA polymerase III, gamma/tau ... 47 4e-04
UniRef50_Q10NN1 Cluster: ATPase, AAA family protein, expressed; ... 47 4e-04
UniRef50_P40151 Cluster: DNA-dependent ATPase MGS1; n=6; Sacchar... 47 4e-04
UniRef50_Q8YMK1 Cluster: DNA polymerase III gamma and tau subuni... 46 5e-04
UniRef50_Q4AHZ6 Cluster: DNA-directed DNA polymerase; n=1; Chlor... 46 5e-04
UniRef50_Q0ASK9 Cluster: DNA polymerase III, subunits gamma and ... 46 5e-04
UniRef50_A6LMU3 Cluster: DNA polymerase III, subunits gamma and ... 46 5e-04
UniRef50_Q96S08 Cluster: Protein CTF18 homolog; n=22; cellular o... 46 5e-04
UniRef50_UPI0000E4A039 Cluster: PREDICTED: hypothetical protein;... 46 7e-04
UniRef50_Q8EUW0 Cluster: DNA polymerase III gamma-tau subunits; ... 46 7e-04
UniRef50_Q6F0D9 Cluster: DNA polymerase III gamma and tau subuni... 46 7e-04
UniRef50_Q6ABA1 Cluster: DNA polymerase III subunit gamma; n=2; ... 46 7e-04
UniRef50_A5P451 Cluster: DNA-directed DNA polymerase; n=1; Methy... 46 7e-04
UniRef50_A4E9Y5 Cluster: Putative uncharacterized protein; n=1; ... 46 7e-04
UniRef50_A1ISN1 Cluster: DNA polymerase III tau and gamma chains... 46 7e-04
UniRef50_Q01F52 Cluster: Replication factor C 110 kDa subunit; n... 46 7e-04
UniRef50_A2X8Q4 Cluster: Putative uncharacterized protein; n=2; ... 46 7e-04
UniRef50_A0RY55 Cluster: Replication factor C/ATPase involved in... 46 7e-04
UniRef50_Q3F084 Cluster: DNA polymerase III subunit gamma/tau; n... 35 8e-04
UniRef50_Q8ZSE1 Cluster: DNA polymerase III gamma and tau subuni... 46 9e-04
UniRef50_Q6KIL7 Cluster: DNA polymerase III subunit gamma and ta... 46 9e-04
UniRef50_Q84FP3 Cluster: DNA polymerase III gamma and tau subuni... 46 9e-04
UniRef50_Q3CFZ5 Cluster: AAA ATPase, central region; n=3; Bacter... 46 9e-04
UniRef50_Q022F8 Cluster: DNA polymerase III, subunits gamma and ... 46 9e-04
UniRef50_A6QCT9 Cluster: ATPase, AAA family; n=22; Epsilonproteo... 46 9e-04
UniRef50_A3TI73 Cluster: DNA polymerase III subunits gamma and t... 46 9e-04
UniRef50_A1A0Y3 Cluster: Putative uncharacterized protein; n=2; ... 46 9e-04
UniRef50_Q96S55 Cluster: ATPase WRNIP1; n=31; Eumetazoa|Rep: ATP... 46 9e-04
UniRef50_UPI000050FCE9 Cluster: COG2812: DNA polymerase III, gam... 45 0.001
UniRef50_UPI0000F31775 Cluster: Cell cycle checkpoint protein RA... 45 0.001
UniRef50_Q8R5R3 Cluster: Uncharacterized ATPase related to the h... 45 0.001
UniRef50_Q74BH4 Cluster: ATPase, AAA family; n=2; Deltaproteobac... 45 0.001
UniRef50_Q4HGU7 Cluster: DNA polymerase III gamma and tau subuni... 45 0.001
UniRef50_Q1MPV7 Cluster: DNA polymerase III, gamma/tau subunits;... 45 0.001
UniRef50_A3V6X7 Cluster: Putative uncharacterized protein; n=1; ... 45 0.001
UniRef50_Q6FYP6 Cluster: Holliday junction ATP-dependent DNA hel... 45 0.001
UniRef50_Q5UQE8 Cluster: Putative replication factor C small sub... 45 0.001
UniRef50_UPI00015B60A5 Cluster: PREDICTED: hypothetical protein;... 36 0.001
UniRef50_Q97CY0 Cluster: Lon-like ATP-dependent protease; n=8; C... 45 0.002
UniRef50_A5FRM9 Cluster: DNA polymerase III, subunits gamma and ... 45 0.002
UniRef50_A3ZPF5 Cluster: DNA polymerase III gamma and tau subuni... 45 0.002
UniRef50_A1V9U7 Cluster: DNA polymerase III, subunits gamma and ... 45 0.002
UniRef50_Q5KCB2 Cluster: Sister chromatid cohesion-related prote... 45 0.002
UniRef50_A7TRM5 Cluster: Putative uncharacterized protein; n=1; ... 33 0.002
UniRef50_UPI00015B6046 Cluster: PREDICTED: similar to werner hel... 44 0.002
UniRef50_UPI00015B50FB Cluster: PREDICTED: similar to conserved ... 44 0.002
UniRef50_Q8A7B5 Cluster: DNA polymerase III subunit gamma/tau; n... 44 0.002
UniRef50_A7M2L2 Cluster: Putative uncharacterized protein; n=2; ... 44 0.002
UniRef50_A5V2B2 Cluster: DNA polymerase III, subunits gamma and ... 44 0.002
UniRef50_Q8DT16 Cluster: DNA polymerase III, gamma/tau subunit; ... 44 0.003
UniRef50_Q5P9F0 Cluster: DNA polymerase III gamma subunit; n=2; ... 44 0.003
UniRef50_A6NYA1 Cluster: Putative uncharacterized protein; n=1; ... 44 0.003
UniRef50_A2E870 Cluster: Putative uncharacterized protein; n=1; ... 44 0.003
UniRef50_Q6BUL9 Cluster: Similarities with CA0979|IPF19713 Candi... 44 0.003
UniRef50_UPI0000E87FCE Cluster: DNA-directed DNA polymerase; n=1... 44 0.003
UniRef50_Q6NU40 Cluster: MGC81266 protein; n=3; Eumetazoa|Rep: M... 44 0.003
UniRef50_Q4T303 Cluster: Chromosome 18 SCAF10147, whole genome s... 44 0.003
UniRef50_Q7NXL6 Cluster: DNA polymerase subunits gamma and tau; ... 44 0.003
UniRef50_Q2J818 Cluster: AAA ATPase, central region; n=5; Actino... 44 0.003
UniRef50_Q1GV06 Cluster: DNA polymerase III, subunits gamma and ... 44 0.003
UniRef50_A6NU34 Cluster: Putative uncharacterized protein; n=1; ... 44 0.003
UniRef50_A5UTH5 Cluster: DNA polymerase III, subunits gamma and ... 44 0.003
UniRef50_A0UY99 Cluster: DNA polymerase III, subunits gamma and ... 44 0.003
UniRef50_Q927D7 Cluster: DnaX protein; n=17; Bacillales|Rep: Dna... 43 0.005
UniRef50_Q2LYB8 Cluster: DNA polymerase III subunit gamma/tau; n... 43 0.005
UniRef50_O31001 Cluster: DNA polymerase III holoenzyme tau subun... 43 0.005
UniRef50_A7BAA1 Cluster: Putative uncharacterized protein; n=1; ... 43 0.005
UniRef50_A5WC21 Cluster: AAA ATPase, central domain protein; n=3... 43 0.005
UniRef50_A1GG63 Cluster: DNA polymerase III, subunits gamma and ... 43 0.005
UniRef50_A0LM15 Cluster: DNA polymerase III, subunits gamma and ... 43 0.005
UniRef50_Q6RHU1 Cluster: Gp44 clamp loader subunit; n=2; T4-like... 43 0.005
UniRef50_Q4Q084 Cluster: Replication factor C, subunit 5, putati... 43 0.005
UniRef50_Q0U4C8 Cluster: Putative uncharacterized protein; n=1; ... 43 0.005
UniRef50_P38251 Cluster: Replication factor C subunit 5; n=12; S... 43 0.005
UniRef50_O75943 Cluster: Cell cycle checkpoint protein RAD17; n=... 43 0.005
UniRef50_Q8DJU0 Cluster: DNA polymerase III gamma and tau subuni... 43 0.006
UniRef50_Q601S8 Cluster: DNA polymerase III gamma-tau subunits; ... 43 0.006
UniRef50_Q3SLE5 Cluster: DNA polymerase subunits gamma and tau; ... 43 0.006
UniRef50_A6W567 Cluster: DNA polymerase III, subunits gamma and ... 43 0.006
UniRef50_A5V6U8 Cluster: AAA ATPase, central domain protein; n=1... 43 0.006
UniRef50_P75177 Cluster: DNA polymerase III subunit gamma/tau; n... 43 0.006
UniRef50_Q7WMF3 Cluster: DNA polymerase III subunit Tau; n=4; Bo... 42 0.008
UniRef50_Q6NJY2 Cluster: DNA polymerase III subunit gamma/tau; n... 42 0.008
UniRef50_A6EHG2 Cluster: DNA polymerase III, tau and gamma subun... 42 0.008
UniRef50_A1WB62 Cluster: AAA ATPase, central domain protein; n=2... 42 0.008
UniRef50_Q7SA49 Cluster: Putative uncharacterized protein NCU073... 42 0.008
UniRef50_Q0UVB4 Cluster: Putative uncharacterized protein; n=1; ... 42 0.008
UniRef50_UPI0000DB6BAC Cluster: PREDICTED: similar to cutlet CG3... 42 0.011
UniRef50_Q5UQK9 Cluster: Putative uncharacterized protein; n=1; ... 42 0.011
UniRef50_Q9ZCA1 Cluster: DNA POLYMERASE III SUBUNITS GAMMA AND T... 42 0.011
UniRef50_P73507 Cluster: DNA polymerase III subunit; n=1; Synech... 42 0.011
UniRef50_Q1GKB7 Cluster: DNA polymerase III subunits gamma and t... 42 0.011
UniRef50_A4M640 Cluster: AAA ATPase, central domain protein; n=1... 42 0.011
UniRef50_A1HPS4 Cluster: DNA polymerase III, delta prime subunit... 42 0.011
UniRef50_A0JSD4 Cluster: DNA polymerase III, subunits gamma and ... 42 0.011
UniRef50_Q9M9R7 Cluster: F14L17.24 protein; n=2; Arabidopsis tha... 42 0.011
UniRef50_P0AAZ6 Cluster: Uncharacterized protein ycaJ; n=63; Gam... 42 0.011
UniRef50_P63976 Cluster: DNA polymerase III subunit gamma/tau; n... 42 0.011
UniRef50_Q4QEE0 Cluster: Putative uncharacterized protein; n=3; ... 32 0.012
UniRef50_UPI0000DAE674 Cluster: hypothetical protein Rgryl_01000... 42 0.014
UniRef50_Q5ZHX0 Cluster: Putative uncharacterized protein; n=5; ... 42 0.014
UniRef50_Q8YJU8 Cluster: Alr9015 protein; n=2; Nostoc sp. PCC 71... 42 0.014
UniRef50_Q3KEV6 Cluster: Transcriptional Regulator, Winged helix... 42 0.014
UniRef50_Q1K472 Cluster: DNA polymerase III, subunits gamma and ... 42 0.014
UniRef50_A6CF37 Cluster: Holliday junction DNA helicase B; n=1; ... 42 0.014
UniRef50_A1SDH6 Cluster: DNA polymerase III, subunits gamma and ... 42 0.014
UniRef50_A0L8F3 Cluster: DNA polymerase III, subunits gamma and ... 42 0.014
UniRef50_A7R600 Cluster: Chromosome undetermined scaffold_1105, ... 42 0.014
UniRef50_Q2U8Q6 Cluster: ATPase related to the helicase subunit ... 42 0.014
UniRef50_A5DW03 Cluster: Putative uncharacterized protein; n=1; ... 42 0.014
UniRef50_Q50739 Cluster: Uncharacterized AAA domain-containing p... 42 0.014
UniRef50_Q8KC00 Cluster: Holliday junction ATP-dependent DNA hel... 42 0.014
UniRef50_UPI00015B415D Cluster: PREDICTED: similar to werner hel... 41 0.019
UniRef50_Q74GZ9 Cluster: DNA polymerase III, gamma and tau subun... 41 0.019
UniRef50_A6PRD7 Cluster: AAA ATPase, central domain protein; n=4... 41 0.019
UniRef50_A5IZC8 Cluster: DNA polymerase III subunit gamma and TA... 41 0.019
UniRef50_A3JQW8 Cluster: DNA polymerase III subunits gamma and t... 41 0.019
UniRef50_A2BZ44 Cluster: DNA polymerase, gamma and tau subunits;... 41 0.019
UniRef50_A0Q7R7 Cluster: AAA family-ATPase; n=11; Francisella tu... 41 0.019
UniRef50_A4RWV3 Cluster: Predicted protein; n=8; Viridiplantae|R... 41 0.019
UniRef50_Q4UBG2 Cluster: Replication factor c-related protein, p... 41 0.019
UniRef50_Q6C7Z4 Cluster: Similar to sp|P49956 Saccharomyces cere... 41 0.019
UniRef50_A5DUH6 Cluster: Activator 1 95 kDa subunit; n=1; Lodder... 41 0.019
UniRef50_A3LTW2 Cluster: Replication factor ATPase; n=1; Pichia ... 41 0.019
UniRef50_Q9MBA3 Cluster: Cell cycle checkpoint protein RAD17; n=... 41 0.019
UniRef50_Q22DN2 Cluster: BRCA1 C Terminus (BRCT) domain; n=1; Te... 36 0.020
UniRef50_UPI0000D56DA8 Cluster: PREDICTED: similar to CG16838-PD... 31 0.020
UniRef50_Q6XM61 Cluster: FirrV-1-A26; n=1; Feldmannia irregulari... 41 0.025
UniRef50_Q98RG0 Cluster: DNA POLYMERASE III SUBUNIT GAMMA AND TA... 41 0.025
UniRef50_Q6AGY6 Cluster: DNA polymerase III, gamma and tau subun... 41 0.025
UniRef50_Q6S4W7 Cluster: Membrane-associated ATP-dependent Clp p... 41 0.025
UniRef50_Q26BL4 Cluster: ATPase related to the helicase subunit ... 41 0.025
UniRef50_Q0S8Z6 Cluster: DNA polymerase III subunit; n=12; Coryn... 41 0.025
UniRef50_A6GJ36 Cluster: DNA polymerase III, gamma and tau subun... 41 0.025
UniRef50_A6DLE8 Cluster: DNA polymerase III, gamma and tau subun... 41 0.025
UniRef50_A6DD60 Cluster: DNA polymerase III subunits gamma and t... 41 0.025
UniRef50_A6CH16 Cluster: DNA polymerase III gamma and tau subuni... 41 0.025
UniRef50_Q7QR65 Cluster: GLP_301_13398_14519; n=1; Giardia lambl... 41 0.025
UniRef50_Q97BC2 Cluster: Replication factor C large subunit; n=2... 41 0.025
UniRef50_P74876 Cluster: DNA polymerase III subunit tau (EC 2.7.... 41 0.025
UniRef50_UPI0000DB7733 Cluster: PREDICTED: similar to Werner hel... 40 0.032
UniRef50_Q7UQ66 Cluster: DNA polymerase III gamma and tau subuni... 40 0.032
UniRef50_Q6D7Z9 Cluster: DNA polymerase III subunit tau; n=1; Pe... 40 0.032
UniRef50_Q6ANB4 Cluster: Related to DNA polymerase III, subunit ... 40 0.032
UniRef50_A6G1D5 Cluster: Putative uncharacterized protein; n=1; ... 40 0.032
UniRef50_A1W8D6 Cluster: DNA polymerase III, subunits gamma and ... 40 0.032
UniRef50_A1K419 Cluster: DNA polymerase III subunit Tau; n=2; Az... 40 0.032
UniRef50_A1I8D7 Cluster: ATPases of the AAA+ class-like; n=1; Ca... 40 0.032
UniRef50_Q9SB72 Cluster: DNA polymerase III like protein; n=2; E... 40 0.032
UniRef50_A1CI50 Cluster: AAA family ATPase, putative; n=15; Pezi... 40 0.032
UniRef50_Q8RGJ6 Cluster: ATPase associated with chromosome archi... 40 0.043
UniRef50_A7GZC8 Cluster: Protein EbsC; n=13; Campylobacter|Rep: ... 40 0.043
UniRef50_A7DCF5 Cluster: Holliday junction DNA helicase RuvB pre... 40 0.043
UniRef50_Q0WNH1 Cluster: STICHEL; n=4; core eudicotyledons|Rep: ... 40 0.043
UniRef50_Q8SWI8 Cluster: Similarity to DNA HELICASE RUVB; n=1; E... 40 0.043
UniRef50_Q8SQU0 Cluster: HSP 101 RELATED PROTEIN; n=1; Encephali... 40 0.043
UniRef50_Q7S356 Cluster: Putative uncharacterized protein NCU091... 40 0.043
UniRef50_Q5AS54 Cluster: Putative uncharacterized protein; n=1; ... 40 0.043
UniRef50_Q97AM2 Cluster: Guanylate kinase; n=3; Thermoplasmatale... 40 0.043
UniRef50_UPI0000DB7A5E Cluster: PREDICTED: similar to chromosome... 29 0.046
UniRef50_Q67J53 Cluster: Lon-like ATP-dependent protease; n=14; ... 40 0.057
UniRef50_Q3AA20 Cluster: ATPase, AAA family; n=4; Clostridiales|... 40 0.057
UniRef50_Q0VNM5 Cluster: DNA polymerase III, gamma and tau subun... 40 0.057
UniRef50_Q0SS35 Cluster: ATPase, AAA family; n=3; Clostridium|Re... 40 0.057
UniRef50_A3Q184 Cluster: LAO/AO transport system ATPase; n=15; B... 40 0.057
UniRef50_A0RRQ8 Cluster: ATPase, AAA family; n=3; Campylobacter|... 40 0.057
UniRef50_Q9FK71 Cluster: Similarity to DNA polymerase III; n=3; ... 40 0.057
UniRef50_Q75DK2 Cluster: ABR019Cp; n=1; Eremothecium gossypii|Re... 40 0.057
UniRef50_A5DKE6 Cluster: Putative uncharacterized protein; n=1; ... 40 0.057
UniRef50_Q9PCH3 Cluster: DNA polymerase III subunit; n=12; Xanth... 39 0.075
UniRef50_Q7NIS3 Cluster: Glr2109 protein; n=13; Bacteria|Rep: Gl... 39 0.075
UniRef50_Q5L3X6 Cluster: DNA-directed DNA polymerase III gamma a... 39 0.075
UniRef50_Q5FKX4 Cluster: Chromosomal segregation helicase; n=113... 39 0.075
UniRef50_Q2JGD4 Cluster: DNA polymerase III, subunits gamma and ... 39 0.075
UniRef50_O83970 Cluster: DNA polymerase III, subunits gamma and ... 39 0.075
UniRef50_Q1FL61 Cluster: DNA polymerase III, delta prime subunit... 39 0.075
UniRef50_Q0LFS9 Cluster: DNA polymerase III, subunits gamma and ... 39 0.075
UniRef50_A6FN73 Cluster: Putative uncharacterized protein; n=1; ... 39 0.075
UniRef50_A0J630 Cluster: AAA ATPase, central region; n=1; Shewan... 39 0.075
UniRef50_Q8VZD3 Cluster: At1g73170/T18K17_17; n=9; Magnoliophyta... 39 0.075
UniRef50_A5ADM6 Cluster: Putative uncharacterized protein; n=1; ... 39 0.075
UniRef50_Q5CSY5 Cluster: Sen1p/ NAM7 like superfamily I RNA heli... 39 0.075
UniRef50_Q4UIQ4 Cluster: Replication factor C subunit, putative;... 39 0.075
UniRef50_A6SIK6 Cluster: Putative uncharacterized protein; n=1; ... 39 0.075
UniRef50_A3LXJ6 Cluster: DNA-dependent ATPase MGS1 (Maintenance ... 39 0.075
UniRef50_P50531 Cluster: Checkpoint protein rad17; n=1; Schizosa... 39 0.075
UniRef50_Q8T5T1 Cluster: Midasin; n=2; Giardia intestinalis|Rep:... 39 0.075
UniRef50_UPI0000D57862 Cluster: PREDICTED: similar to ATPase WRN... 39 0.099
UniRef50_Q4SLJ4 Cluster: Chromosome 15 SCAF14556, whole genome s... 39 0.099
UniRef50_Q8RDI6 Cluster: DNA polymerase III, gamma/tau subunits;... 39 0.099
UniRef50_Q8NTR0 Cluster: DNA polymerase III, gamma/tau subunits;... 39 0.099
UniRef50_Q609A7 Cluster: DNA polymerase III, gamma and tau subun... 39 0.099
UniRef50_Q3W9P5 Cluster: ATPas; n=1; Frankia sp. EAN1pec|Rep: AT... 39 0.099
UniRef50_Q28US4 Cluster: AAA ATPase protein; n=11; Proteobacteri... 39 0.099
UniRef50_A6DEF7 Cluster: ENDOPEPTIDASE CLP ATP-BINDING CHAIN A; ... 39 0.099
UniRef50_A5UZV8 Cluster: AAA ATPase, central domain protein; n=1... 39 0.099
UniRef50_A1IEP1 Cluster: ATPase, AAA family; n=2; Bacteria|Rep: ... 39 0.099
UniRef50_A0GXK7 Cluster: DNA polymerase III, subunits gamma and ... 39 0.099
UniRef50_A3FQ95 Cluster: Replication factor C subunit 5, putativ... 39 0.099
UniRef50_Q6CV97 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 39 0.099
UniRef50_A7E9C6 Cluster: Putative uncharacterized protein; n=1; ... 39 0.099
UniRef50_Q5FLX2 Cluster: Holliday junction ATP-dependent DNA hel... 39 0.099
UniRef50_P15026 Cluster: Insertion sequence IS21 putative ATP-bi... 39 0.099
UniRef50_UPI0000DB70D6 Cluster: PREDICTED: similar to Activator ... 38 0.13
UniRef50_Q983G8 Cluster: Transcriptional regulator; n=8; Alphapr... 38 0.13
UniRef50_Q18C99 Cluster: DNA polymerase III subunit gamma/tau; n... 38 0.13
UniRef50_A0UHY5 Cluster: AAA ATPase; n=1; Burkholderia multivora... 38 0.13
UniRef50_Q5CXW3 Cluster: RF-C paralog (Ctf18p) AAA+ ATpase; n=2;... 38 0.13
UniRef50_Q4N3L0 Cluster: Replication factor C, putative; n=3; Th... 38 0.13
UniRef50_Q6BP73 Cluster: Debaryomyces hansenii chromosome E of s... 38 0.13
UniRef50_P63577 Cluster: Uncharacterized protein Rv1496/MT1543; ... 38 0.13
UniRef50_Q8DWI4 Cluster: Holliday junction ATP-dependent DNA hel... 38 0.13
UniRef50_UPI00004999D6 Cluster: AAA family ATPase; n=1; Entamoeb... 38 0.17
UniRef50_Q8CXU0 Cluster: Uncharacterized ATPase related to the h... 38 0.17
UniRef50_Q74CH7 Cluster: MoxR family protein; n=9; Deltaproteoba... 38 0.17
UniRef50_Q1NCJ8 Cluster: Superfamily I DNA and RNA helicase and ... 38 0.17
UniRef50_Q0EY57 Cluster: ATPase; n=1; Mariprofundus ferrooxydans... 38 0.17
UniRef50_A0L8T4 Cluster: DNA polymerase III, delta prime subunit... 38 0.17
UniRef50_Q9LTA9 Cluster: CLP protease regulatory subunit CLPX-li... 38 0.17
UniRef50_Q8X080 Cluster: Related to replication factor C protein... 38 0.17
UniRef50_A1C8D4 Cluster: Cell cycle checkpoint protein rad17; n=... 38 0.17
UniRef50_Q607D1 Cluster: ATP-dependent Clp protease ATP-binding ... 38 0.17
UniRef50_UPI0000D56D44 Cluster: PREDICTED: similar to CG33122-PA... 38 0.23
UniRef50_Q896F9 Cluster: ATPase associated with chromosome archi... 38 0.23
UniRef50_Q7UK75 Cluster: DNA polymerase III, tau/gamma subunit; ... 38 0.23
UniRef50_Q73G99 Cluster: DNA polymerase III, gamma and tau subun... 38 0.23
UniRef50_Q9AIX4 Cluster: DNA polymerase III-like protein; n=2; W... 38 0.23
UniRef50_Q3WEK6 Cluster: DNA-directed DNA polymerase; n=2; Frank... 38 0.23
UniRef50_Q1ILP8 Cluster: ATPase associated with various cellular... 38 0.23
UniRef50_A5IXK5 Cluster: ATPase, AAA family; n=1; Mycoplasma aga... 38 0.23
UniRef50_A4E9C6 Cluster: Putative uncharacterized protein; n=1; ... 38 0.23
UniRef50_A7PHX9 Cluster: Chromosome chr13 scaffold_17, whole gen... 38 0.23
UniRef50_A6MVQ4 Cluster: DNA polymerase III; n=1; Rhodomonas sal... 38 0.23
UniRef50_A5ANB7 Cluster: Putative uncharacterized protein; n=1; ... 38 0.23
UniRef50_Q7QUE5 Cluster: GLP_59_18656_20185; n=1; Giardia lambli... 38 0.23
UniRef50_A7ANZ3 Cluster: Putative uncharacterized protein; n=1; ... 38 0.23
UniRef50_A0CPS3 Cluster: Chromosome undetermined scaffold_23, wh... 38 0.23
UniRef50_P78622 Cluster: Replication factor C like protein; n=5;... 38 0.23
UniRef50_Q74MS3 Cluster: NEQ234; n=1; Nanoarchaeum equitans|Rep:... 38 0.23
UniRef50_P31540 Cluster: Heat shock protein HSP98; n=23; Dikarya... 38 0.23
UniRef50_P43746 Cluster: DNA polymerase III subunit gamma/tau; n... 38 0.23
UniRef50_Q7NAZ3 Cluster: Chaperone protein clpB; n=8; Mollicutes... 38 0.23
UniRef50_UPI00015B9329 Cluster: UPI00015B9329 related cluster; n... 37 0.30
UniRef50_UPI000058605A Cluster: PREDICTED: similar to replicatio... 37 0.30
UniRef50_Q9QXI2 Cluster: Replication factor C subunit 2; n=8; Eu... 37 0.30
UniRef50_Q7NAN3 Cluster: RuvB; n=1; Mycoplasma gallisepticum|Rep... 37 0.30
UniRef50_Q7MUS1 Cluster: DNA polymerase III, gamma and tau subun... 37 0.30
UniRef50_Q31JI2 Cluster: ATPase associated with various cellular... 37 0.30
UniRef50_Q0EXX3 Cluster: DNA polymerase III subunits gamma and t... 37 0.30
UniRef50_A7H7E2 Cluster: Putative phosphohistidine phosphatase, ... 37 0.30
UniRef50_A6W316 Cluster: AAA ATPase central domain protein; n=4;... 37 0.30
UniRef50_A4SWQ4 Cluster: DNA polymerase III, subunits gamma and ... 37 0.30
UniRef50_A4SMN2 Cluster: DNA polymerase III, subunits gamma and ... 37 0.30
UniRef50_A4EPD3 Cluster: ATPase; n=2; Rhodobacteraceae|Rep: ATPa... 37 0.30
UniRef50_A3IFI7 Cluster: Putative uncharacterized protein; n=1; ... 37 0.30
UniRef50_Q9AYK3 Cluster: Putative replication factor; n=3; Oryza... 37 0.30
UniRef50_Q6YPF5 Cluster: Putative DNA polymerase III like protei... 37 0.30
UniRef50_Q2QW40 Cluster: ATPase, AAA family protein, expressed; ... 37 0.30
UniRef50_Q1ZXM6 Cluster: AAA ATPase domain-containing protein; n... 37 0.30
UniRef50_Q9A1Y1 Cluster: Holliday junction ATP-dependent DNA hel... 37 0.30
UniRef50_P61530 Cluster: Holliday junction ATP-dependent DNA hel... 37 0.30
UniRef50_UPI00005F1A9A Cluster: transposition helper protein, IS... 37 0.40
UniRef50_Q88WS5 Cluster: Chromosome segregation helicase; n=31; ... 37 0.40
UniRef50_Q73L29 Cluster: ATPase, AAA family; n=2; Treponema|Rep:... 37 0.40
UniRef50_Q73K31 Cluster: DNA polymerase III, gamma and tau subun... 37 0.40
UniRef50_Q6MDZ7 Cluster: Probable DNA-directed DNA polymerase II... 37 0.40
UniRef50_Q2RZH6 Cluster: DNA polymerase III, subunits gamma and ... 37 0.40
UniRef50_Q1NPM4 Cluster: AAA ATPase, central region; n=1; delta ... 37 0.40
UniRef50_A7CY80 Cluster: LAO/AO transport system ATPase; n=1; Op... 37 0.40
UniRef50_A6BHP0 Cluster: ATP-dependent protease La; n=2; Clostri... 37 0.40
UniRef50_A5GNS9 Cluster: ATPase related to the helicase subunit ... 37 0.40
UniRef50_A5CF91 Cluster: DNA polymerase III gamma and tau chains... 37 0.40
UniRef50_A3XAA2 Cluster: ATP-dependent Zn protease; n=1; Roseoba... 37 0.40
UniRef50_Q95WV5 Cluster: DNA replication accessory factor Cutlet... 37 0.40
UniRef50_Q0UKS2 Cluster: Putative uncharacterized protein; n=1; ... 37 0.40
UniRef50_A7TRJ1 Cluster: Putative uncharacterized protein; n=1; ... 37 0.40
UniRef50_A7EWC5 Cluster: Putative uncharacterized protein; n=1; ... 37 0.40
UniRef50_A5DZ06 Cluster: Putative uncharacterized protein; n=1; ... 37 0.40
UniRef50_A2QK40 Cluster: Similarity: belongs to the superfamily ... 37 0.40
UniRef50_Q7UPG4 Cluster: Holliday junction ATP-dependent DNA hel... 37 0.40
UniRef50_Q8Y6Z8 Cluster: Holliday junction ATP-dependent DNA hel... 37 0.40
UniRef50_UPI0000499E26 Cluster: AAA family ATPase; n=1; Entamoeb... 36 0.53
UniRef50_Q9RKL5 Cluster: DNA polymerase III subunit gamma; n=2; ... 36 0.53
UniRef50_Q9PQU7 Cluster: Conserved hypothetical ATP/GTP-binding ... 36 0.53
UniRef50_Q8G6Y0 Cluster: DNA polymerase III subunit gamma/tau; n... 36 0.53
UniRef50_Q897H3 Cluster: Regulatory protein moxR; n=1; Clostridi... 36 0.53
UniRef50_Q83FL2 Cluster: DNA polymerase III gamma and tau subuni... 36 0.53
UniRef50_Q2GI84 Cluster: DNA polymerase III, subunits gamma and ... 36 0.53
UniRef50_A6EJ04 Cluster: Magnesium chelatase, subunit ChlI; n=2;... 36 0.53
UniRef50_A1ZU25 Cluster: AAA superfamily ATPase; n=1; Microscill... 36 0.53
UniRef50_A0LGK0 Cluster: AAA ATPase, central domain protein; n=1... 36 0.53
UniRef50_Q9SN33 Cluster: Putative uncharacterized protein F28A21... 36 0.53
UniRef50_Q5CPV9 Cluster: DNA replication repC1, AAA+ ATpase with... 36 0.53
UniRef50_Q54HF4 Cluster: Putative uncharacterized protein; n=2; ... 36 0.53
UniRef50_A2DH92 Cluster: Transcription factor, putative; n=1; Tr... 36 0.53
UniRef50_Q5A9D1 Cluster: Putative uncharacterized protein; n=2; ... 36 0.53
UniRef50_P45262 Cluster: Uncharacterized protein HI1590; n=125; ... 36 0.53
UniRef50_Q4L3I4 Cluster: ATP-dependent Clp protease ATP-binding ... 36 0.53
UniRef50_Q5FHW6 Cluster: ATP-dependent protease; n=4; Lactobacil... 36 0.70
UniRef50_Q21L32 Cluster: DNA polymerase III, subunits gamma and ... 36 0.70
UniRef50_A7CNR8 Cluster: ATPase associated with various cellular... 36 0.70
UniRef50_A6M262 Cluster: ABC transporter related; n=1; Clostridi... 36 0.70
UniRef50_A6EX05 Cluster: DNA polymerase III subunits gamma and t... 36 0.70
UniRef50_A6EB50 Cluster: ABC transporter, ATP-binding/permease p... 36 0.70
UniRef50_A3WR60 Cluster: DNA polymerase III subunits gamma and t... 36 0.70
UniRef50_A3PPN4 Cluster: Superfamily I DNA and RNA helicases and... 36 0.70
UniRef50_A1U128 Cluster: DNA polymerase III, subunits gamma and ... 36 0.70
UniRef50_A1K8V0 Cluster: Conserved hypothetical ATPase; n=1; Azo... 36 0.70
UniRef50_A0NHS0 Cluster: ATPase, AAA family; n=3; Bacteria|Rep: ... 36 0.70
UniRef50_Q55F22 Cluster: Putative uncharacterized protein; n=4; ... 36 0.70
UniRef50_Q4FYX5 Cluster: Serine peptidase, putative; n=7; Trypan... 36 0.70
UniRef50_Q22W14 Cluster: Replication factor C subunit, putative;... 36 0.70
UniRef50_A2FVE1 Cluster: ATPase, AAA family protein; n=2; Tricho... 36 0.70
UniRef50_Q0U9J0 Cluster: Putative uncharacterized protein; n=1; ... 36 0.70
UniRef50_A5DR08 Cluster: Putative uncharacterized protein; n=1; ... 36 0.70
>UniRef50_A7SA25 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 401
Score = 220 bits (538), Expect = 2e-56
Identities = 105/126 (83%), Positives = 112/126 (88%)
Frame = +3
Query: 138 SSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCL 317
+ K LPW+EKYRP +IVGNE+TVSRL VFA+ GN PNIIIAGPPG GKTT+ILCL
Sbjct: 47 TKKGFELPWVEKYRPTKLHEIVGNEETVSRLEVFAQQGNVPNIIIAGPPGTGKTTSILCL 106
Query: 318 ARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG 497
ARALLGVS KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP GRHKI+ILDEADSMTDG
Sbjct: 107 ARALLGVSLKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDG 166
Query: 498 AQQALR 515
AQQALR
Sbjct: 167 AQQALR 172
Score = 37.5 bits (83), Expect = 0.23
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 517 RTMELYSSTTRFALAANNSEK 579
RTME+YS TTRFALA N S+K
Sbjct: 173 RTMEIYSKTTRFALACNTSDK 193
>UniRef50_P35250 Cluster: Replication factor C subunit 2; n=103;
Eukaryota|Rep: Replication factor C subunit 2 - Homo
sapiens (Human)
Length = 354
Score = 219 bits (535), Expect = 4e-56
Identities = 104/128 (81%), Positives = 113/128 (88%)
Frame = +3
Query: 132 PSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTIL 311
P S+ LPW+EKYRP ++IVGNEDTVSRL VFA+ GN PNIIIAGPPG GKTT+IL
Sbjct: 28 PGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSIL 87
Query: 312 CLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT 491
CLARALLG + KDA+LELNASNDRGIDVVRNKIKMFAQQKVTLP GRHKI+ILDEADSMT
Sbjct: 88 CLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMT 147
Query: 492 DGAQQALR 515
DGAQQALR
Sbjct: 148 DGAQQALR 155
Score = 36.7 bits (81), Expect = 0.40
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 517 RTMELYSSTTRFALAANNSEK 579
RTME+YS TTRFALA N S+K
Sbjct: 156 RTMEIYSKTTRFALACNASDK 176
>UniRef50_Q4TFR9 Cluster: Chromosome undetermined SCAF4252, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF4252,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 331
Score = 195 bits (476), Expect = 5e-49
Identities = 95/119 (79%), Positives = 103/119 (86%), Gaps = 2/119 (1%)
Frame = +3
Query: 135 SSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILC 314
S++ + LPW+EKYRP D IVGNE+TVSRL VFA+ GN PNIIIAGPPG GKTT+ILC
Sbjct: 11 STAGTYELPWVEKYRPLKLDQIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILC 70
Query: 315 LARALLGVSFKDAVLELNASND--RGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADS 485
LARALLG S KDAVLELNASND RGIDVVRNKIKMFAQQKVTLP GRHKI+ILDEADS
Sbjct: 71 LARALLGASMKDAVLELNASNDRHRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADS 129
>UniRef50_A0EG83 Cluster: Chromosome undetermined scaffold_95, whole
genome shotgun sequence; n=2; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_95, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 384
Score = 176 bits (428), Expect = 4e-43
Identities = 80/121 (66%), Positives = 100/121 (82%)
Frame = +3
Query: 153 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332
NL W+EKYRP+T D++ GN D V +L AK GN PNII+ GPPG+GKT+++LCLAR +L
Sbjct: 4 NLIWLEKYRPKTLDEVHGNSDIVDKLRAIAKMGNLPNIILVGPPGIGKTSSVLCLARQIL 63
Query: 333 GVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQAL 512
G S K++VLELNAS+DRGI+ VR +IK FAQ+KV L G+HKIVILDEADS+T+GAQQAL
Sbjct: 64 GDSIKESVLELNASDDRGIETVREQIKGFAQKKVNLQEGQHKIVILDEADSLTEGAQQAL 123
Query: 513 R 515
R
Sbjct: 124 R 124
>UniRef50_Q176Y6 Cluster: Replication factor C, 37kD-subunit,
putative; n=5; Eukaryota|Rep: Replication factor C,
37kD-subunit, putative - Aedes aegypti (Yellowfever
mosquito)
Length = 147
Score = 175 bits (425), Expect = 8e-43
Identities = 82/99 (82%), Positives = 91/99 (91%)
Frame = +3
Query: 135 SSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILC 314
++SK +LPWIEKYRPQ F++IVGNEDTVSRL VFA GNAPNIIIAGPPGVGKTTTILC
Sbjct: 20 AASKKKSLPWIEKYRPQKFEEIVGNEDTVSRLGVFATQGNAPNIIIAGPPGVGKTTTILC 79
Query: 315 LARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQK 431
LAR LLG +F++AVLELNASN+RGIDVVRNKIKMFAQQK
Sbjct: 80 LARILLGENFREAVLELNASNERGIDVVRNKIKMFAQQK 118
>UniRef50_Q8WSL8 Cluster: Replication factor C subunit 4; n=6;
Plasmodium|Rep: Replication factor C subunit 4 -
Plasmodium falciparum
Length = 336
Score = 157 bits (381), Expect = 2e-37
Identities = 70/118 (59%), Positives = 93/118 (78%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS 341
WIEKYRP+ D++VGN ++ L +GN PN+++AG PG GKTT+ILCLA +LG
Sbjct: 18 WIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLASEMLGNQ 77
Query: 342 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 515
K AVLELNAS+DRGI+V+R++IK FA++ ++LPPG+HKI+ILDE DSMT AQQ+LR
Sbjct: 78 AKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLR 135
Score = 37.1 bits (82), Expect = 0.30
Identities = 17/21 (80%), Positives = 17/21 (80%)
Frame = +1
Query: 517 RTMELYSSTTRFALAANNSEK 579
R MELYS TTRFALA N SEK
Sbjct: 136 RIMELYSDTTRFALACNQSEK 156
>UniRef50_A4I6D8 Cluster: Replication factor C, subunit 4, putative;
n=4; Trypanosomatidae|Rep: Replication factor C, subunit
4, putative - Leishmania infantum
Length = 360
Score = 150 bits (363), Expect = 3e-35
Identities = 88/156 (56%), Positives = 101/156 (64%), Gaps = 33/156 (21%)
Frame = +3
Query: 147 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARA 326
+ N PW+EKYRPQT DIVGN + +SRL V AK GN PN+++ GPPG GKTT++LCLAR
Sbjct: 3 TVNTPWVEKYRPQTVADIVGNTEAISRLQVIAKEGNLPNLLLCGPPGTGKTTSMLCLARD 62
Query: 327 LL---------GVS--------FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP---- 443
LL G S KDAVLELNAS+DRG+DVVR KIK+FAQ K TLP
Sbjct: 63 LLLQSTDTGSAGASPGGATKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPRKFF 122
Query: 444 -PGR-----------HKIVILDEADSMTDGAQQALR 515
G HKIV+LDEADSMT AQQALR
Sbjct: 123 STGEGVAKDDHVVHLHKIVLLDEADSMTPAAQQALR 158
Score = 36.7 bits (81), Expect = 0.40
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 517 RTMELYSSTTRFALAANNSEK 579
RTMEL+SSTTRFA A NNS +
Sbjct: 159 RTMELHSSTTRFAFACNNSSR 179
>UniRef50_UPI0000499C0F Cluster: Activator 1 40 kDa subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: Activator 1 40 kDa
subunit - Entamoeba histolytica HM-1:IMSS
Length = 315
Score = 143 bits (346), Expect = 3e-33
Identities = 67/125 (53%), Positives = 89/125 (71%)
Frame = +3
Query: 141 SKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLA 320
SK +PW+EKYRP+ D+I+GN D + L F + P++++ G PG+GKTT+I CLA
Sbjct: 2 SKIQAIPWVEKYRPKLLDEIIGNVDIIKTLKSFRDSKQFPHLLLCGQPGIGKTTSIHCLA 61
Query: 321 RALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGA 500
LL +KDAVLELNAS++RGI+ +R+ IK F ++K+ LP KIVILDEADSMT A
Sbjct: 62 HELLKDRYKDAVLELNASDERGIETIRSTIKSFCEKKLVLPDNLPKIVILDEADSMTTAA 121
Query: 501 QQALR 515
QALR
Sbjct: 122 FQALR 126
Score = 33.1 bits (72), Expect = 4.9
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1
Query: 517 RTMELYSSTTRFALAANNSEK 579
RTME++S TTRF LA N EK
Sbjct: 127 RTMEIHSKTTRFVLACNTPEK 147
>UniRef50_Q7QWA3 Cluster: GLP_177_25642_24674; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_177_25642_24674 - Giardia lamblia
ATCC 50803
Length = 322
Score = 143 bits (346), Expect = 3e-33
Identities = 66/120 (55%), Positives = 87/120 (72%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG 335
LP+IE+YRP+T D ++GN + ++RL FA GN PNI+ AG PG+GKTT LCLA +LG
Sbjct: 4 LPFIERYRPRTLDGLIGNPEILARLRYFAAQGNLPNILFAGGPGLGKTTIALCLANQMLG 63
Query: 336 VSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 515
A LELNAS++R + +R K+K FAQ++VTLP G K+V LDE D+MT+ AQQ LR
Sbjct: 64 AHRSVAFLELNASDERNVSDIRAKVKTFAQKQVTLPAGIQKLVFLDECDAMTEAAQQVLR 123
>UniRef50_Q5K796 Cluster: DNA replication factor, putative; n=5;
Fungi/Metazoa group|Rep: DNA replication factor,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 373
Score = 140 bits (340), Expect = 2e-32
Identities = 66/120 (55%), Positives = 86/120 (71%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG 335
LPW+EKYRP + DD+V ++D S + F + G P++++ GPPG GKT+T+L LAR L G
Sbjct: 54 LPWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYG 113
Query: 336 VSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 515
+++ +LELNAS+DRGIDVVR +IK FA KV G K+VILDEAD MT AQ ALR
Sbjct: 114 PAYRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKG-FKLVILDEADMMTQAAQSALR 172
>UniRef50_P38629 Cluster: Replication factor C subunit 3; n=15;
Dikarya|Rep: Replication factor C subunit 3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 340
Score = 140 bits (340), Expect = 2e-32
Identities = 65/135 (48%), Positives = 91/135 (67%)
Frame = +3
Query: 153 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332
NLPW+EKYRP+T D++ G + ++ + F G P+++ GPPG GKT+TI+ LAR +
Sbjct: 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71
Query: 333 GVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQAL 512
G ++ + VLELNAS+DRGIDVVRN+IK FA + G K++ILDEAD+MT+ AQ AL
Sbjct: 72 GKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEADAMTNAAQNAL 130
Query: 513 RTHHGAVFQYNSFCI 557
R + FC+
Sbjct: 131 RRVIERYTKNTRFCV 145
>UniRef50_P40937 Cluster: Replication factor C subunit 5; n=51;
Eukaryota|Rep: Replication factor C subunit 5 - Homo
sapiens (Human)
Length = 340
Score = 136 bits (328), Expect = 5e-31
Identities = 67/148 (45%), Positives = 94/148 (63%), Gaps = 1/148 (0%)
Frame = +3
Query: 117 KKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGK 296
K+Q +P+++K NLPW+EKYRPQT +D++ ++D +S + F P++++ GPPG GK
Sbjct: 7 KQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGK 66
Query: 297 TTTILCLARALL-GVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 473
T+TIL A+ L F VLELNAS+DRGID++R I FA + G K+VILD
Sbjct: 67 TSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILD 125
Query: 474 EADSMTDGAQQALRTHHGAVFQYNSFCI 557
EAD+MT AQ ALR + FC+
Sbjct: 126 EADAMTQDAQNALRRVIEKFTENTRFCL 153
>UniRef50_A2E6V9 Cluster: ATPase, AAA family protein; n=2;
Trichomonas vaginalis G3|Rep: ATPase, AAA family protein
- Trichomonas vaginalis G3
Length = 325
Score = 134 bits (323), Expect = 2e-30
Identities = 69/128 (53%), Positives = 86/128 (67%), Gaps = 2/128 (1%)
Frame = +3
Query: 138 SSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCL 317
S + NLPW+EKYRP+ DDIV E+ V L +TG+ P++I GPPG GKT+ L L
Sbjct: 2 SKTADNLPWVEKYRPKNLDDIVQQEEAVKALKTTLETGDLPHLIFHGPPGTGKTSLALAL 61
Query: 318 ARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMT 491
R+L G F+ V ELNAS++RGID VR+ IK FA + +P G+ KIVILDEADSMT
Sbjct: 62 CRSLFGDDFRLRVKELNASDERGIDAVRSSIKEFA--SLAVPNGKIPFKIVILDEADSMT 119
Query: 492 DGAQQALR 515
AQ ALR
Sbjct: 120 SAAQNALR 127
>UniRef50_Q9UXF5 Cluster: Replication factor C small subunit; n=18;
Thermoprotei|Rep: Replication factor C small subunit -
Sulfolobus solfataricus
Length = 330
Score = 132 bits (320), Expect = 4e-30
Identities = 67/128 (52%), Positives = 87/128 (67%), Gaps = 2/128 (1%)
Frame = +3
Query: 138 SSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCL 317
S+K + W EKYRP+T DDIV + + RL F K N P+++ AGPPG GKTT L L
Sbjct: 2 STKVEEILWAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALAL 61
Query: 318 ARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMT 491
L G ++ + LELNAS++RGIDV+RNK+K FA+ T+ PG K+V+LDEAD+MT
Sbjct: 62 VHDLYGDNYTEYFLELNASDERGIDVIRNKVKEFAR---TVIPGDIPFKVVLLDEADNMT 118
Query: 492 DGAQQALR 515
AQQALR
Sbjct: 119 ADAQQALR 126
>UniRef50_Q245Y3 Cluster: ATPase, AAA family protein; n=2;
Oligohymenophorea|Rep: ATPase, AAA family protein -
Tetrahymena thermophila SB210
Length = 373
Score = 131 bits (316), Expect = 1e-29
Identities = 69/154 (44%), Positives = 95/154 (61%), Gaps = 7/154 (4%)
Frame = +3
Query: 117 KKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGK 296
+++ K + LPW+EKYRP +++ E+ + L +GN P++I+ GPPG GK
Sbjct: 29 EEETKTEELNNNLLPWVEKYRPNKIEEVSYQEEVIKSLQGVLLSGNLPHLILHGPPGTGK 88
Query: 297 TTTILCLARALLGVSF-KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR------H 455
T++IL A+ L G +F K+ +LELNAS+DRGI +VR+KIK FAQQ V+ P +
Sbjct: 89 TSSILAFAKQLYGPTFYKERILELNASDDRGIQIVRDKIKKFAQQVVSKNPDKSFKCPNF 148
Query: 456 KIVILDEADSMTDGAQQALRTHHGAVFQYNSFCI 557
KI+ILDEADSMT AQ ALR FCI
Sbjct: 149 KIIILDEADSMTTEAQSALRRIIEDTSSTTRFCI 182
>UniRef50_Q2NH89 Cluster: Replication factor C small subunit; n=2;
Methanobacteriaceae|Rep: Replication factor C small
subunit - Methanosphaera stadtmanae (strain DSM 3091)
Length = 321
Score = 130 bits (313), Expect = 3e-29
Identities = 68/134 (50%), Positives = 86/134 (64%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGV 338
PW+EKYRPQT DD+VG E V RL + + + PNI+ G GVGKTT L LA++LLG
Sbjct: 4 PWVEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNIMFTGFAGVGKTTCALALAKSLLGE 63
Query: 339 SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRT 518
++ LELNAS+ RGID VRN+IK F + K P R I+ LDE D+MT AQQALR
Sbjct: 64 YWQQNFLELNASDARGIDTVRNEIKSFCKLKAVGAPFR--IIFLDEVDNMTKDAQQALRR 121
Query: 519 HHGAVFQYNSFCIS 560
+ +SF +S
Sbjct: 122 EMEMYTKTSSFILS 135
>UniRef50_Q7T2C9 Cluster: Rfc4 protein; n=34; Fungi/Metazoa
group|Rep: Rfc4 protein - Danio rerio (Zebrafish)
(Brachydanio rerio)
Length = 202
Score = 126 bits (305), Expect = 3e-28
Identities = 74/160 (46%), Positives = 96/160 (60%), Gaps = 14/160 (8%)
Frame = +3
Query: 120 KQVKPSSSKSTN-------LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAG 278
K KPSSS S+ +PW+EKYRP+ D++ E+ V+ L + + PN++ G
Sbjct: 14 KAQKPSSSSSSGGEKKQRAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYG 73
Query: 279 PPGVGKTTTILCLARALLGVS-FKDAVLELNASNDRGIDVVRNKIKMFAQQKV--TLPPG 449
PPG GKT+TIL AR L G ++ VLELNAS++RGI VVR K+K FAQ V T P G
Sbjct: 74 PPGTGKTSTILAAARELYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDG 133
Query: 450 R----HKIVILDEADSMTDGAQQALRTHHGAVFQYNSFCI 557
+ KI+ILDEADSMT AQ ALR + FC+
Sbjct: 134 KTCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCL 173
>UniRef50_Q2UJ68 Cluster: Replication factor C; n=15;
Pezizomycotina|Rep: Replication factor C - Aspergillus
oryzae
Length = 398
Score = 126 bits (305), Expect = 3e-28
Identities = 68/147 (46%), Positives = 91/147 (61%), Gaps = 12/147 (8%)
Frame = +3
Query: 153 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332
NLPW+EKYRP T DD+ G++D ++ + F P++++ GPPG GKT+TIL LAR +
Sbjct: 42 NLPWVEKYRPNTLDDVSGHQDILATINRFVDANRLPHLLLYGPPGTGKTSTILALARRIY 101
Query: 333 G-VSFKDAVLELNASNDRGIDVVRNKIKMFAQQK--VTLPP---------GRHKIVILDE 476
G + + VLELNAS+DRGIDVVR +IK FA K ++ P +K++ILDE
Sbjct: 102 GSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPQPTSGGSSLASYKLIILDE 161
Query: 477 ADSMTDGAQQALRTHHGAVFQYNSFCI 557
AD+MT AQ ALR FCI
Sbjct: 162 ADAMTATAQMALRRIMEKYTANTRFCI 188
>UniRef50_UPI0000DB75B4 Cluster: PREDICTED: similar to CG8142-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to CG8142-PA
- Apis mellifera
Length = 310
Score = 126 bits (304), Expect = 4e-28
Identities = 74/160 (46%), Positives = 92/160 (57%), Gaps = 12/160 (7%)
Frame = +3
Query: 114 EKKQVKPSSSKSTNL----PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGP 281
E K+V S SK PW+EKYRP+ +D+V + V L K G+ PN++ GP
Sbjct: 14 EFKKVSNSRSKEERSGPAPPWVEKYRPKNVEDVVEQTEVVEVLRQCLKGGDFPNLLFYGP 73
Query: 282 PGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKV--------T 437
PG GKT+TIL AR L G +K+ VLELNAS++RGI VVR KIK FAQ +
Sbjct: 74 PGTGKTSTILAAARQLFGSLYKERVLELNASDERGIQVVREKIKSFAQLTAGGMRDDGKS 133
Query: 438 LPPGRHKIVILDEADSMTDGAQQALRTHHGAVFQYNSFCI 557
PP KI++LDEADSMT AQ ALR FC+
Sbjct: 134 CPP--FKIIVLDEADSMTGAAQAALRRTMEKESHSTRFCL 171
>UniRef50_A0CAF3 Cluster: Chromosome undetermined scaffold_161,
whole genome shotgun sequence; n=2;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_161, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 340
Score = 125 bits (302), Expect = 7e-28
Identities = 61/130 (46%), Positives = 88/130 (67%), Gaps = 4/130 (3%)
Frame = +3
Query: 138 SSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCL 317
+ K+ N+PWIEKYRP T D+++ +E+ V+ + F + PN+++ GPPG GKT+TI+ L
Sbjct: 9 NKKNKNIPWIEKYRPSTLDEVISHEEIVATIKKFNEKNRLPNLLLYGPPGTGKTSTIIAL 68
Query: 318 ARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVTLPPGRH---KIVILDEADS 485
A+ + + VLELNAS++RGI+ VR IK FA+ Q T ++ K+VILDEAD+
Sbjct: 69 AKQIYQNKYNQMVLELNASDERGINTVRETIKGFAESQSFTFTKDKNTSIKLVILDEADA 128
Query: 486 MTDGAQQALR 515
MT AQ ALR
Sbjct: 129 MTAAAQFALR 138
>UniRef50_A5E7K0 Cluster: Activator 1 41 kDa subunit; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Activator 1
41 kDa subunit - Lodderomyces elongisporus (Yeast)
(Saccharomyces elongisporus)
Length = 402
Score = 124 bits (299), Expect = 2e-27
Identities = 67/139 (48%), Positives = 87/139 (62%), Gaps = 10/139 (7%)
Frame = +3
Query: 129 KPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTI 308
K K + PW+EKYRP+ DD+ + V L TGN P+++ GPPG GKT+TI
Sbjct: 26 KYDEDKLHHTPWVEKYRPKNLDDVASQDHAVKVLKKQISTGNLPHMLFYGPPGTGKTSTI 85
Query: 309 LCLARALLGVS-FKDAVLELNASNDRGIDVVRNKIKMFAQQKVT---------LPPGRHK 458
L LA+ L G + +K VLELNAS++RGI +VR KIK FA+ V+ P +K
Sbjct: 86 LALAKQLYGPNLYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTEDDLRNYPCPPYK 145
Query: 459 IVILDEADSMTDGAQQALR 515
I+ILDEADSMT+ AQ ALR
Sbjct: 146 IIILDEADSMTNDAQSALR 164
>UniRef50_UPI000049A58F Cluster: activator 1 36 kda subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: activator 1 36 kda
subunit - Entamoeba histolytica HM-1:IMSS
Length = 325
Score = 123 bits (297), Expect = 3e-27
Identities = 61/121 (50%), Positives = 78/121 (64%)
Frame = +3
Query: 153 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332
+LPW+EKYRP T D I G+E + L F P+++ GPPG GKTTT L + + L
Sbjct: 2 SLPWVEKYRPSTTDGIFGHEYILESLKQFINANQIPHMLFYGPPGTGKTTTALAIVKQLC 61
Query: 333 GVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQAL 512
G F VLELNAS++RGIDVVR++IK FA + TL K +ILDE+D +T AQ AL
Sbjct: 62 GTKFSALVLELNASDERGIDVVRDQIKSFASTR-TLYTNCTKFIILDESDKLTKDAQNAL 120
Query: 513 R 515
R
Sbjct: 121 R 121
>UniRef50_Q8QNA5 Cluster: EsV-1-182; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-182 - Ectocarpus siliculosus virus 1
Length = 326
Score = 123 bits (297), Expect = 3e-27
Identities = 66/137 (48%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGV 338
PW+EKYRP+ D+V ++ L KTG+ P+++ GPPG GKT+TIL LAR LLG
Sbjct: 3 PWVEKYRPRRVRDVVHHDHLKRVLNGAEKTGDLPHLLFHGPPGTGKTSTILALARTLLGE 62
Query: 339 -SFKDAVLELNASNDRGIDVVRNKIKMFAQQKV-TLPPG--RHKIVILDEADSMTDGAQQ 506
+ ++ VLELNAS++RG+DVVR+KIK F++ + + PG K+VILDEAD+MT AQ
Sbjct: 63 GNMRERVLELNASDERGLDVVRDKIKTFSKMSISSFQPGCPPFKLVILDEADTMTADAQS 122
Query: 507 ALRTHHGAVFQYNSFCI 557
ALR FC+
Sbjct: 123 ALRRTMETHSVVTRFCL 139
>UniRef50_Q9GR09 Cluster: Replication factor C3; n=9;
Aconoidasida|Rep: Replication factor C3 - Plasmodium
falciparum
Length = 344
Score = 122 bits (293), Expect = 8e-27
Identities = 58/122 (47%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGV 338
PW+EKYRP +DI+ +E +S + F + G P++++ GPPG GKT+TIL + + L G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGD 73
Query: 339 SFKDAVLELNASNDRGIDVVRNKIKMFAQQK---VTLPPGRHKIVILDEADSMTDGAQQA 509
VLELNAS+DRGI+V+R++IK FA+ K T K++ILDEAD MT AQ A
Sbjct: 74 KRSSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNA 133
Query: 510 LR 515
+R
Sbjct: 134 MR 135
>UniRef50_P35249 Cluster: Replication factor C subunit 4; n=34;
Eukaryota|Rep: Replication factor C subunit 4 - Homo
sapiens (Human)
Length = 363
Score = 121 bits (292), Expect = 1e-26
Identities = 68/147 (46%), Positives = 89/147 (60%), Gaps = 7/147 (4%)
Frame = +3
Query: 138 SSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCL 317
+ K+ +PW+EKYRP+ D++ E+ V+ L + + PN++ GPPG GKT+TIL
Sbjct: 32 NKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAA 91
Query: 318 ARALLGVS-FKDAVLELNASNDRGIDVVRNKIKMFAQQKVT------LPPGRHKIVILDE 476
AR L G F+ VLELNAS++RGI VVR K+K FAQ V+ P KIVILDE
Sbjct: 92 ARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDE 151
Query: 477 ADSMTDGAQQALRTHHGAVFQYNSFCI 557
ADSMT AQ ALR + FC+
Sbjct: 152 ADSMTSAAQAALRRTMEKESKTTRFCL 178
>UniRef50_A7ATE5 Cluster: Replication factor C3 protein, putative;
n=1; Babesia bovis|Rep: Replication factor C3 protein,
putative - Babesia bovis
Length = 348
Score = 120 bits (290), Expect = 2e-26
Identities = 59/130 (45%), Positives = 85/130 (65%), Gaps = 10/130 (7%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG 335
+PW+EKYRP++F DI+ ++D +S L FA+ G P+++ GPPG GKT+TI+ ++R L G
Sbjct: 7 VPWVEKYRPESFSDIISHDDILSTLMNFAEKGQLPHLLFHGPPGTGKTSTIMAVSRYLYG 66
Query: 336 VSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPG----------RHKIVILDEADS 485
V+ELNAS++RGI+ VR +IK FA+ T G K++ILDEAD
Sbjct: 67 SHRHSYVMELNASDERGIETVREQIKTFAETSNTFSSGIVGSDSGPRTNLKLIILDEADQ 126
Query: 486 MTDGAQQALR 515
MT+ AQ +LR
Sbjct: 127 MTNAAQNSLR 136
>UniRef50_Q01F45 Cluster: Rfc5 replication factor C subunit 5
(36kDa), probable; n=2; Ostreococcus|Rep: Rfc5
replication factor C subunit 5 (36kDa), probable -
Ostreococcus tauri
Length = 341
Score = 120 bits (288), Expect = 3e-26
Identities = 62/149 (41%), Positives = 88/149 (59%)
Frame = +3
Query: 111 PEKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGV 290
PEK + S+ K +LPW EKYRP ++V +E + + FA G P+++ GPPG
Sbjct: 2 PEKVSAEESTEK--HLPWTEKYRPLNLSEVVAHETIIDVIRKFAANGRLPHLLFHGPPGT 59
Query: 291 GKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 470
GKT+T+L L R L + + VLELNAS+ RGI++VR++I+ FA K+VI+
Sbjct: 60 GKTSTVLALTRELYESNHSNMVLELNASDSRGINIVRDEIQSFASTARPF-SSAFKLVIM 118
Query: 471 DEADSMTDGAQQALRTHHGAVFQYNSFCI 557
DE DS+T AQ ALR Q+ FC+
Sbjct: 119 DECDSLTKDAQFALRRIMEKYAQHTRFCL 147
>UniRef50_UPI0000498FA9 Cluster: activator 1 subunit; n=1; Entamoeba
histolytica HM-1:IMSS|Rep: activator 1 subunit -
Entamoeba histolytica HM-1:IMSS
Length = 329
Score = 119 bits (287), Expect = 4e-26
Identities = 62/134 (46%), Positives = 84/134 (62%), Gaps = 2/134 (1%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS 341
W EKYRP+T DD+ G E+ + L +G PN++ GPPG GKTT+IL +A L
Sbjct: 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLNSG-LPNLLFFGPPGSGKTTSILAVAHELFQGY 65
Query: 342 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTDGAQQALR 515
FK+ VLELNASN RGI++VR +K +A Q VT G +K++ILDE+D++T AQ ALR
Sbjct: 66 FKERVLELNASNQRGIEMVRTTLKNYAMQDVTHYDGTPDYKLIILDESDALTPDAQTALR 125
Query: 516 THHGAVFQYNSFCI 557
+ FC+
Sbjct: 126 RMMEDFTKNTRFCL 139
>UniRef50_P34429 Cluster: Putative replication factor C subunit 5;
n=2; Caenorhabditis|Rep: Putative replication factor C
subunit 5 - Caenorhabditis elegans
Length = 368
Score = 119 bits (286), Expect = 6e-26
Identities = 65/138 (47%), Positives = 85/138 (61%), Gaps = 9/138 (6%)
Frame = +3
Query: 129 KPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTI 308
K +++ ++NLPW+EKYRP D++V +E V L F + P+++ GPPG GKTTT+
Sbjct: 20 KMTTTTASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTV 79
Query: 309 LCLARALLG-VSFKDAVLELNASNDRGIDVVRNKIKMFAQQK------VTLPPGR--HKI 461
L AR + VLELNAS++RGIDVVRN I FAQ K + G K+
Sbjct: 80 LAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKL 139
Query: 462 VILDEADSMTDGAQQALR 515
VILDEAD+MT AQ ALR
Sbjct: 140 VILDEADAMTKDAQNALR 157
>UniRef50_Q8PVY4 Cluster: Replication factor C small subunit; n=13;
cellular organisms|Rep: Replication factor C small
subunit - Methanosarcina mazei (Methanosarcina frisia)
Length = 338
Score = 118 bits (285), Expect = 8e-26
Identities = 59/121 (48%), Positives = 82/121 (67%), Gaps = 3/121 (2%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS 341
WIEKYRP + + G E+T+ RL + T N P+++ +GPPGVGKT + + +AR + G
Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 342 -FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPG--RHKIVILDEADSMTDGAQQAL 512
+++ ELNAS++RGID+VRNKIK FA+ T P G KI+ LDEAD++T AQ AL
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAK---TAPMGGAPFKIIFLDEADALTSDAQSAL 131
Query: 513 R 515
R
Sbjct: 132 R 132
>UniRef50_Q5UZE5 Cluster: Replication factor C small subunit; n=5;
Halobacteriaceae|Rep: Replication factor C small subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 325
Score = 118 bits (284), Expect = 1e-25
Identities = 56/118 (47%), Positives = 81/118 (68%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS 341
WIEKYRPQT DD++G+E+ V RL + + +++ +GP G GKTT +AR L G
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 342 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 515
+++ LELNAS++RGIDVVR++IK FA + + ++I+ LDEAD++T AQ ALR
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADALTSDAQSALR 131
>UniRef50_A2DS36 Cluster: ATPase, AAA family protein; n=1;
Trichomonas vaginalis G3|Rep: ATPase, AAA family protein
- Trichomonas vaginalis G3
Length = 325
Score = 117 bits (282), Expect = 2e-25
Identities = 57/120 (47%), Positives = 77/120 (64%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG 335
LPW+EKYRP DD+V +E +S + F P++ GPPG GKTTT + ++ L G
Sbjct: 7 LPWVEKYRPSKLDDVVSHEACISTIKKFIDKNCLPHLCFHGPPGTGKTTTAIAISHQLYG 66
Query: 336 VSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 515
+VLELNAS++RGID VR +IK FA + P + K++ILDE+D+MT AQ ALR
Sbjct: 67 NDTSMSVLELNASDERGIDTVRMRIKDFASSRSLFGP-KIKLIILDESDAMTGAAQAALR 125
>UniRef50_Q5UP47 Cluster: Putative replication factor C small
subunit L499; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L499 -
Mimivirus
Length = 344
Score = 117 bits (282), Expect = 2e-25
Identities = 62/125 (49%), Positives = 77/125 (61%), Gaps = 5/125 (4%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG 335
LPW+EKYRPQ D I+ N D + L F ++ P+++ GP G GKT+TI C AR + G
Sbjct: 17 LPWVEKYRPQEIDHIISNRDIILSLKKFIESRTLPHLLFFGPSGSGKTSTIKCCAREIYG 76
Query: 336 VSFKDAVLELNASNDRGIDVVRNKIKMFAQQK--VTLPPGRH---KIVILDEADSMTDGA 500
+LELNASN+RGI+ VR KIK F K + LP G K+VILDE DSMT A
Sbjct: 77 KYINYMILELNASNERGIETVRTKIKNFVSSKSSIFLPMGVRDIFKLVILDEIDSMTVEA 136
Query: 501 QQALR 515
Q LR
Sbjct: 137 QGMLR 141
>UniRef50_P40348 Cluster: Replication factor C subunit 2; n=7;
Saccharomycetales|Rep: Replication factor C subunit 2 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 353
Score = 117 bits (282), Expect = 2e-25
Identities = 62/143 (43%), Positives = 84/143 (58%), Gaps = 10/143 (6%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGV 338
PW+EKYRP+ D++ + V+ L K+ N P+++ GPPG GKT+TIL L + L G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 339 S-FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR---------HKIVILDEADSM 488
K +LELNAS++RGI +VR K+K FA+ V+ P +KI+ILDEADSM
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 489 TDGAQQALRTHHGAVFQYNSFCI 557
T AQ ALR FC+
Sbjct: 146 TADAQSALRRTMETYSGVTRFCL 168
>UniRef50_Q9XI09 Cluster: F8K7.11 protein; n=11; Eukaryota|Rep:
F8K7.11 protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 319
Score = 116 bits (280), Expect = 3e-25
Identities = 63/127 (49%), Positives = 80/127 (62%), Gaps = 8/127 (6%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGV 338
PW+EKYRP+ D+ E+ V L +T + P+++ GPPG GKTTT L +A L G
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 339 S-FKDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPPGRHKIVILDEADSMTD 494
+K VLELNAS+DRGI+VVR KIK FA ++ P KI+ILDEADSMT+
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129
Query: 495 GAQQALR 515
AQ ALR
Sbjct: 130 DAQNALR 136
>UniRef50_Q86EA0 Cluster: Clone ZZD636 mRNA sequence; n=2;
Bilateria|Rep: Clone ZZD636 mRNA sequence - Schistosoma
japonicum (Blood fluke)
Length = 364
Score = 116 bits (278), Expect = 5e-25
Identities = 64/151 (42%), Positives = 89/151 (58%), Gaps = 15/151 (9%)
Frame = +3
Query: 153 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332
++PW+EKYRP+T D++ + VS L + PN++ GPPG GKT+ IL LAR L
Sbjct: 24 HIPWVEKYRPKTIDEVAYQTEVVSVLRRCIGGSDLPNLLFYGPPGTGKTSLILALARQLF 83
Query: 333 GVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVT---------------LPPGRHKIVI 467
G + + VLELNAS++RGI V+R K+K FA V+ +PP +K++I
Sbjct: 84 GPLYSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPP--YKLII 141
Query: 468 LDEADSMTDGAQQALRTHHGAVFQYNSFCIS 560
LDEADSMT AQ ALR + FC++
Sbjct: 142 LDEADSMTAPAQAALRRTMETEMRTTRFCLT 172
>UniRef50_Q5CVS5 Cluster: Replication factor C like AAA ATpase; n=2;
Cryptosporidium|Rep: Replication factor C like AAA
ATpase - Cryptosporidium parvum Iowa II
Length = 335
Score = 115 bits (276), Expect = 9e-25
Identities = 68/138 (49%), Positives = 90/138 (65%), Gaps = 11/138 (7%)
Frame = +3
Query: 135 SSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILC 314
SS+ S+NL W+EKYRP DI ++D VS L+ K GN P+++ GPPG GKT+ +L
Sbjct: 1 SSTMSSNL-WVEKYRPGNVLDISHHKDVVSMLSHVLKNGNMPHLLFHGPPGTGKTSAVLA 59
Query: 315 LARALLGVS-FKDAVLELNASNDRGIDVVRNKIKMFAQQKV----------TLPPGRHKI 461
L+R L G + +K+ +LELNAS++RGI VVR+KIK + +Q V L P KI
Sbjct: 60 LSRELFGPNEYKNRILELNASDERGISVVRDKIKSWTRQVVQCNKTHEITGNLLPS-WKI 118
Query: 462 VILDEADSMTDGAQQALR 515
VILDEA+ MT AQ ALR
Sbjct: 119 VILDEAEMMTADAQSALR 136
>UniRef50_Q8SQM0 Cluster: REPLICATION FACTOR C (ACTIVATOR 1) 37kDa
SUBUNIT; n=2; Microsporidia|Rep: REPLICATION FACTOR C
(ACTIVATOR 1) 37kDa SUBUNIT - Encephalitozoon cuniculi
Length = 309
Score = 115 bits (276), Expect = 9e-25
Identities = 60/117 (51%), Positives = 80/117 (68%)
Frame = +3
Query: 165 IEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSF 344
+ KY+P DIVGNE T+ +++ ++ + P+++ GPPG GKTT LAR LLG
Sbjct: 5 VNKYQPSEIQDIVGNEATMELVSLMIESRDMPHLLFTGPPGTGKTTCAKILARRLLG--N 62
Query: 345 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 515
K+ +LELNAS++RGID VR IK FAQ++V KI+ILDEADSMT AQQA+R
Sbjct: 63 KEGLLELNASDERGIDTVRTTIKSFAQRRV--KDCEFKIIILDEADSMTTTAQQAMR 117
>UniRef50_Q9GR07 Cluster: Replication factor C subunit 2; n=6;
Plasmodium|Rep: Replication factor C subunit 2 -
Plasmodium falciparum
Length = 330
Score = 114 bits (274), Expect = 2e-24
Identities = 64/133 (48%), Positives = 82/133 (61%), Gaps = 12/133 (9%)
Frame = +3
Query: 153 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332
N+PW+EKYRP+ DDIV + V L +T N P++I GPPG GKT+ I LA L
Sbjct: 3 NIPWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELF 62
Query: 333 G-VSFKDAVLELNASNDRGIDVVRNKIKMF-----------AQQKVTLPPGRHKIVILDE 476
G + + VLELNAS+DRGI+VVR KIK + ++ K LP K+V+LDE
Sbjct: 63 GKENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLP--SWKLVVLDE 120
Query: 477 ADSMTDGAQQALR 515
AD MT+ AQ ALR
Sbjct: 121 ADMMTEDAQSALR 133
>UniRef50_UPI0000E4A8C8 Cluster: PREDICTED: similar to replication
factor C subunit RFC5; n=2; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to replication factor
C subunit RFC5 - Strongylocentrotus purpuratus
Length = 292
Score = 113 bits (272), Expect = 3e-24
Identities = 56/122 (45%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
Frame = +3
Query: 165 IEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG-VS 341
+EKYRP + DD++ + + ++ + F K P+++ GPPG GKT+TIL +A+ L
Sbjct: 4 VEKYRPNSLDDLISHTEIINTIQKFIKQDRLPHLLFYGPPGTGKTSTILAVAKQLYAPKE 63
Query: 342 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRTH 521
F VLELNAS+DRGI +VR I FA + G K+VILDEAD+MT+ AQ ALR
Sbjct: 64 FNSMVLELNASDDRGIGIVRGSILNFASTRTIFKSG-FKLVILDEADAMTNDAQNALRRE 122
Query: 522 HG 527
+G
Sbjct: 123 NG 124
>UniRef50_Q0UV64 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 411
Score = 112 bits (270), Expect = 5e-24
Identities = 65/170 (38%), Positives = 97/170 (57%), Gaps = 28/170 (16%)
Frame = +3
Query: 132 PSSSKSTNL--PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTT 305
P+S + +N PW+EKYRP+T ++ ++T+ L+ ++ N P+++ GPPG GKT+T
Sbjct: 23 PTSKQESNRLQPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTST 82
Query: 306 ILCLARALLGVS-FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRH--------- 455
IL LA+ L G K VLELNAS++RGI +VR K+K FA+Q++++ P +
Sbjct: 83 ILALAKQLYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGG 142
Query: 456 ----------------KIVILDEADSMTDGAQQALRTHHGAVFQYNSFCI 557
KI++LDEADSMT AQ ALR + FC+
Sbjct: 143 EAKMVRYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCL 192
>UniRef50_A4IBL6 Cluster: Replication factor C, subunit 3, putative;
n=6; Trypanosomatidae|Rep: Replication factor C, subunit
3, putative - Leishmania infantum
Length = 364
Score = 112 bits (269), Expect = 7e-24
Identities = 65/162 (40%), Positives = 91/162 (56%), Gaps = 16/162 (9%)
Frame = +3
Query: 120 KQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKT 299
+Q + + + +++LPW+EKYRP T + +V +ED +S L +GN P++++ GPPG GKT
Sbjct: 5 RQGEEAKAAASHLPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKT 64
Query: 300 TTILCLARALLGVS-FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTL------------ 440
TTI A L G + VLE+NAS+DRGIDVVR + + FA
Sbjct: 65 TTIKACAYYLYGKDRVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGSGSSTGGG 124
Query: 441 ---PPGRHKIVILDEADSMTDGAQQALRTHHGAVFQYNSFCI 557
P + K+VILDEAD M+ AQ ALR + FCI
Sbjct: 125 SGGPAAKFKLVILDEADQMSHDAQAALRRVIEKYTRNVRFCI 166
>UniRef50_Q977Z9 Cluster: Replication factor C small subunit; n=4;
Thermoplasmatales|Rep: Replication factor C small
subunit - Thermoplasma volcanium
Length = 318
Score = 111 bits (267), Expect = 1e-23
Identities = 54/118 (45%), Positives = 78/118 (66%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS 341
W EKYRP++ +I G ++ + +L F + P+++ AG G GKT+T + LA L G S
Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGES 64
Query: 342 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 515
+K+ +E+NASN+ GIDV+RNKIK A+ + + P G KI+ LDEAD +T AQ ALR
Sbjct: 65 WKENFIEMNASNENGIDVIRNKIKDIARIRPSNPLG-FKILFLDEADQLTAEAQAALR 121
Score = 32.7 bits (71), Expect = 6.5
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +1
Query: 517 RTMELYSSTTRFALAANNSEK 579
RTME+YS TTRF A N S K
Sbjct: 122 RTMEMYSETTRFVFACNYSSK 142
>UniRef50_A0RYC0 Cluster: Replication factor C small subunit; n=1;
Cenarchaeum symbiosum|Rep: Replication factor C small
subunit - Cenarchaeum symbiosum
Length = 311
Score = 111 bits (266), Expect = 2e-23
Identities = 55/119 (46%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGV 338
W+EKYRP+ D+V ++ + + A+ G P+++ +G GVGKTTT LC+AR +LG
Sbjct: 2 WVEKYRPKKLADVVDQKEIIGSIEALLKNAGEMPHLLFSGSAGVGKTTTALCIARQVLGP 61
Query: 339 SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 515
+D +LELNAS++RGI +VR+K+K F+ KI+ILDEAD MT AQ ALR
Sbjct: 62 HIQDNLLELNASDERGIGMVRDKVKRFS-NFAAFEEIPFKIIILDEADEMTADAQTALR 119
>UniRef50_Q4Q732 Cluster: Replication factor C, subunit 2, putative;
n=6; Trypanosomatidae|Rep: Replication factor C, subunit
2, putative - Leishmania major
Length = 354
Score = 110 bits (264), Expect = 3e-23
Identities = 67/167 (40%), Positives = 90/167 (53%), Gaps = 18/167 (10%)
Frame = +3
Query: 111 PEKKQVKPSSSKSTN---LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTG-NAPNIIIAG 278
P +K+ K + T PW+EKYRP+T ++ ++ V L K G N P+ + G
Sbjct: 7 PAQKRAKTEGASDTAGAAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHG 66
Query: 279 PPGVGKTTTILCLARALLGVSF-KDAVLELNASNDRGIDVVRNKIKMFAQ-------QKV 434
PPG GKTT+IL +A L G + + V ELNAS+DRGI VVR K+K+FAQ V
Sbjct: 67 PPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGISVVREKVKIFAQGAVSSSGSSV 126
Query: 435 TLPPGR------HKIVILDEADSMTDGAQQALRTHHGAVFQYNSFCI 557
T G+ K++ILDEAD++ AQ ALR FCI
Sbjct: 127 TQSDGKVYPVPPFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCI 173
>UniRef50_Q4WW89 Cluster: Replication factor C subunit; n=1;
Aspergillus fumigatus|Rep: Replication factor C subunit
- Aspergillus fumigatus (Sartorya fumigata)
Length = 389
Score = 108 bits (260), Expect = 8e-23
Identities = 68/151 (45%), Positives = 86/151 (56%), Gaps = 10/151 (6%)
Frame = +3
Query: 135 SSSKSTN--LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTI 308
SS+ T+ LPW +KYRP T +VG ++T+S L F P+++ GPPG GKT+TI
Sbjct: 10 SSTAETDDVLPWQDKYRPATLKQVVGQDETLSVLKSFMIHRKFPHLLFHGPPGTGKTSTI 69
Query: 309 LCLARALLG-VSFKDAVLELNASNDRGIDVVRNKIKMFAQQ----KVTL---PPGRHKIV 464
L LAR L G VLELNAS+DR + V+ +IK FA KV L P K+V
Sbjct: 70 LALARQLYGDADMSQMVLELNASDDRSVHDVQIRIKAFASTRPIFKVPLRESPYNMFKLV 129
Query: 465 ILDEADSMTDGAQQALRTHHGAVFQYNSFCI 557
ILDEAD+M AQ ALR + FCI
Sbjct: 130 ILDEADTMDHTAQMALRRIIEDYAAFTRFCI 160
>UniRef50_A7DR59 Cluster: Replication factor C; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Replication factor C
- Candidatus Nitrosopumilus maritimus SCM1
Length = 316
Score = 107 bits (257), Expect = 2e-22
Identities = 54/119 (45%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTG-NAPNIIIAGPPGVGKTTTILCLARALLGV 338
W+EKYRP ++V + + L K + P+++ +G GVGKTTT LC++R +LG
Sbjct: 7 WVEKYRPMKLSEVVNQTEIIGSLEALIKDPTDMPHLLFSGSAGVGKTTTALCISRQILGD 66
Query: 339 SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 515
KD LELNAS++RGI +VR K+K F++ + KI+ILDEAD MT AQ ALR
Sbjct: 67 YAKDYTLELNASDERGIGMVREKVKKFSRY-AGMADVPFKIIILDEADEMTSDAQTALR 124
>UniRef50_Q5UQ72 Cluster: Putative replication factor C small
subunit L510; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L510 -
Mimivirus
Length = 363
Score = 107 bits (256), Expect = 2e-22
Identities = 56/128 (43%), Positives = 80/128 (62%), Gaps = 7/128 (5%)
Frame = +3
Query: 153 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332
++PWIEKYRP+ +DI +++ + K G + + GPPG GKT+ IL + R +
Sbjct: 6 SVPWIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGREIF 65
Query: 333 GVSFKDAVLELNASNDRGIDVVRNKIKMFAQQ---KVTLPPG----RHKIVILDEADSMT 491
F++ V+E NAS+DRGI+ VR KI A++ ++ L G +KI+ILDEADSMT
Sbjct: 66 KEHFQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKIIILDEADSMT 125
Query: 492 DGAQQALR 515
D AQ ALR
Sbjct: 126 DEAQDALR 133
>UniRef50_Q5CUE4 Cluster: Replication factor RFC3 AAA+ ATpase; n=2;
Cryptosporidium|Rep: Replication factor RFC3 AAA+ ATpase
- Cryptosporidium parvum Iowa II
Length = 383
Score = 93.1 bits (221), Expect(2) = 4e-22
Identities = 40/98 (40%), Positives = 63/98 (64%)
Frame = +3
Query: 144 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAR 323
+ LPW+EKYRP D++ ++D ++ + F +G P+++ GPPG GKT+TI +++
Sbjct: 8 EEAQLPWVEKYRPSGLQDLLSHKDIINTIEKFISSGQLPHLLFHGPPGTGKTSTIHAISK 67
Query: 324 ALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVT 437
+ VLELNAS+DRGI+VVR+ IK F++ T
Sbjct: 68 CIYKDRKYQMVLELNASDDRGINVVRDAIKSFSESAST 105
Score = 34.3 bits (75), Expect(2) = 4e-22
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 456 KIVILDEADSMTDGAQQALRTHHGAVFQYNSFCI 557
K++ILDEAD MT AQ ALR ++ FCI
Sbjct: 141 KLIILDEADMMTSTAQMALRRIMERYSEHVRFCI 174
>UniRef50_Q4UIH2 Cluster: Replication factor C subunit (RPC2
homologue) , putative; n=3; Piroplasmida|Rep:
Replication factor C subunit (RPC2 homologue) , putative
- Theileria annulata
Length = 336
Score = 106 bits (254), Expect = 4e-22
Identities = 56/131 (42%), Positives = 83/131 (63%), Gaps = 10/131 (7%)
Frame = +3
Query: 153 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332
++PW+EKYRP+ D++ VS + +T N P++I GPPG GKT+ L +AR +
Sbjct: 6 DVPWVEKYRPKKISDVIFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQIY 65
Query: 333 GV-SFKDAVLELNASNDRGIDVVRNKIKMF-----AQQKVTLPPGR----HKIVILDEAD 482
G+ ++ VLELNAS++RGIDVVR++IK + + +V R +K++ILDEAD
Sbjct: 66 GLEGMRERVLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMPNYKMIILDEAD 125
Query: 483 SMTDGAQQALR 515
+T AQ ALR
Sbjct: 126 MITADAQAALR 136
>UniRef50_Q8QKY2 Cluster: EsV-1-87; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-87 - Ectocarpus siliculosus virus 1
Length = 324
Score = 103 bits (247), Expect = 3e-21
Identities = 57/125 (45%), Positives = 82/125 (65%), Gaps = 3/125 (2%)
Frame = +3
Query: 150 TNLPWIEKYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARA 326
T PW+EKYRP F ++VGN+ ++S L+ + AK + P+++I GP G GKT + L
Sbjct: 2 TAQPWVEKYRPLCFSEVVGNKKSISLLSNLAAKRVSIPHLLICGPSGCGKTVCVDILCNT 61
Query: 327 LLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKV-TLP-PGRHKIVILDEADSMTDGA 500
++ + +L L++ ++RGID VR +K FA+ +V T P P KIV+LDEADSMT GA
Sbjct: 62 MIPENRGARMLRLSSFDERGIDNVRTTVKNFARGRVGTEPTPTIAKIVVLDEADSMTPGA 121
Query: 501 QQALR 515
QALR
Sbjct: 122 FQALR 126
>UniRef50_Q7R657 Cluster: GLP_574_161256_160291; n=1; Giardia
lamblia ATCC 50803|Rep: GLP_574_161256_160291 - Giardia
lamblia ATCC 50803
Length = 321
Score = 102 bits (244), Expect = 7e-21
Identities = 53/139 (38%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG 335
+PW+EKYRP T + +V +E ++ + + G P++I G PG GKTT I L L G
Sbjct: 2 IPWVEKYRPSTTEGVVSHELIIAAIRALIREGRLPHMIFYGKPGTGKTTLIKALMNELFG 61
Query: 336 VSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTL-----PPGRHKIVILDEADSMTDGA 500
+ VLELNAS+D G+DV+R +K F L + KIVI+DE D M+ A
Sbjct: 62 DAVSTHVLELNASDDSGVDVIRQTVKGFVTSGSVLSQQSSSATKFKIVIMDECDHMSSVA 121
Query: 501 QQALRTHHGAVFQYNSFCI 557
Q +LR ++ FC+
Sbjct: 122 QASLRRLMETSIKHARFCL 140
>UniRef50_Q5UQ47 Cluster: Putative replication factor C small
subunit R395; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit R395 -
Mimivirus
Length = 319
Score = 99.5 bits (237), Expect = 5e-20
Identities = 46/119 (38%), Positives = 71/119 (59%)
Frame = +3
Query: 147 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARA 326
+ ++PWIEKYRP DD++ +++ ++ +F + ++II G PGVGKT+T+ C+A+
Sbjct: 2 TNSIPWIEKYRPVNIDDVIIDDNISKQINIFLQDRENVHLIITGSPGVGKTSTVRCIAKE 61
Query: 327 LLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQ 503
LLG LE+NA+ DRG+ + I F K + KI++LDEAD MT Q
Sbjct: 62 LLGEDMSQGYLEINAAEDRGVRSISTIIPPFC--KKVFAANKSKIILLDEADIMTSKCQ 118
>UniRef50_P53016 Cluster: Replication factor C subunit 4; n=2;
Caenorhabditis|Rep: Replication factor C subunit 4 -
Caenorhabditis elegans
Length = 334
Score = 97.9 bits (233), Expect = 2e-19
Identities = 54/125 (43%), Positives = 76/125 (60%), Gaps = 5/125 (4%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG 335
L W EKYRP+T DDI ++ V+ L + + P+++ GPPG GKT+ L R L
Sbjct: 15 LTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFP 74
Query: 336 VS-FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPG----RHKIVILDEADSMTDGA 500
+ F D VL+LNAS++RGI VVR KI+ F++ + + KI+ILDE D+MT A
Sbjct: 75 KNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIIILDEVDAMTREA 134
Query: 501 QQALR 515
Q A+R
Sbjct: 135 QAAMR 139
>UniRef50_A6R5J4 Cluster: Activator 1 subunit 3; n=1; Ajellomyces
capsulatus NAm1|Rep: Activator 1 subunit 3 - Ajellomyces
capsulatus NAm1
Length = 366
Score = 96.3 bits (229), Expect = 5e-19
Identities = 57/133 (42%), Positives = 76/133 (57%), Gaps = 2/133 (1%)
Frame = +3
Query: 165 IEKYRPQTFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGV- 338
+EKYRP T +D V N + +F + P++++ GPPG GKT+TIL LAR + GV
Sbjct: 74 VEKYRPNTLEDAVPNAPNIDWTNPLFVQ--RLPHLLLYGPPGTGKTSTILALARRIYGVK 131
Query: 339 SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALRT 518
+ + VLELNAS+DRGIDV ++ G K++ILDEAD+MT AQ ALR
Sbjct: 132 NMRQMVLELNASDDRGIDVFVIHPFRYSLSNSESTLGAFKLIILDEADAMTATAQMALRR 191
Query: 519 HHGAVFQYNSFCI 557
FCI
Sbjct: 192 IMEKYTANTRFCI 204
>UniRef50_Q8TZC4 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Mkn RFC intein]; n=1; Methanopyrus kandleri|Rep:
Replication factor C small subunit (RFC small subunit)
(Clamp loader small subunit) [Contains: Mkn RFC intein]
- Methanopyrus kandleri
Length = 635
Score = 95.5 bits (227), Expect = 8e-19
Identities = 41/73 (56%), Positives = 50/73 (68%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG 335
+PW+EKYRP+ DDIV E V RL + G+ PN++ AGPPG GKTT LCLAR L G
Sbjct: 11 IPWVEKYRPKRLDDIVDQEHVVERLKAYVNRGDMPNLLFAGPPGTGKTTAALCLARELFG 70
Query: 336 VSFKDAVLELNAS 374
++D LELNAS
Sbjct: 71 EHWRDNFLELNAS 83
Score = 53.2 bits (122), Expect = 4e-06
Identities = 26/51 (50%), Positives = 38/51 (74%)
Frame = +3
Query: 363 LNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 515
L+ S++RGIDV+R K+K FA+ + + R KI+ LDEAD++T +QQALR
Sbjct: 385 LHNSDERGIDVIRTKVKNFARTR-PMGGARFKIIFLDEADNLTRDSQQALR 434
>UniRef50_Q8SSI2 Cluster: DNA REPLICATION FACTOR C (ACTIVATOR 1)
SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA
REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT -
Encephalitozoon cuniculi
Length = 305
Score = 94.7 bits (225), Expect = 1e-18
Identities = 55/116 (47%), Positives = 71/116 (61%)
Frame = +3
Query: 168 EKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFK 347
EKYRP + ++VGN + VS L + G PN++ GPPG GKTT+I +A L +
Sbjct: 7 EKYRPGSLLEVVGNREVVSSLQSISSAGRIPNMLFYGPPGTGKTTSIRAIANNLP----R 62
Query: 348 DAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 515
+VLELNAS++RGI VR IK FA + K+VILDEAD M+ AQ ALR
Sbjct: 63 TSVLELNASDERGIATVRETIKEFA----STYSKTMKLVILDEADMMSRDAQNALR 114
>UniRef50_A6R3U6 Cluster: Activator 1 37 kDa subunit; n=1;
Ajellomyces capsulatus NAm1|Rep: Activator 1 37 kDa
subunit - Ajellomyces capsulatus NAm1
Length = 231
Score = 92.7 bits (220), Expect = 6e-18
Identities = 52/115 (45%), Positives = 72/115 (62%), Gaps = 13/115 (11%)
Frame = +3
Query: 258 PNIIIAGPPGVGKTTTILCLARALLGVS-FKDAVLELNASNDRGIDVVRNKIKMFAQQKV 434
P+++ GPPG GKT+TIL LA++L G ++ +LELNAS++RGI +VR KIK FA+ ++
Sbjct: 5 PHMLFYGPPGTGKTSTILALAKSLYGPQLYRSRILELNASDERGISIVREKIKDFARMQL 64
Query: 435 TLPP------------GRHKIVILDEADSMTDGAQQALRTHHGAVFQYNSFCISS 563
+ PP KI+ILDEADSMT AQ ALR + FC+S+
Sbjct: 65 SHPPLSDSAYREKYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITRFCLSA 119
>UniRef50_Q8QN66 Cluster: EsV-1-224; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-224 - Ectocarpus siliculosus virus 1
Length = 324
Score = 92.3 bits (219), Expect = 8e-18
Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG-V 338
W EK+RP D+ GN+ + L F PN+I+ GPPG GKT++I+ +A++ G
Sbjct: 4 WTEKHRPTRLQDVSGNDHVIRALQSFTSMETTPNMILHGPPGSGKTSSIISMAKSFFGRT 63
Query: 339 SFKDAVLELNASNDRGIDVVRNKIKMFAQ-QKVT-LPPGRHKIVILDEADSMTDGAQQAL 512
+ LELNA + R I +R++I F + VT K+VILDEAD +T AQ+AL
Sbjct: 64 NISIMTLELNAGDSRSIGTMRDQIHFFTRCSSVTDRSTNALKLVILDEADGLTSCAQRAL 123
Query: 513 R 515
R
Sbjct: 124 R 124
>UniRef50_Q7QUZ0 Cluster: GLP_61_35037_36092; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_61_35037_36092 - Giardia lamblia
ATCC 50803
Length = 351
Score = 87.8 bits (208), Expect = 2e-16
Identities = 52/143 (36%), Positives = 74/143 (51%), Gaps = 10/143 (6%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGV 338
PW EK+RP D I+ + V ++GN P++++ GP G GKTT I + G
Sbjct: 4 PWTEKHRPLLLDRIMHQDHAVRAAKRCIESGNMPHMLLYGPAGTGKTTLIHAMMHEFFGP 63
Query: 339 SF-KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHK---------IVILDEADSM 488
F + V E NAS DRGI +VR +IK A+ + + P K ++ILDEAD++
Sbjct: 64 RFWRARVSEFNASTDRGIKIVRERIKSIARTVIAVAPDDVKAVYPCPDFQVIILDEADAL 123
Query: 489 TDGAQQALRTHHGAVFQYNSFCI 557
T +Q ALR + FCI
Sbjct: 124 TRESQAALRRIIEDFSETTRFCI 146
>UniRef50_UPI0001554DFB Cluster: PREDICTED: similar to olfactory
receptor Olr396, partial; n=1; Ornithorhynchus
anatinus|Rep: PREDICTED: similar to olfactory receptor
Olr396, partial - Ornithorhynchus anatinus
Length = 208
Score = 82.6 bits (195), Expect = 6e-15
Identities = 42/87 (48%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Frame = +3
Query: 177 RPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS-FKDA 353
RP+ D++ E+ V+ L + + PN++ GPPG GKT+TIL AR L G F+
Sbjct: 117 RPKRVDEVAYQEEVVAVLRRSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELFRQR 176
Query: 354 VLELNASNDRGIDVVRNKIKMFAQQKV 434
VLELNAS++RGI VVR K+K FAQ V
Sbjct: 177 VLELNASDERGIQVVREKVKTFAQLTV 203
>UniRef50_Q5GQL5 Cluster: Sliding clamp loader gp44; n=5; root|Rep:
Sliding clamp loader gp44 - Cyanophage phage S-PM2
Length = 315
Score = 82.6 bits (195), Expect = 6e-15
Identities = 48/133 (36%), Positives = 77/133 (57%), Gaps = 2/133 (1%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS 341
W+E+YRP++ DD + + F + G PN+++ G GVGKTT + +G S
Sbjct: 8 WVEQYRPKSVDDCILPTSIKNSFKAFVEQGEIPNLLLTGSAGVGKTTIAKAVCEQ-IGAS 66
Query: 342 FKDAVLELNASND-RGIDVVRNKIKMFAQQKVTLPPGR-HKIVILDEADSMTDGAQQALR 515
+ + +N S++ R +D VRN+++ FA V+L G HK+VI+DEAD+ T Q +LR
Sbjct: 67 Y----IVINGSDEGRFLDTVRNRVRQFA-TTVSLTSGAPHKVVIIDEADNTTHDVQLSLR 121
Query: 516 THHGAVFQYNSFC 554
T AV +++ C
Sbjct: 122 T---AVEEFHGNC 131
>UniRef50_Q9V2G3 Cluster: Replication factor C large subunit; n=4;
Thermococcaceae|Rep: Replication factor C large subunit
- Pyrococcus abyssi
Length = 479
Score = 81.8 bits (193), Expect = 1e-14
Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 6/117 (5%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPN---IIIAGPPGVGKTTTILCL 317
+PW+EKYRP+ +I+ ED +S++ + + GN P +++AGPPG GKTTT+ L
Sbjct: 4 VPWVEKYRPRRLSEIINQEDAISKVKAWIEAWLHGNPPKKKALLLAGPPGSGKTTTVYAL 63
Query: 318 ARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSM 488
AR + V+ELNAS++R D + ++ A + + R KI+ LDEAD++
Sbjct: 64 AR-----EYNFEVIELNASDERTYDKIARYVQ--AAYTMDILGKRRKIIFLDEADNI 113
>UniRef50_Q8SSG6 Cluster: DNA REPLICATION FACTOR (ACTIVATOR 1) 36
kDa SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA
REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBUNIT -
Encephalitozoon cuniculi
Length = 283
Score = 81.4 bits (192), Expect = 1e-14
Identities = 52/118 (44%), Positives = 69/118 (58%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS 341
W EKYRP++ D G E + L + G+ PN+++ GPPG GKTT LA
Sbjct: 3 WTEKYRPKSTDAFEGPEHLKNILRNSSGRGH-PNLLLYGPPGTGKTTFAHLLA------- 54
Query: 342 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 515
LELNAS++RGI V+R KIK++A TL G+ K VILDE +++T AQ LR
Sbjct: 55 --SQKLELNASDERGISVIREKIKVYAS---TL--GKDKTVILDECENLTSDAQHCLR 105
>UniRef50_A3ABV4 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 389
Score = 77.0 bits (181), Expect = 3e-13
Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGV 338
PW+EKYRPQ+ D+ + D V + P++++ GPPG GK L + +G
Sbjct: 39 PWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKHRQYWPLQGSCMG- 97
Query: 339 SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRH---KIVILDEADSMTDGAQQA 509
N+RGIDVVR +I+ FA + +L G K+V+LDEAD+MT AQ A
Sbjct: 98 -----------HNERGIDVVRQQIQDFASAR-SLSFGAKQSVKMVLLDEADAMTKDAQFA 145
Query: 510 LR 515
LR
Sbjct: 146 LR 147
>UniRef50_Q8SRT8 Cluster: DNA REPLICATION FACTOR C SUBUNIT; n=1;
Encephalitozoon cuniculi|Rep: DNA REPLICATION FACTOR C
SUBUNIT - Encephalitozoon cuniculi
Length = 568
Score = 74.9 bits (176), Expect = 1e-12
Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Frame = +3
Query: 114 EKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAK-TGNAPNIIIAGPPGV 290
EK + +++ W EKYRP D+IVGN+ V +L + + ++++G PG+
Sbjct: 97 EKAASRDECGSASSGVWSEKYRPSKRDEIVGNQGIVKQLEDYLQGRTKYKAVLLSGQPGI 156
Query: 291 GKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPG--RHKIV 464
GKTTT + ++ LG++ V+E NAS+ R + NK+K F + L PG + K++
Sbjct: 157 GKTTTAHVVCKS-LGLN----VIEFNASDVRSKLEISNKVKAFVSSQSILRPGSSKSKVL 211
Query: 465 ILDEADSMT 491
I+DE D M+
Sbjct: 212 IMDEVDGMS 220
>UniRef50_O57852 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Pho RFC intein]; n=8; Euryarchaeota|Rep: Replication
factor C small subunit (RFC small subunit) (Clamp loader
small subunit) [Contains: Pho RFC intein] - Pyrococcus
horikoshii
Length = 855
Score = 74.5 bits (175), Expect = 2e-12
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Frame = +3
Query: 270 IAG--PPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP 443
IAG P V TT L L+R L G +++ LELNAS++RGI+V+R K+K FA+ K +
Sbjct: 576 IAGNMPTVVHNTTAALALSRELFGENWRHNFLELNASDERGINVIREKVKEFARTK-PIG 634
Query: 444 PGRHKIVILDEADSMTDGAQQALR 515
KI+ LDEAD++T AQQALR
Sbjct: 635 GASFKIIFLDEADALTQDAQQALR 658
Score = 71.3 bits (167), Expect = 2e-11
Identities = 29/49 (59%), Positives = 36/49 (73%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTT 305
PW+EKYRPQ D+IVG E V RL + KTG+ P+++ AGPPGVGK T
Sbjct: 16 PWVEKYRPQRLDEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 64
>UniRef50_Q9V2G4 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) (PabRFC
small subunit) [Contains: Pab RFC-1 intein; Pab RFC-2
intein]; n=2; Euryarchaeota|Rep: Replication factor C
small subunit (RFC small subunit) (Clamp loader small
subunit) (PabRFC small subunit) [Contains: Pab RFC-1
intein; Pab RFC-2 intein] - Pyrococcus abyssi
Length = 1437
Score = 74.1 bits (174), Expect = 2e-12
Identities = 39/79 (49%), Positives = 53/79 (67%)
Frame = +3
Query: 279 PPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHK 458
P + TT L LAR L G +++ LELNAS++RGI+V+R K+K FA+ K + K
Sbjct: 555 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTK-PIGGASFK 613
Query: 459 IVILDEADSMTDGAQQALR 515
I+ LDEAD++T AQQALR
Sbjct: 614 IIFLDEADALTQDAQQALR 632
Score = 69.7 bits (163), Expect = 5e-11
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTT 305
PW+EKYRPQ ++IVG E V RL + KTG+ P+++ AGPPGVGK T
Sbjct: 16 PWVEKYRPQKLEEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 64
>UniRef50_Q6WI74 Cluster: Gp44; n=1; Vibrio phage KVP40|Rep: Gp44 -
Bacteriophage KVP40
Length = 318
Score = 72.5 bits (170), Expect = 7e-12
Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Frame = +3
Query: 141 SKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIII-AGPPGVGKTTTILCL 317
S + L W +KYRPQ+ D V E PN+++ + PG GKTT +
Sbjct: 5 SVANELLWEQKYRPQSIKDCVLPERVRKLFQKMVDDNQIPNMLLCSSSPGTGKTT----V 60
Query: 318 ARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG 497
ARA+L VL +NAS+ RGI +V+N + F V+ G K VILDEAD++T
Sbjct: 61 ARAVLA-DMGYEVLFVNASSSRGIGLVQNDLPAFCST-VSFS-GNPKAVILDEADNLTPD 117
Query: 498 AQQALRTHHGAVFQYN 545
AQ+ALR G + QY+
Sbjct: 118 AQKALR---GLIEQYS 130
>UniRef50_A0B6D7 Cluster: Replication factor C large subunit; n=1;
Methanosaeta thermophila PT|Rep: Replication factor C
large subunit - Methanosaeta thermophila (strain DSM
6194 / PT) (Methanothrixthermophila (strain DSM 6194 /
PT))
Length = 467
Score = 69.3 bits (162), Expect = 6e-11
Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 5/114 (4%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKT--GNAPNI---IIAGPPGVGKTTTILCLARA 326
W EKYRP+ D I+GN VS L +A P + I+ GPPGVGKT+ L LA
Sbjct: 4 WAEKYRPKNLDGILGNAKAVSELRAWAMAWEKGRPEVKCLILYGPPGVGKTSAALALASE 63
Query: 327 LLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSM 488
+ +ELNAS+ R +++++ I A Q T GR ++VILDEAD++
Sbjct: 64 M-----DWDYIELNASDQRTAEIIKS-IAGPASQVSTF-SGRRRLVILDEADNL 110
>UniRef50_Q2NH88 Cluster: Replication factor C large subunit; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: Replication
factor C large subunit - Methanosphaera stadtmanae
(strain DSM 3091)
Length = 534
Score = 68.9 bits (161), Expect = 8e-11
Identities = 37/116 (31%), Positives = 68/116 (58%), Gaps = 4/116 (3%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAK--TGNAPN--IIIAGPPGVGKTTTILCLAR 323
+ W+EKY P+ D++GN +++ V+A + P +++ GPPG+GKTT +A
Sbjct: 1 MKWVEKYAPKKLGDVLGNAKAKAQIEVWANKWSKGVPQKPLLLMGPPGIGKTT----IAH 56
Query: 324 ALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT 491
L+G + +E+NAS+ R D++++ I AQ + G +K++I+DE D ++
Sbjct: 57 -LVGKEYFSETIEVNASDKRSYDIIKSSIGEAAQTRSLFHSG-YKLLIMDEVDGIS 110
>UniRef50_A3CUW4 Cluster: Replication factor C; n=2;
Methanomicrobiales|Rep: Replication factor C -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 336
Score = 68.5 bits (160), Expect = 1e-10
Identities = 27/62 (43%), Positives = 42/62 (67%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS 341
W E YRP+ DDI+G ++ V L F+ +G+ P+++I+GP G GKT + CLA+ L G +
Sbjct: 3 WSEVYRPRRCDDIIGQDEVVRHLTAFSDSGSVPHMLISGPHGTGKTAAVECLAKRLYGEN 62
Query: 342 FK 347
+K
Sbjct: 63 WK 64
>UniRef50_A5UMF4 Cluster: Replication factor C large subunit; n=2;
Methanobacteriaceae|Rep: Replication factor C large
subunit - Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861)
Length = 492
Score = 68.5 bits (160), Expect = 1e-10
Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFA---KTGNAPN-IIIAGPPGVGKTTTILCLARAL 329
W +KYRP+T D++VGN + + + K GN +++ GPPG+GKTT +AR
Sbjct: 3 WTDKYRPKTLDEVVGNNKEKALIQKWVDNWKAGNPQKPLLLVGPPGIGKTTLAQAIAR-- 60
Query: 330 LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSM 488
F + +ELNAS+ R DV+++ I + K +L +K++ILDE D +
Sbjct: 61 ---EFSE-YIELNASDKRSQDVIKSTIGESSSSK-SLFGDDYKLLILDEVDGI 108
>UniRef50_Q64AI6 Cluster: Replication factor C subunit; n=1;
uncultured archaeon GZfos31B6|Rep: Replication factor C
subunit - uncultured archaeon GZfos31B6
Length = 416
Score = 68.1 bits (159), Expect = 1e-10
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS 341
W EKYRP TF+DIVG+E V+ L ++ N P++++ G GK + + LARAL G
Sbjct: 77 WTEKYRPHTFEDIVGHEHIVANLKHLVESNNLPHLVLYGAKNTGKMSAVFVLARALYGEQ 136
Query: 342 FKDAVLELNASN--DRG 386
+++ + +ASN DRG
Sbjct: 137 WENNLAIFDASNFFDRG 153
>UniRef50_Q0W3P4 Cluster: Replication factor C large subunit; n=1;
uncultured methanogenic archaeon RC-I|Rep: Replication
factor C large subunit - Uncultured methanogenic
archaeon RC-I
Length = 553
Score = 66.1 bits (154), Expect = 6e-10
Identities = 47/112 (41%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKT-GNAPN-IIIAGPPGVGKTTTILCLARALLG 335
W EKYRP + DIVGN+ V L +A+T G +I+ G PGVGKT+ L LA +G
Sbjct: 10 WTEKYRPVSLADIVGNDAAVKALRQWAETFGTGKKAVILYGGPGVGKTSAALALAHD-MG 68
Query: 336 VSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP-PGRHKIVILDEADSM 488
+ +ELNAS+ R D + N+I A T G ++VILDEAD++
Sbjct: 69 WDY----IELNASDVRTKDAI-NRIAGPAAMAGTFEGTGGRRLVILDEADNL 115
>UniRef50_Q2FQR4 Cluster: Replication factor C large subunit; n=2;
Methanomicrobiales|Rep: Replication factor C large
subunit - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 483
Score = 66.1 bits (154), Expect = 6e-10
Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAK--TGNAPNIIIAGPPGVGKTTTILCLARAL 329
+ W EKYRP+ +++VGN + + +++ +A T +P +I+ G PG+GKT++ LA
Sbjct: 1 MDWAEKYRPRHLNEMVGNREALHQMSEWATRWTVESPPLILYGKPGIGKTSSAWALAH-- 58
Query: 330 LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQ 506
V+ELNAS+ R V+ K+ + +L K++ILDEAD++ A +
Sbjct: 59 ---DMNWEVVELNASDQRTKAVI-EKVAGGSASTGSLTGAARKLIILDEADNLQGNADR 113
>UniRef50_Q58817 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Mja RFC-1 intein; Mja RFC-2 intein; Mja RFC- 3 intein];
n=1; Methanocaldococcus jannaschii|Rep: Replication
factor C small subunit (RFC small subunit) (Clamp loader
small subunit) [Contains: Mja RFC-1 intein; Mja RFC-2
intein; Mja RFC- 3 intein] - Methanococcus jannaschii
Length = 1847
Score = 65.7 bits (153), Expect = 8e-10
Identities = 25/49 (51%), Positives = 36/49 (73%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTT 305
PW+EKYRP+T DDIVG ++ V RL + + + P+++ +GPPGVGK T
Sbjct: 8 PWVEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKCLT 56
Score = 48.4 bits (110), Expect = 1e-04
Identities = 25/51 (49%), Positives = 36/51 (70%)
Frame = +3
Query: 363 LNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 515
L+ S++RGIDV+R K+K FA+ K + KI+ LDE+D++T AQ ALR
Sbjct: 1060 LHNSDERGIDVIRTKVKDFARTK-PIGDVPFKIIFLDESDALTADAQNALR 1109
Score = 34.7 bits (76), Expect = 1.6
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +3
Query: 279 PPGVGKTTTILCLARALLGVSFKDAVLELNAS 374
P + TT LCLAR L G +++D LELNAS
Sbjct: 596 PTILHNTTAALCLARDLFGENWRDNFLELNAS 627
>UniRef50_Q2FUA8 Cluster: Replication factor C subunit; n=1;
Methanospirillum hungatei JF-1|Rep: Replication factor C
subunit - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 331
Score = 65.3 bits (152), Expect = 1e-09
Identities = 30/72 (41%), Positives = 42/72 (58%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS 341
WIEKYRP TFD I+G E L A T N P+++++GPPG GK+ + R L G +
Sbjct: 3 WIEKYRPVTFDQILGQERVCEVLRRCAATKNLPHLVVSGPPGTGKSAAVEVTLRELYGDT 62
Query: 342 FKDAVLELNASN 377
++D V S+
Sbjct: 63 WQDNVTIFRTSD 74
>UniRef50_Q8Q084 Cluster: Replication factor C large subunit; n=4;
Methanosarcinaceae|Rep: Replication factor C large
subunit - Methanosarcina mazei (Methanosarcina frisia)
Length = 610
Score = 64.5 bits (150), Expect = 2e-09
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAK--TGNAPN---IIIAGPPGVGKTTTILCLA 320
+ W EKYRP+T D+VGN V L +A+ P +I+ GP G+GKT++ A
Sbjct: 10 IEWAEKYRPRTLGDVVGNRKAVQDLRKWAEEWQSGIPEKRAVILYGPAGIGKTSS----A 65
Query: 321 RALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSM 488
AL G + V+ELNAS+ R V+ KI A T G+ +++ILDEAD++
Sbjct: 66 HALAG-DMEWEVIELNASDQRTAGVI-EKIAGSAASMNTFFGGK-RLIILDEADNL 118
>UniRef50_Q58294 Cluster: Replication factor C large subunit; n=6;
Methanococcales|Rep: Replication factor C large subunit
- Methanococcus jannaschii
Length = 516
Score = 64.5 bits (150), Expect = 2e-09
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPN-IIIAGPPGVGKTTTILCLAR 323
L W+EKYRP++ D+ G+E +L + ++ G P I++ GPPG GKTT LA
Sbjct: 2 LSWVEKYRPKSLKDVAGHEKVKEKLKTWIESYLKGETPKPILLVGPPGCGKTTLAYALAN 61
Query: 324 ALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT 491
+ V+ELNAS+ R ++ + A G+ +++LDE D ++
Sbjct: 62 -----DYGFEVIELNASDKRNSSAIKKVVGHAATSSSIF--GKKFLIVLDEVDGIS 110
>UniRef50_Q98RV1 Cluster: Replication factor C 37 KD subunit; n=1;
Guillardia theta|Rep: Replication factor C 37 KD subunit
- Guillardia theta (Cryptomonas phi)
Length = 290
Score = 64.1 bits (149), Expect = 2e-09
Identities = 32/93 (34%), Positives = 55/93 (59%)
Frame = +3
Query: 237 FAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKM 416
F K + PN ++ G G GKT T+ + + +L+LNAS + I ++RNKIK+
Sbjct: 16 FFKINSFPNFLLYGSSGTGKTFTVENFLKTARNKNIISRILKLNASQNNSISIIRNKIKI 75
Query: 417 FAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 515
F + ++ + K+V++DEAD ++ +Q+ALR
Sbjct: 76 FCRS--SIQSKKLKVVVIDEADLLSVISQEALR 106
>UniRef50_A2SQR6 Cluster: Replication factor C large subunit; n=1;
Methanocorpusculum labreanum Z|Rep: Replication factor C
large subunit - Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z)
Length = 476
Score = 64.1 bits (149), Expect = 2e-09
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLARAL 329
+ W EKYRP DI+GN V ++ +AKT + ++ G PG+GKT+ L LAR
Sbjct: 1 MDWAEKYRPMHLADILGNGSAVRQIVDWAKTWTPDSRPLLFTGKPGIGKTSAALALAR-- 58
Query: 330 LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQ 506
VLELNAS+ R ++ ++ + +L K++I+DE D++ A +
Sbjct: 59 ---DMDWEVLELNASDARTKTII-ERVAGNSSTTTSLFGAGRKLIIIDEVDNLEGNADR 113
>UniRef50_O29072 Cluster: Replication factor C large subunit; n=1;
Archaeoglobus fulgidus|Rep: Replication factor C large
subunit - Archaeoglobus fulgidus
Length = 479
Score = 64.1 bits (149), Expect = 2e-09
Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 11/120 (9%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPNIIIAGPPGVGKTTTILCLARALL 332
W+EKYRP+T +++V ++ ++R+ +AK+ G+ P +++AGPPGVGKT+ L LA +
Sbjct: 3 WVEKYRPKTLEEVVADKSIITRVIKWAKSWKRGSKP-LLLAGPPGVGKTSLALALANT-M 60
Query: 333 GVSFKDAVLELNASNDRGIDVVR--------NKIKMFAQQKVTLPPGRHKIVILDEADSM 488
G +ELNAS+ R V+ N+ + ++ G+ K++ILDE D++
Sbjct: 61 GWE----AVELNASDQRSWRVIERIVGEGAFNETISDEGEFLSSRIGKLKLIILDEVDNI 116
>UniRef50_UPI000049936A Cluster: Activator 1 140 kDa subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: Activator 1 140 kDa
subunit - Entamoeba histolytica HM-1:IMSS
Length = 718
Score = 63.3 bits (147), Expect = 4e-09
Identities = 39/125 (31%), Positives = 68/125 (54%), Gaps = 8/125 (6%)
Frame = +3
Query: 147 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN--APN---IIIAGPPGVGKTTTIL 311
S + W EKYRPQT D++GN++ +++ + P+ +++AG PGVGKTT
Sbjct: 241 SNEIIWTEKYRPQTKSDLIGNKNQIAKFYTWINKWEKVIPDRRAVLLAGAPGVGKTTVSK 300
Query: 312 CLARALLGVSFKDAVLELNASNDRGIDVVRNKIK-MFAQQKVTLPPGRHK--IVILDEAD 482
+ + L F +E NAS+ R + IK +F ++++ ++K ++I+DE D
Sbjct: 301 IVGKTL---GFNP--IEFNASDTRNKSSIELAIKRIFLNGQISIDGSKNKKPLIIMDEVD 355
Query: 483 SMTDG 497
M+ G
Sbjct: 356 GMSSG 360
>UniRef50_Q5V1F7 Cluster: Replication factor C large subunit; n=5;
Halobacteriaceae|Rep: Replication factor C large subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 508
Score = 62.9 bits (146), Expect = 5e-09
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT--GNAPNIIIAGPPGVGKTTTILCLARAL 329
+ W EKYRP T ++ GN+ L +A+T + +I+ G PG+GKT+ LA
Sbjct: 1 MDWTEKYRPTTLSEVRGNDKARDALKKWAETWDDHREAVILYGSPGIGKTSAAHALAN-- 58
Query: 330 LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGAQ 503
+ +ELNAS+ R DV+ N++ A + TL G ++VI+DEAD++ A
Sbjct: 59 ---DMEWPTIELNASDSRTKDVI-NRVAGEAAKSGTLTAGGGGRRLVIMDEADNIHGNAD 114
Query: 504 Q 506
+
Sbjct: 115 R 115
>UniRef50_Q8TUC8 Cluster: Replication factor C subunit; n=4;
Methanosarcinaceae|Rep: Replication factor C subunit -
Methanosarcina acetivorans
Length = 344
Score = 61.7 bits (143), Expect = 1e-08
Identities = 29/72 (40%), Positives = 43/72 (59%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS 341
W KYR +T + ++GNE V L+ ++G P++I GP GKTT L LAR L G +
Sbjct: 8 WTLKYRAETLEGMLGNEHAVRTLSELLQSGTLPHLIFYGPENSGKTTASLALARELYGET 67
Query: 342 FKDAVLELNASN 377
+K+ + NAS+
Sbjct: 68 WKNNFVYFNASD 79
>UniRef50_A0M2F5 Cluster: DNA polymerase III subunit gamma/tau;
n=14; Bacteroidetes|Rep: DNA polymerase III subunit
gamma/tau - Gramella forsetii (strain KT0803)
Length = 653
Score = 61.3 bits (142), Expect = 2e-08
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLGVSFK 347
KYRPQTF D+VG + + LA + A ++ GP GVGKTT LA+ + +
Sbjct: 10 KYRPQTFKDVVGQQAITNTLANAINNNHLAQALLFTGPRGVGKTTCARILAKMINQKETQ 69
Query: 348 DA-------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGA 500
D + EL+A+++ +D +RN I +V +PP G +K+ I+DE ++ A
Sbjct: 70 DPNEDFAFNIFELDAASNNSVDDIRNLI-----DQVRIPPQVGNYKVYIIDEVHMLSASA 124
Query: 501 QQA 509
A
Sbjct: 125 FNA 127
>UniRef50_A4CK17 Cluster: DNA polymerase III subunit gamma/tau; n=3;
Flavobacteriales|Rep: DNA polymerase III subunit
gamma/tau - Robiginitalea biformata HTCC2501
Length = 631
Score = 60.9 bits (141), Expect = 2e-08
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Frame = +3
Query: 171 KYRPQTFDDIVGNED-TVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL----- 332
KYRPQ F+D+VG + T + L A ++ GP GVGKTT LA+ +
Sbjct: 21 KYRPQQFEDVVGQQAITRTLLNAIENDHLAQALLFCGPRGVGKTTCARILAKKINEDGNQ 80
Query: 333 --GVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGA 500
G F + EL+A+++ +D +RN I +V +PP G++K+ I+DE ++ A
Sbjct: 81 RDGEDFAFNIFELDAASNNSVDDIRNLI-----DQVRIPPQVGKYKVYIIDEVHMLSQAA 135
Query: 501 QQA 509
A
Sbjct: 136 FNA 138
>UniRef50_A3CTR4 Cluster: Replication factor C large subunit; n=1;
Methanoculleus marisnigri JR1|Rep: Replication factor C
large subunit - Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1)
Length = 454
Score = 60.9 bits (141), Expect = 2e-08
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLARAL 329
+ W+EKYRPQ D+VGN V + +A+ + +I+ G PG GKT++ LA
Sbjct: 1 MDWVEKYRPQHLQDVVGNSGAVRLIYEWARDWSRQKKPLILYGKPGTGKTSSAYALAN-- 58
Query: 330 LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSM 488
V+ELNAS+ R ++ +L K+++LDEAD++
Sbjct: 59 ---DMNWEVVELNASDQR-TKAALERVAGAGSTTASLSGASRKLILLDEADNL 107
>UniRef50_Q975D4 Cluster: Replication factor C large subunit; n=5;
Sulfolobaceae|Rep: Replication factor C large subunit -
Sulfolobus tokodaii
Length = 440
Score = 60.5 bits (140), Expect = 3e-08
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTG--NAPN---IIIAGPPGVGKTTTILCLA 320
L W KYRP+T +++ ED L + ++ PN +++ GPPGVGKTT LA
Sbjct: 3 LQWFLKYRPKTLNEVENEEDAKKELVEWIESWLKGKPNYKAVLLYGPPGVGKTTLAEALA 62
Query: 321 RALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSM 488
R +K + E+NAS+ R ++ +R + A T+ + K+++LDE D +
Sbjct: 63 R-----DYKLELFEMNASDSRNLNDIRTMAER-ASITGTIFGIKGKLILLDEVDGL 112
>UniRef50_A7AMJ0 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 944
Score = 59.7 bits (138), Expect = 5e-08
Identities = 50/136 (36%), Positives = 72/136 (52%), Gaps = 9/136 (6%)
Frame = +3
Query: 135 SSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPN-IIIAGPPGVGKTT 302
+S+ +T+LP EKYRP D++GNE + ++ + K+ G+ P +++GPPGVGKTT
Sbjct: 424 TSTDNTSLPLCEKYRPIHLTDLIGNEANIRKVVDWLKSWSPGSLPACALLSGPPGVGKTT 483
Query: 303 TILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMF---AQQKVTLPPGRHK--IVI 467
T +A A G +E NAS+ R V KI M Q L R K +V+
Sbjct: 484 TAKIVA-AECGYE----CVEFNASDLRNKSAV-EKISMLVTGGQSFSFLGECRMKKSLVL 537
Query: 468 LDEADSMTDGAQQALR 515
LDE D M G + L+
Sbjct: 538 LDEIDGMGAGDRGGLQ 553
>UniRef50_UPI00015BB275 Cluster: replication factor C large subunit;
n=1; Ignicoccus hospitalis KIN4/I|Rep: replication
factor C large subunit - Ignicoccus hospitalis KIN4/I
Length = 476
Score = 59.3 bits (137), Expect = 7e-08
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAK---TGNAPN---IIIAGPPGVGKTTTILCL 317
+PWI KYRP+ +D++ E L + K +G P ++ GPPGVGKT+ + +
Sbjct: 4 VPWIIKYRPKRVEDVIDQEKAKEVLIPWIKKWLSGTPPEKRAALLWGPPGVGKTSLVEAI 63
Query: 318 ARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT 491
F +E+NAS+ R + ++ + A K LPP + ++++LDE D ++
Sbjct: 64 CN-----EFNLEKIEMNASDFRRKGDI-ERVAIAAATKKPLPPWKGRLILLDEVDGLS 115
>UniRef50_Q2RMH2 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Clostridia|Rep: DNA polymerase III, subunits
gamma and tau - Moorella thermoacetica (strain ATCC
39073)
Length = 589
Score = 58.4 bits (135), Expect = 1e-07
Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 22/136 (16%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALLGVSFK 347
++RP+TF ++VG E L +TG + + GP G GKT+T LARA+ ++ +
Sbjct: 10 QWRPRTFAEVVGQEHITRTLRNALRTGRLVHAYLFCGPRGTGKTSTAKILARAINCLAPR 69
Query: 348 DA-------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIV 464
+ VLE++A+++RGID +RN I +K+ L P GR+K+
Sbjct: 70 EGEPCNECANCRRILAGNSLDVLEMDAASNRGIDEIRNLI-----EKIPLGPVEGRYKVY 124
Query: 465 ILDEADSMTDGAQQAL 512
I+DE +T A AL
Sbjct: 125 IIDEVHMLTQEAFNAL 140
>UniRef50_A2E9V5 Cluster: Differentiation specific element binding
protein, putative; n=1; Trichomonas vaginalis G3|Rep:
Differentiation specific element binding protein,
putative - Trichomonas vaginalis G3
Length = 694
Score = 58.4 bits (135), Expect = 1e-07
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 10/129 (7%)
Frame = +3
Query: 141 SKSTNLPWIEKYRPQTFDDIVGNEDTVSR----LAVFAKTGNAPNIIIAGPPGVGKTTTI 308
S +TNL EKYRPQ +D++GN+D + + L F+K ++I+GPPG+GKT+T
Sbjct: 216 SSATNLI-SEKYRPQNRNDLIGNKDLIEKIDNWLITFSKQDKKA-VLISGPPGIGKTSTA 273
Query: 309 LCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTL------PPGRHKIVIL 470
L LA+ S V+E NAS+ R + + K K + +I
Sbjct: 274 LLLAK-----SRGYHVVEYNASDVRNKAAIEDIAKTLFNGKTLYSFTQQNTNNKQHAIIF 328
Query: 471 DEADSMTDG 497
DE D M+ G
Sbjct: 329 DEIDGMSTG 337
>UniRef50_A2SRY4 Cluster: DNA polymerase III gamma/tau subunits-like
protein; n=1; Methanocorpusculum labreanum Z|Rep: DNA
polymerase III gamma/tau subunits-like protein -
Methanocorpusculum labreanum (strain ATCC 43576 / DSM
4855 / Z)
Length = 332
Score = 58.4 bits (135), Expect = 1e-07
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS 341
WIEKYRP +F++++G V +L+ +A GN P++++ G G GK++ + +R S
Sbjct: 3 WIEKYRPTSFEEVIGQNSPVKQLSAYAALGNLPHLLVIGRSGCGKSSALEVFSRRFYTES 62
Query: 342 FKD--AVLELN----------ASNDRGIDVV-RNK-----IKMFAQQKVTLPP--GRHKI 461
+ VL ++ A NDR + +NK K + +L P ++
Sbjct: 63 AAENTTVLPVSVMFSQGHTYFAENDRFAHLYQKNKSVLANFKYIVRWHASLKPLSAPFRL 122
Query: 462 VILDEADSMTDGAQQALRTHHGAVFQYNSFC 554
+I D A +T AQ ALR + QY+ C
Sbjct: 123 IIFDGAGDLTKDAQAALRR---IMEQYSQTC 150
>UniRef50_A3H683 Cluster: AAA ATPase, central region; n=1;
Caldivirga maquilingensis IC-167|Rep: AAA ATPase,
central region - Caldivirga maquilingensis IC-167
Length = 418
Score = 58.0 bits (134), Expect = 2e-07
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAK---TGNAPN-IIIAGPPGVGKTTTILCLAR 323
LPW EKYRP++ DIV E+ + + +G I+++GPPG GKTT + LA
Sbjct: 6 LPWFEKYRPRSLKDIVNQEEVKKTMEDWISKWLSGKEKRAILLSGPPGTGKTTMVHALA- 64
Query: 324 ALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQ 503
+ + E+NAS+ R +R I A + +L R K+V+ DE D + A
Sbjct: 65 ----YDYGLELYEMNASDVRTASRIRETIGK-ALTQGSLFGFRGKLVLFDEVDGINVRAD 119
Query: 504 Q 506
Q
Sbjct: 120 Q 120
>UniRef50_Q8ZYK3 Cluster: Replication factor C large subunit; n=4;
Pyrobaculum|Rep: Replication factor C large subunit -
Pyrobaculum aerophilum
Length = 422
Score = 58.0 bits (134), Expect = 2e-07
Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 20/131 (15%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFA--------------------KTGNAPNIIIA 275
LPWIEKYRP++F +IV E+ LA + + A I++A
Sbjct: 3 LPWIEKYRPKSFAEIVNQEEAKYTLASWICLKFRAPKEFCTRWAKKRDKEVAEAKAILLA 62
Query: 276 GPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRH 455
GPPGVGKTT + LAR + + ++ELNAS+ R D +R I ++ +L
Sbjct: 63 GPPGVGKTTLVHALAREI-----RYELIELNASDVRTADRLRQVIGRGLRES-SLFGFEG 116
Query: 456 KIVILDEADSM 488
K+V+ DE D +
Sbjct: 117 KMVLFDEVDGL 127
>UniRef50_A0Q156 Cluster: ATPase, AAA family; n=1; Clostridium novyi
NT|Rep: ATPase, AAA family - Clostridium novyi (strain
NT)
Length = 419
Score = 56.8 bits (131), Expect = 3e-07
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Frame = +3
Query: 147 STNLPWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILCL 317
+ N P E+ RP+ ++ G + + + L +T N +II+ GPPGVGKTT L
Sbjct: 12 NVNKPLAERMRPRNLNEFFGQKHIIGKGKLLRRLIETDNLTSIILYGPPGVGKTT----L 67
Query: 318 ARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG 497
A ++ + K ++LNA++ G+ +R IK ++V G+ I +DE S+ G
Sbjct: 68 A-YIISLETKSEFVKLNATS-AGVKEIREYIK--KAEEVLKFYGKRTIFFIDEIHSLKKG 123
Query: 498 AQQ 506
AQQ
Sbjct: 124 AQQ 126
>UniRef50_Q6CD04 Cluster: Similar to ca|CA5054|IPF3704 Candida
albicans unknown function; n=1; Yarrowia lipolytica|Rep:
Similar to ca|CA5054|IPF3704 Candida albicans unknown
function - Yarrowia lipolytica (Candida lipolytica)
Length = 626
Score = 56.4 bits (130), Expect = 5e-07
Identities = 47/132 (35%), Positives = 64/132 (48%)
Frame = +3
Query: 117 KKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGK 296
K ++ T LP E RPQT DDI G ++ ++ L F G P+II GPPGVGK
Sbjct: 112 KSAATKEPARHTPLP--ELCRPQTLDDISGQKELMAVLRRFVAYGRIPSIIFWGPPGVGK 169
Query: 297 TTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDE 476
TT LAR L S + +EL+A+ + DV K+ A + L R I+ +DE
Sbjct: 170 TT----LARILAKTS-GNRFVELSATQNNVADV--KKVIDQANNEWKLLK-RGTILFIDE 221
Query: 477 ADSMTDGAQQAL 512
+ Q L
Sbjct: 222 LHRFSKAQQDVL 233
>UniRef50_Q1Q394 Cluster: Similar to DNA polymerase III subunit
gamma/tau; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Similar to DNA polymerase III subunit gamma/tau -
Candidatus Kuenenia stuttgartiensis
Length = 558
Score = 56.0 bits (129), Expect = 6e-07
Identities = 49/136 (36%), Positives = 67/136 (49%), Gaps = 22/136 (16%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLGV--- 338
+YRPQTF DIVG V L +T A + AGP GVGKT+T L++AL V
Sbjct: 9 RYRPQTFSDIVGQAPIVKTLGNAIRTDRVAHAYLFAGPRGVGKTSTARILSKALNCVNGP 68
Query: 339 ------------SFKDA----VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIV 464
S + VLE++ +++RGID +RN +Q V P R++I
Sbjct: 69 TDTPCNVCNICQSISEGSDIDVLEIDGASNRGIDEIRN-----IRQNVGFAPSRARYRIY 123
Query: 465 ILDEADSMTDGAQQAL 512
I+DE +T A AL
Sbjct: 124 IIDEVHMLTREAFNAL 139
>UniRef50_P60373 Cluster: Replication factor C large subunit; n=1;
Nanoarchaeum equitans|Rep: Replication factor C large
subunit - Nanoarchaeum equitans
Length = 430
Score = 56.0 bits (129), Expect = 6e-07
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Frame = +3
Query: 111 PEKKQVKPSSSKST--NLPWIEKYRPQTFDDIVGNEDTVSRLAVFA----KTGNAPNIII 272
P K+V+P K ++P KYRP+T D++ E L + K +++
Sbjct: 14 PVIKKVEPPKKKEIKRDIPLFIKYRPKTLDEVENQEQAKQILRDYVINYKKKYKGKALLL 73
Query: 273 AGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR 452
GPPG GKT+++ LA LG VLE+NAS++R + + + ++ K GR
Sbjct: 74 YGPPGTGKTSSVYALANE-LGYE----VLEVNASDERDAIHIHHIVGEASKGKPLFHKGR 128
Query: 453 HKIVILDEADSMT 491
I+++DE D ++
Sbjct: 129 --IILVDEVDGLS 139
>UniRef50_Q89BN2 Cluster: DNA polymerase III tau subunit; n=22;
Alphaproteobacteria|Rep: DNA polymerase III tau subunit
- Bradyrhizobium japonicum
Length = 613
Score = 55.6 bits (128), Expect = 8e-07
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Frame = +3
Query: 135 SSSKSTNLPW---IEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTT 302
S+S++ N P+ KYRP +FDD++G E V ++ +TG P I+ G GVGKTT
Sbjct: 12 SASQAGNAPYRVLARKYRPSSFDDLIGQEAVVRTVSNAFETGRIPQAWILTGVRGVGKTT 71
Query: 303 TILCLARAL 329
T LARAL
Sbjct: 72 TARILARAL 80
>UniRef50_A1RWU6 Cluster: Replication factor C large subunit; n=1;
Thermofilum pendens Hrk 5|Rep: Replication factor C
large subunit - Thermofilum pendens (strain Hrk 5)
Length = 413
Score = 55.6 bits (128), Expect = 8e-07
Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Frame = +3
Query: 135 SSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT--GNAPN---IIIAGPPGVGKT 299
S+ K +PW EKYRP D+VGNE+ + + + P+ ++ GPPG GKT
Sbjct: 2 SAVKVQLVPWTEKYRPARIADVVGNEEAKKKYVAWINSWVKGKPSKKAALLYGPPGSGKT 61
Query: 300 TTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEA 479
+ + A+ F ++ELNAS+ R + ++ ++ + A ++ KI++LDE
Sbjct: 62 SIVHATAK-----EFSWELIELNASDVRTREALQQRL-LGALNTRSVLGYSGKIILLDEV 115
Query: 480 DSMT 491
D ++
Sbjct: 116 DGIS 119
>UniRef50_Q03ZG9 Cluster: DNA polymerase III, gamma/tau subunit;
n=1; Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293|Rep: DNA polymerase III, gamma/tau subunit -
Leuconostoc mesenteroides subsp. mesenteroides (strain
ATCC 8293 /NCDO 523)
Length = 575
Score = 55.2 bits (127), Expect = 1e-06
Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Frame = +3
Query: 174 YRPQTFDDIVGNE---DTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS- 341
YRP++FDD+VG + T+ +TG+A + +GP G GKT+ AR + G++
Sbjct: 12 YRPRSFDDMVGQKIITQTLKNAIATQQTGHA--YLFSGPRGTGKTSAAKIFAREVNGIAP 69
Query: 342 -FKDA----VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQ 506
D+ ++E++A+++ G+D +RN I+ A +KI I+DE ++ GA
Sbjct: 70 ETDDSQIPDIIEIDAASNNGVDEIRN-IRDGANYAPI--ESEYKIYIIDEVHMLSSGAFN 126
Query: 507 AL 512
AL
Sbjct: 127 AL 128
>UniRef50_A0NIM4 Cluster: DNA-dependent DNA polymerase III,
gamma/tau subunits; n=2; Oenococcus oeni|Rep:
DNA-dependent DNA polymerase III, gamma/tau subunits -
Oenococcus oeni ATCC BAA-1163
Length = 608
Score = 55.2 bits (127), Expect = 1e-06
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALLGV--- 338
+YRP+TF D+VG L K+ + + AGP G GKT+ AR + G+
Sbjct: 22 QYRPRTFSDLVGQTVIAQTLENALKSNKVGHAYLFAGPRGTGKTSVAKIFAREIEGIPDD 81
Query: 339 ----SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQ 506
SF D ++E++A+++ G+D +RN + + KI I+DE ++ GA
Sbjct: 82 TDRESFSD-IIEIDAASNNGVDEIRNLRDAANYAPIEY---QFKIYIIDEVHMLSTGAFN 137
Query: 507 AL 512
AL
Sbjct: 138 AL 139
>UniRef50_Q8TZC5 Cluster: Replication factor C large subunit; n=1;
Methanopyrus kandleri|Rep: Replication factor C large
subunit - Methanopyrus kandleri
Length = 510
Score = 55.2 bits (127), Expect = 1e-06
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAK---TGNAPN---IIIAGPPGVGKTTTILCL 317
+PW+EKYRP++ ++V ++ LA +A G+ P +++ GPPG GKT+ L
Sbjct: 2 VPWVEKYRPRSLKELVNQDEAKKELAAWANEWARGSIPEPRAVLLHGPPGTGKTSAAYAL 61
Query: 318 ARALLGVSFKDAVLELNASNDRGIDVV 398
A F V+ELNAS+ R +V+
Sbjct: 62 AH-----DFGWDVIELNASDKRTRNVI 83
>UniRef50_Q9YBS5 Cluster: Replication factor C large subunit; n=1;
Aeropyrum pernix|Rep: Replication factor C large subunit
- Aeropyrum pernix
Length = 479
Score = 55.2 bits (127), Expect = 1e-06
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Frame = +3
Query: 132 PSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPN---IIIAGPPGVG 293
P ++S+ +PW+ KYRP+ +D+V + L + K G P+ ++ GPPGVG
Sbjct: 2 PIVARSSRVPWVIKYRPKRVEDVVNQDQAKKILVPWFKAWLEGRKPDKRAALLYGPPGVG 61
Query: 294 KTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILD 473
KT+ + +A F ++ELNAS+ R + + ++++ G +++LD
Sbjct: 62 KTSLVEAIAS-----EFNLEMIELNASDYRRRSDIERIVGAASRKRSMFKRG--VVILLD 114
Query: 474 EADSM 488
E D +
Sbjct: 115 EVDGI 119
>UniRef50_Q4P896 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 566
Score = 54.0 bits (124), Expect = 2e-06
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTVSR-LAVFAKTGNAPNIIIAGPPGVGKTTTILCLARA 326
P+ E+ RPQT D+ VG D V+ L + + G P++I+ GPPG GKTT LA++
Sbjct: 27 PFAERMRPQTLDEYVGQSDVVNGPLKMLLRQGKIPSMILWGPPGTGKTTLARLLAKS 83
>UniRef50_P40938 Cluster: Replication factor C subunit 3; n=64;
Eukaryota|Rep: Replication factor C subunit 3 - Homo
sapiens (Human)
Length = 356
Score = 54.0 bits (124), Expect = 2e-06
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 28/146 (19%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS 341
W++KYRP + + +++ ++L + G+ P++++ GP G GK T I+C+ R L GV
Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 342 FK------------------------DAVLELNASNDRGID--VVRNKIKMFA--QQKVT 437
+ + LE+N S+ D V++ +K A QQ T
Sbjct: 64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123
Query: 438 LPPGRHKIVILDEADSMTDGAQQALR 515
K+V+L E D +T AQ ALR
Sbjct: 124 NSQRDFKVVLLTEVDKLTKDAQHALR 149
>UniRef50_Q3A8S0 Cluster: Putative DNA polymerase III, gamma/tau
subunits; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: Putative DNA polymerase III, gamma/tau
subunits - Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008)
Length = 511
Score = 53.6 bits (123), Expect = 3e-06
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 20/134 (14%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL------ 329
K+RP+TF +IVG E V L T + + +GP G GKTTT LA+A+
Sbjct: 8 KWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAVNCEHPV 67
Query: 330 -----------LGVSFKDA--VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 470
+G++ + V E++A+++RGID +R ++ K+ G++K+ I+
Sbjct: 68 EGEPCNQCPSCIGINNQSLLNVFEIDAASNRGIDEIR---ELRESIKLVPAQGKYKVYII 124
Query: 471 DEADSMTDGAQQAL 512
DE +T+ A AL
Sbjct: 125 DEVHMLTNEAFNAL 138
>UniRef50_Q1QXX6 Cluster: AAA ATPase, central region; n=1;
Chromohalobacter salexigens DSM 3043|Rep: AAA ATPase,
central region - Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB13768)
Length = 469
Score = 53.6 bits (123), Expect = 3e-06
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 3/132 (2%)
Frame = +3
Query: 135 SSSKSTNLPWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTT 305
+SS+ N P + RP+ DD VG E V L A++G ++I+ GPPGVGKTT
Sbjct: 30 ASSQPDNTPLAYRMRPRRLDDYVGQEALVGPGKPLRRMAESGAVRSMILWGPPGVGKTTL 89
Query: 306 ILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADS 485
LA A A+LE ++ G+ +R ++ + +V G+ ++ LDE
Sbjct: 90 ADILADA------SGAMLERLSAVMAGVKDIRAAVERAREGQVR---GQPTLLFLDEIHR 140
Query: 486 MTDGAQQALRTH 521
+ Q AL H
Sbjct: 141 LNKSQQDALLPH 152
>UniRef50_Q8SR43 Cluster: DNA REPLICATION FACTOR C 38kDa SUBUNIT;
n=1; Encephalitozoon cuniculi|Rep: DNA REPLICATION
FACTOR C 38kDa SUBUNIT - Encephalitozoon cuniculi
Length = 354
Score = 53.6 bits (123), Expect = 3e-06
Identities = 24/58 (41%), Positives = 35/58 (60%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG 335
WIEKYRP++FD+++G E+ L + P++I+ G G GK T +LCL L G
Sbjct: 3 WIEKYRPRSFDEMIGREEASGLLKSYT-LETIPHMIVHGRSGHGKKTVLLCLVNHLYG 59
>UniRef50_Q1DWQ3 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 963
Score = 53.6 bits (123), Expect = 3e-06
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 37/158 (23%)
Frame = +3
Query: 138 SSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLA---------VF-----AKTGNAPN---- 263
S K+ N+ W EKYR + F D++G++ T + VF ++T N P
Sbjct: 204 SEKAANVLWTEKYRARKFKDLIGDDRTHRAVLRWLKGWDSIVFPNLAKSRTQNKPVDFEE 263
Query: 264 ------IIIAGPPGVGKTTTI-LCLARALLGVSFKDAVLELNASNDRGIDVVRNKIK--- 413
+++ GPPG+GKTT +C ++A G VLE+NAS++R DVV+ +IK
Sbjct: 264 PTHRKILLLTGPPGLGKTTLAHVCASQA--GYE----VLEINASDERSRDVVKGRIKDAV 317
Query: 414 ---------MFAQQKVTLPPGRHKIVILDEADSMTDGA 500
+ A K PGR V++DE D + G+
Sbjct: 318 GTENVKGICVKADGKAIRKPGRPVCVVVDEVDGVVTGS 355
>UniRef50_P42425 Cluster: ATP-dependent protease La homolog; n=46;
Firmicutes|Rep: ATP-dependent protease La homolog -
Bacillus subtilis
Length = 552
Score = 53.6 bits (123), Expect = 3e-06
Identities = 26/62 (41%), Positives = 37/62 (59%)
Frame = +3
Query: 114 EKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVG 293
E +Q++ + S + P EK RP++F DIVG ED + L N ++I+ GPPGVG
Sbjct: 43 EMEQLRKMRAISLSEPLSEKVRPKSFKDIVGQEDGIKALKAALCGPNPQHVIVYGPPGVG 102
Query: 294 KT 299
KT
Sbjct: 103 KT 104
>UniRef50_Q9WZF2 Cluster: DNA polymerase III, gamma and tau subunit;
n=2; Thermotoga|Rep: DNA polymerase III, gamma and tau
subunit - Thermotoga maritima
Length = 478
Score = 52.8 bits (121), Expect = 6e-06
Identities = 47/136 (34%), Positives = 69/136 (50%), Gaps = 22/136 (16%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFA--KTGNAPNIIIAGPPGVGKTTTILCLARAL----- 329
KYRP+TF ++V N+D V + + A K A I AGP G GKTT LA++L
Sbjct: 7 KYRPKTFSEVV-NQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNCENR 65
Query: 330 LGV---------------SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIV 464
GV +F D V+EL+A+++RGID +R + + G++K+
Sbjct: 66 KGVEPCNSCRACREIDEGTFMD-VIELDAASNRGIDEIRRIRDAVGYRPM---EGKYKVY 121
Query: 465 ILDEADSMTDGAQQAL 512
I+DE +T A AL
Sbjct: 122 IIDEVHMLTKEAFNAL 137
>UniRef50_A2BL93 Cluster: Replication factor C large subunit; n=2;
Desulfurococcales|Rep: Replication factor C large
subunit - Hyperthermus butylicus (strain DSM 5456 / JCM
9403)
Length = 484
Score = 52.8 bits (121), Expect = 6e-06
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Frame = +3
Query: 147 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPN---IIIAGPPGVGKTTTI 308
S LPWI KYRP+ +D+V E+ + ++ G P + GP GVGKT+ +
Sbjct: 2 SDKLPWIIKYRPKRVEDVVDQEEAKKLFLPWLRSWLQGRIPERKAALFYGPAGVGKTSLV 61
Query: 309 LCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSM 488
A + ++E+NAS+ R + K+ A Q +L + KI++LDE D +
Sbjct: 62 EAAAN-----EYGLELIEMNASDFRRKSDIERIAKIAATQ-FSLFGRKRKIILLDEVDGI 115
Query: 489 TDGAQQ 506
+ A +
Sbjct: 116 SGTADR 121
>UniRef50_Q1EZ15 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Clostridiaceae|Rep: DNA polymerase III,
subunits gamma and tau - Clostridium oremlandii OhILAs
Length = 563
Score = 52.4 bits (120), Expect = 8e-06
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 22/136 (16%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLGVSFK 347
++RP+ F+D++G + ++ L + N A + G G GKT+T ARA+ +S +
Sbjct: 9 RFRPKVFEDVIGQDQVITILKNQISSSNIAHAYLFTGTRGTGKTSTAKIFARAVNCLSAE 68
Query: 348 DA-------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIV 464
DA V+E++A+++ G+D VR ++ V PP G++KI
Sbjct: 69 DANPCNQCEVCEGILTENIMDVIEIDAASNNGVDNVRE-----IRENVKYPPSKGKYKIY 123
Query: 465 ILDEADSMTDGAQQAL 512
I+DE ++ GA AL
Sbjct: 124 IIDEVHMLSTGAFNAL 139
>UniRef50_A6QBX8 Cluster: DNA polymerase III, gamma/tau subunits;
n=1; Sulfurovum sp. NBC37-1|Rep: DNA polymerase III,
gamma/tau subunits - Sulfurovum sp. (strain NBC37-1)
Length = 666
Score = 52.4 bits (120), Expect = 8e-06
Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 21/141 (14%)
Frame = +3
Query: 153 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN--APNIIIAGPPGVGKTTTILCLARA 326
+L KYRP TFDD++G +D+VS+ A GN + + +G G GKT+T A+A
Sbjct: 2 SLALARKYRPATFDDLIG-QDSVSQTLSLALDGNRLSHAYLFSGLRGSGKTSTARIFAKA 60
Query: 327 LL---GVSFKDA----------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPG 449
LL G + ++E++A+++RGID +++ I+ K
Sbjct: 61 LLCEQGTTSHPCGTCTHCVMAAENRHMDIIEMDAASNRGIDDIKDLIE---HTKYKPSSA 117
Query: 450 RHKIVILDEADSMTDGAQQAL 512
R+KI I+DE +T A AL
Sbjct: 118 RYKIFIIDEVHMLTTQAFNAL 138
>UniRef50_A3IWH2 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Cyanothece sp. CCY 0110|Rep: DNA polymerase III
gamma and tau subunits - Cyanothece sp. CCY 0110
Length = 373
Score = 52.4 bits (120), Expect = 8e-06
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 20/143 (13%)
Frame = +3
Query: 141 SKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCL 317
+K PW KYRPQ+ +D+ G + L + P ++++GP G GKT+T +
Sbjct: 6 TKQAFQPWHLKYRPQSINDLTGQDSVQKVLTRLIAEDSVPQALLLSGPKGTGKTSTARII 65
Query: 318 ARAL---LGVSFKDA----------------VLELNASNDRGIDVVRNKIKMFAQQKVTL 440
A +L GV+ V+EL+A++ G+D +R K+ A
Sbjct: 66 AMSLNCEKGVTTTPCGECKNCQAIQNGNSLDVVELDAASHNGVDDIR---KLVADASYAP 122
Query: 441 PPGRHKIVILDEADSMTDGAQQA 509
R ++ I+DEA +++ AQ A
Sbjct: 123 FSARTRVFIIDEAHQLSNSAQNA 145
>UniRef50_Q17P00 Cluster: Werner helicase interacting protein; n=2;
Endopterygota|Rep: Werner helicase interacting protein -
Aedes aegypti (Yellowfever mosquito)
Length = 560
Score = 52.4 bits (120), Expect = 8e-06
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Frame = +3
Query: 111 PEKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGP 281
P+K + K + +N+P EK RP D +G E + + L + P++I+ GP
Sbjct: 121 PDKNKAKVGDEEGSNIPLAEKMRPDELSDYIGQEQIIGKNTVLRTLFEKNTIPSMILWGP 180
Query: 282 PGVGKTTTI-LCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHK 458
PG GKTT + A S K L S G++ V+ +K+ K L R
Sbjct: 181 PGCGKTTLAHIIAAHCKKHGSMKFVKLSATMS---GVNDVKEAVKL---AKNDLAFKRKT 234
Query: 459 IVILDE 476
I+ +DE
Sbjct: 235 IMFMDE 240
>UniRef50_A0EHK8 Cluster: Chromosome undetermined scaffold_97, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_97,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 972
Score = 42.3 bits (95), Expect(2) = 8e-06
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Frame = +3
Query: 225 RLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVV 398
++ F GN + II+GPPG+GKT+ + +A A LG+ ++ NAS+ R +
Sbjct: 449 KMGRFQPVGNITSKACIISGPPGIGKTSMVRLVAEA-LGLK----LIVNNASDKRNKGSL 503
Query: 399 RNKIKMFAQQKVTL---PPGRHKIVILDEADSMT 491
R+ + V + P + I+++DE D MT
Sbjct: 504 RSVLNDLVDNSVLMNLFRPNKDFIIVMDEVDGMT 537
Score = 29.5 bits (63), Expect(2) = 8e-06
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 117 KKQVKPSS-SKSTNLPWIEKYRPQTFDDIVGNEDTVSRL 230
KKQ +P + + NL +KY P+ D+V N+ +V++L
Sbjct: 383 KKQDQPENVNLDKNLSLADKYMPKLLSDLVDNKSSVTQL 421
>UniRef50_Q6NC57 Cluster: Possible DNA polymerase III tau subunit;
n=8; Alphaproteobacteria|Rep: Possible DNA polymerase
III tau subunit - Rhodopseudomonas palustris
Length = 623
Score = 52.0 bits (119), Expect = 1e-05
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL 329
KYRP +FDD++G E V ++ TG P I+ G GVGKTTT LARAL
Sbjct: 33 KYRPNSFDDLIGQEAVVRTVSNAFDTGRIPQAWILTGVRGVGKTTTARILARAL 86
>UniRef50_O67707 Cluster: DNA polymerase III gamma subunit; n=3;
Aquifex aeolicus|Rep: DNA polymerase III gamma subunit -
Aquifex aeolicus
Length = 473
Score = 52.0 bits (119), Expect = 1e-05
Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 22/141 (15%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL- 329
+P+ KYRP+ F +++G E V L K + + AGP GVGKTT LA+AL
Sbjct: 4 VPFARKYRPKFFREVIGQEAPVRILKNAIKNDRVAHAYLFAGPRGVGKTTIARILAKALN 63
Query: 330 --------------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPG 449
GV F D ++E++A+++RGID VR +K K G
Sbjct: 64 CKNPSKGEPCGECENCREIDRGV-FPD-LIEMDAASNRGIDDVR-ALKEAVNYKPI--KG 118
Query: 450 RHKIVILDEADSMTDGAQQAL 512
++K+ I+DEA +T A AL
Sbjct: 119 KYKVYIIDEAHMLTKEAFNAL 139
>UniRef50_A7HJR0 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Fervidobacterium nodosum Rt17-B1|Rep: DNA
polymerase III, subunits gamma and tau -
Fervidobacterium nodosum Rt17-B1
Length = 517
Score = 52.0 bits (119), Expect = 1e-05
Identities = 49/136 (36%), Positives = 66/136 (48%), Gaps = 22/136 (16%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL------ 329
KYRP+ F DIVG E L K + I AGP G GKTTT LA++L
Sbjct: 7 KYRPKNFYDIVGQEHIKKLLTNALKLQKINHAYIFAGPRGTGKTTTARILAKSLNCEKNQ 66
Query: 330 LGVSFKDA-------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIV 464
G + V+EL+A+++RGID +R KIK + V P G++K+
Sbjct: 67 FGEPCNECTSCQAIDNGSHLDVIELDAASNRGIDEIR-KIK----EGVNFTPVMGKYKVY 121
Query: 465 ILDEADSMTDGAQQAL 512
I+DE +T A AL
Sbjct: 122 IIDEVHMLTREAFNAL 137
>UniRef50_Q5AF80 Cluster: Putative uncharacterized protein RAD24;
n=1; Candida albicans|Rep: Putative uncharacterized
protein RAD24 - Candida albicans (Yeast)
Length = 589
Score = 52.0 bits (119), Expect = 1e-05
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Frame = +3
Query: 129 KPSSSKSTNLPWIEKYRPQTFDDIVGNEDTV-----SRLAVFAKTGNAPNIIIAGPPGVG 293
K ++ + N WI+KYRP+T +I N + S + + KT N ++++GP G
Sbjct: 45 KSQTTINNNQQWIDKYRPKTTSEICINPTKLKQVKESMMKMINKTSNTRVLVLSGPSGSS 104
Query: 294 KTTTILCLARALLGV--SFKDAVLELNASND 380
K+TT+ LA L+ V +F V+E + S D
Sbjct: 105 KSTTVKLLAEELITVRDAFDSVVVEYDESED 135
>UniRef50_Q9ABG0 Cluster: DNA polymerase III, gamma and tau
subunits; n=5; Alphaproteobacteria|Rep: DNA polymerase
III, gamma and tau subunits - Caulobacter crescentus
(Caulobacter vibrioides)
Length = 608
Score = 51.6 bits (118), Expect = 1e-05
Identities = 28/54 (51%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL 329
KYRP+TF+D++G E V LA TG A ++ G GVGKTTT LARAL
Sbjct: 62 KYRPRTFEDLIGQEAMVRTLANAFSTGRIAHAFMLTGVRGVGKTTTARLLARAL 115
>UniRef50_A7HGU5 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Cystobacterineae|Rep: DNA polymerase III,
subunits gamma and tau - Anaeromyxobacter sp. Fw109-5
Length = 606
Score = 51.6 bits (118), Expect = 1e-05
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 20/134 (14%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL---LGV 338
KYRPQ F ++ G + V L+ KTG A + GP GVGKTTT +A+AL G
Sbjct: 9 KYRPQQFGEMSGQQHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTARLVAKALNCEKGP 68
Query: 339 SFKDA----------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 470
+ + V+E++A+++ G+D VR+ ++ K R+K+ ++
Sbjct: 69 TAEPCGACTPCVEIAEGRAVDVVEIDAASNNGVDNVRDIVEAV---KYRPARDRYKVFVV 125
Query: 471 DEADSMTDGAQQAL 512
DE ++ GA AL
Sbjct: 126 DEVHMLSTGAFNAL 139
>UniRef50_Q56C06 Cluster: Gp44 clamp-loader subunit; n=1;
Enterobacteria phage RB43|Rep: Gp44 clamp-loader subunit
- Enterobacteria phage RB43
Length = 332
Score = 51.6 bits (118), Expect = 1e-05
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Frame = +3
Query: 114 EKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGV 290
E K K S S W ++YRP T D+ + + F K+G N+ +++ PG
Sbjct: 11 ETKYGKISQSPD-EFAWDQRYRPTTIDECILPAADKEIMRGFIKSGRIDNMTLVSDSPGT 69
Query: 291 GKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 470
GKTT L +LG V+ +N S D G++ +R+ + FA G KI+++
Sbjct: 70 GKTTLAL-----VLGAEVDAEVMFVNGS-DCGVNFIRSDLDRFASSMTQKKGG--KIILI 121
Query: 471 DEAD 482
DE D
Sbjct: 122 DEFD 125
>UniRef50_Q1ATA7 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Rubrobacter xylanophilus DSM 9941|Rep: DNA
polymerase III, subunits gamma and tau - Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 567
Score = 51.2 bits (117), Expect = 2e-05
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 23/137 (16%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLA--------- 320
++RP+TF +I G E V L +TG A + +GP G GKT+T LA
Sbjct: 9 RWRPRTFGEIAGQEPVVRTLRRAIETGRVAHAYLFSGPRGTGKTSTAKVLAMGLNCAQGP 68
Query: 321 -----------RALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKI 461
R+++ S D V+E++A+++RGID +R + +V L P GR K+
Sbjct: 69 TPEPCGRCESCRSIVAGSSMD-VIEMDAASNRGIDEIRE-----LRDRVNLAPAAGRAKV 122
Query: 462 VILDEADSMTDGAQQAL 512
I+DE +T A AL
Sbjct: 123 YIIDEVHMLTTEAFNAL 139
>UniRef50_Q4PAP0 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 1104
Score = 51.2 bits (117), Expect = 2e-05
Identities = 35/90 (38%), Positives = 49/90 (54%)
Frame = +3
Query: 264 IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP 443
++I+GPPG+GKTT LA ++G V ELNAS+ R V + IKM A + +L
Sbjct: 435 MMISGPPGLGKTT----LAH-VIGAHAGYNVYELNASDARSAGAVEDVIKM-ALESGSLK 488
Query: 444 PGRHKIVILDEADSMTDGAQQALRTHHGAV 533
R +V++DE D T G A HG +
Sbjct: 489 DPRPTLVVIDEIDGATGGGGGASGESHGFI 518
>UniRef50_A2QMM8 Cluster: Contig An07c0070, complete genome; n=2;
Aspergillus niger|Rep: Contig An07c0070, complete genome
- Aspergillus niger
Length = 1080
Score = 51.2 bits (117), Expect = 2e-05
Identities = 36/115 (31%), Positives = 57/115 (49%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG 335
L W++ + P F +I ++ + + +++ GPPG+GKTT AR G
Sbjct: 424 LRWLKAWEPIVFPNIARSKAKKPYGKEDEERTHRKVLLLCGPPGLGKTTLAHVCARQA-G 482
Query: 336 VSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGA 500
VLE+NAS+DR DVV+ +I+ T GR V++DE D + G+
Sbjct: 483 YE----VLEINASDDRSKDVVKGRIR---DSLGTENAGRPVCVVVDEVDGVVSGS 530
>UniRef50_A3VPV6 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Parvularcula bermudensis HTCC2503|Rep: DNA
polymerase III subunits gamma and tau - Parvularcula
bermudensis HTCC2503
Length = 607
Score = 50.8 bits (116), Expect = 2e-05
Identities = 28/54 (51%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL 329
KYRPQ+FDD++G+E V L FA A I+ G GVGKTTT +ARAL
Sbjct: 20 KYRPQSFDDLLGHEAMVRTLRNAFAADRIAHAFILTGVRGVGKTTTARIIARAL 73
>UniRef50_A6R2J2 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 982
Score = 50.8 bits (116), Expect = 2e-05
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 37/160 (23%)
Frame = +3
Query: 132 PSSSKSTNLPWIEKYRPQTFDDIVGNEDT----------------------VSRLAV--F 239
P S T+L W EKYR + F D++G+E T S+++ F
Sbjct: 231 PLKSNGTSLMWTEKYRARKFKDLIGDERTHRSVLRWLKGWDSIVFPGLTKLKSKVSTNDF 290
Query: 240 AKTGNAPNIIIAGPPGVGKTTTI-LCLARALLGVSFKDAVLELNASNDRGIDVVRNKIK- 413
+ + +++ GPPG+GKTT +C +A G VLE+NAS++R DVV+ +I+
Sbjct: 291 EERAHRKVLLLTGPPGLGKTTLAHVCAKQA--GYE----VLEINASDERSRDVVKGRIRD 344
Query: 414 -----------MFAQQKVTLPPGRHKIVILDEADSMTDGA 500
M A K PG+ +++DE D + G+
Sbjct: 345 AVGTENVKGVTMDAGGKRIRKPGKPVCIVVDEVDGVVSGS 384
>UniRef50_UPI0000E49FBB Cluster: PREDICTED: similar to MGC81266
protein; n=4; Deuterostomia|Rep: PREDICTED: similar to
MGC81266 protein - Strongylocentrotus purpuratus
Length = 1754
Score = 50.4 bits (115), Expect = 3e-05
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +3
Query: 267 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQ-KVTLP 443
++ GPPG+GKTT +AR G + V+E+NAS+DR ++V +N+++ Q V P
Sbjct: 1140 LLCGPPGLGKTTLAHIIARHA-GYN----VIEMNASDDRSLEVFKNRLQSSIQMTSVLTP 1194
Query: 444 PGRHKIVILDEADSMTDG 497
R +++DE D G
Sbjct: 1195 DQRPNCLVIDEIDGSPQG 1212
>UniRef50_Q6MPI4 Cluster: ATPase, AAA family; n=1; Bdellovibrio
bacteriovorus|Rep: ATPase, AAA family - Bdellovibrio
bacteriovorus
Length = 449
Score = 50.4 bits (115), Expect = 3e-05
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTV---SRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAR 323
P E RP+T DDI G + T+ S+L + G P++II GPPG GKTT L L++
Sbjct: 27 PLSEILRPKTLDDIFGQQKTLGPQSKLGQMLRKGYLPSLIIWGPPGTGKTTFALALSQ 84
>UniRef50_Q4A6Z5 Cluster: DNA polymerase III gamma and tau subunit;
n=1; Mycoplasma synoviae 53|Rep: DNA polymerase III
gamma and tau subunit - Mycoplasma synoviae (strain 53)
Length = 609
Score = 50.4 bits (115), Expect = 3e-05
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 17/131 (12%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFK 347
KYRPQ F +I+G + + L V + A + AGP G GKT+T A+A L S
Sbjct: 9 KYRPQNFHEIIGQDHIIQTLDNVISSEKIAHAFLFAGPKGTGKTSTARVFAKA-LNCSHS 67
Query: 348 DA---------------VLELNASNDRGIDVVRNKIKMFAQQKVTLP-PGRHKIVILDEA 479
+ ++E++A+++ G+D +RN +K Q LP ++KI I+DE
Sbjct: 68 EVRSQICESCPNQNSGDIIEMDAASNTGVDEIRN-LKENVDQ---LPFESKYKIYIIDEV 123
Query: 480 DSMTDGAQQAL 512
++ A AL
Sbjct: 124 HMLSKSAFNAL 134
>UniRef50_Q2JLX3 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Synechococcus|Rep: DNA polymerase III,
subunits gamma and tau - Synechococcus sp. (strain
JA-2-3B'a(2-13)) (Cyanobacteria bacteriumYellowstone
B-Prime)
Length = 779
Score = 50.4 bits (115), Expect = 3e-05
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 20/134 (14%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL------ 329
KYRPQ F D+VG V LA + G AP + GP G GKT++ LA++L
Sbjct: 13 KYRPQRFADVVGQGAVVQTLANAIRLGRVAPAYLFCGPRGTGKTSSARILAKSLNCEQGP 72
Query: 330 -------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 470
+ VLE++A+++ G+D +R I+ V R+K+ ++
Sbjct: 73 TPDPCQACSQCRAITAGASLDVLEIDAASNTGVDNIRELIERAQFAPVN---SRYKVYVI 129
Query: 471 DEADSMTDGAQQAL 512
DE +++ A AL
Sbjct: 130 DECHMLSNAAFNAL 143
>UniRef50_A1VDA3 Cluster: AAA ATPase, central domain protein; n=4;
Desulfovibrionaceae|Rep: AAA ATPase, central domain
protein - Desulfovibrio vulgaris subsp. vulgaris (strain
DP4)
Length = 411
Score = 50.4 bits (115), Expect = 3e-05
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Frame = +3
Query: 147 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARA 326
S P E+ RP + VG R+ + P++++ GPPG GK+T L LA+A
Sbjct: 2 SVRQPLPERLRPTVLEGFVGQTHLTQRIEALLRANRLPSLLLFGPPGCGKSTLALLLAKA 61
Query: 327 ----LLGVSFKDAVLELNASNDRGIDV-VRNKIKMF--AQQKVTLP 443
+L +S +A L+ G+D+ V +++ F AQQ LP
Sbjct: 62 RSANVLRLSAPEAGLQHLRKQLHGVDILVLDELHRFSKAQQDFFLP 107
>UniRef50_Q4MZF5 Cluster: Replication factor C large subunit,
putative; n=1; Theileria parva|Rep: Replication factor C
large subunit, putative - Theileria parva
Length = 1084
Score = 50.4 bits (115), Expect = 3e-05
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Frame = +3
Query: 168 EKYRPQTFDDIVGNEDTVSR----LAVFAKTGNAPNI---IIAGPPGVGKTTTILCLARA 326
EKYRP+ F +++GN ++ R L F K +++GPPG+GKTT
Sbjct: 504 EKYRPKRFSELIGNPRSIQRLKDWLQHFPKDKGKDEFKAALLSGPPGIGKTT-----CAK 558
Query: 327 LLGVSFKDAVLELNASNDRGIDVVRN 404
L+G F V+ELNAS+ R + + N
Sbjct: 559 LVGQFFNYHVIELNASDQRSKNSIEN 584
>UniRef50_Q2TVY2 Cluster: Checkpoint RAD17-RFC complex; n=2;
Aspergillus|Rep: Checkpoint RAD17-RFC complex -
Aspergillus oryzae
Length = 843
Score = 50.4 bits (115), Expect = 3e-05
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Frame = +3
Query: 114 EKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLA-----VFAKTGNAPNIIIAG 278
E P S++ LPW ++Y P D++V ++ VS + FA TG +++ G
Sbjct: 195 ENNDSSPIHSQAHKLPWAQQYSPTNLDELVVHKRKVSDVQSWLRNAFAGTGEHKLLVLRG 254
Query: 279 PPGVGKTTTILCLARAL 329
P G GKTTTI L++ L
Sbjct: 255 PAGSGKTTTINILSQTL 271
>UniRef50_Q4FNB0 Cluster: DNA-directed DNA polymerase gamma/tau
subunit; n=2; Candidatus Pelagibacter ubique|Rep:
DNA-directed DNA polymerase gamma/tau subunit -
Pelagibacter ubique
Length = 557
Score = 50.0 bits (114), Expect = 4e-05
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 21/135 (15%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARAL------ 329
KYRPQTF+D++G + ++ K PN + G G+GKTTT +A++L
Sbjct: 11 KYRPQTFNDLIGQDVVAETISNSIKANKVPNAYLFTGIRGIGKTTTARIVAKSLNCSNGI 70
Query: 330 --------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVI 467
+ S VLE++A++ G+D VR+ I+ F++ T ++KI I
Sbjct: 71 DNLCKEELCENCNAISNSNHIDVLEMDAASKTGVDDVRDLIE-FSRYGPT--TAKYKIFI 127
Query: 468 LDEADSMTDGAQQAL 512
+DE ++ A AL
Sbjct: 128 IDEVHMLSKQAFNAL 142
>UniRef50_A3ISF6 Cluster: DNA-directed DNA polymerase; n=3;
Cyanobacteria|Rep: DNA-directed DNA polymerase -
Cyanothece sp. CCY 0110
Length = 692
Score = 50.0 bits (114), Expect = 4e-05
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 22/140 (15%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL-- 329
P KYRPQTF D+VG E + L+ A AP + GP G GKT++ LA++L
Sbjct: 12 PLHHKYRPQTFADLVGQEAIATTLSNAIASQRIAPAYLFTGPRGTGKTSSARILAKSLNC 71
Query: 330 LGVSFKDA-------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR 452
L V A V+E++A+++ G+D +R I+ V R
Sbjct: 72 LAVEVPTAAPCGQCEVCRAITRGSALDVIEIDAASNTGVDNIREIIERSQFAPVQC---R 128
Query: 453 HKIVILDEADSMTDGAQQAL 512
+K+ ++DE ++ A AL
Sbjct: 129 YKVYVIDECHMLSVAAFNAL 148
>UniRef50_Q74L01 Cluster: DNA polymerase III subunit gamma/tau; n=7;
Lactobacillus|Rep: DNA polymerase III subunit gamma/tau
- Lactobacillus johnsonii
Length = 602
Score = 49.6 bits (113), Expect = 5e-05
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 22/136 (16%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARALLGVSFK 347
K+RP+TFD +VG L K G + + AGP G GKT+ A+AL + +
Sbjct: 9 KWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNCTNLQ 68
Query: 348 DA-------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIV 464
D ++E++A+++ G+D +R+ + KV P G++K+
Sbjct: 69 DGEPCNECENCLAADQGTMNDIIEIDAASNNGVDEIRD-----IRDKVKYAPTQGKYKVY 123
Query: 465 ILDEADSMTDGAQQAL 512
I+DE ++ GA AL
Sbjct: 124 IIDEVHMLSMGAFNAL 139
>UniRef50_Q4L3D4 Cluster: DNA polymerase III gamma and tau subunits;
n=17; Bacilli|Rep: DNA polymerase III gamma and tau
subunits - Staphylococcus haemolyticus (strain JCSC1435)
Length = 571
Score = 49.6 bits (113), Expect = 5e-05
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 22/135 (16%)
Frame = +3
Query: 174 YRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKD 350
+RPQ+F D+VG E L +K + I +GP G GKT+ A+A+ ++ +D
Sbjct: 10 FRPQSFQDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNPQD 69
Query: 351 A-------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVI 467
V+E++A+++ G+D +RN + KV P ++K+ I
Sbjct: 70 GEPCNECAICKGITQGTNGDVIEIDAASNNGVDEIRN-----IRDKVKYAPSESKYKVYI 124
Query: 468 LDEADSMTDGAQQAL 512
+DE +T GA AL
Sbjct: 125 IDEVHMLTTGAFNAL 139
>UniRef50_O48696 Cluster: F3I6.23 protein; n=3; Arabidopsis
thaliana|Rep: F3I6.23 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 525
Score = 49.6 bits (113), Expect = 5e-05
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 7/136 (5%)
Frame = +3
Query: 117 KKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVF---AKTGNAPNIIIAGPPG 287
K+ SSS + P E+ RP+T DD+VG + +S ++ ++ P+I+ GPPG
Sbjct: 88 KRHKLSSSSHRQHQPLSERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRLPSIVFWGPPG 147
Query: 288 VGKTTTILCLARALLGVSFKDAVL----ELNASNDRGIDVVRNKIKMFAQQKVTLPPGRH 455
GKT+ +A++L+ S KD L L+A G+ VR+ ++ + +++ L +
Sbjct: 148 TGKTS----IAKSLIN-SSKDPSLYRFVSLSAVTS-GVKDVRDAVE--SAKRLNLEGRKR 199
Query: 456 KIVILDEADSMTDGAQ 503
++ +DE Q
Sbjct: 200 TVLFMDEVHRFNKSQQ 215
>UniRef50_Q0C7D8 Cluster: Predicted protein; n=1; Aspergillus
terreus NIH2624|Rep: Predicted protein - Aspergillus
terreus (strain NIH 2624)
Length = 816
Score = 49.6 bits (113), Expect = 5e-05
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Frame = +3
Query: 114 EKKQVKPSSSKSTN--LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-----III 272
++++ P S++S + LPW ++Y PQ D++ ++ V+ + + K A N +++
Sbjct: 172 DRRKTSPPSTQSPDGQLPWTQRYPPQDLDELAVHKKKVADVNAWLKDALAGNSRRRLLVL 231
Query: 273 AGPPGVGKTTTILCLARAL 329
GP G GKTTT+ LA++L
Sbjct: 232 RGPAGSGKTTTVSLLAKSL 250
>UniRef50_Q7V9L4 Cluster: DNA polymerase III gamma/tau subunit; n=4;
Prochlorococcus marinus|Rep: DNA polymerase III
gamma/tau subunit - Prochlorococcus marinus
Length = 559
Score = 49.2 bits (112), Expect = 7e-05
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 22/143 (15%)
Frame = +3
Query: 150 TNLPWIEKYRPQTFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILCLARA 326
T P +KYRP+ FDD+VG + V+ L AP + GP G GKT++ LAR+
Sbjct: 4 TYQPLHQKYRPKRFDDLVGQDSIVATLKQALISNRIAPAYLFCGPRGTGKTSSARILARS 63
Query: 327 L---------------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP 443
L +G ++E++A+++ G+D +R I+ + +
Sbjct: 64 LNCQQSEKPTIAPCCQCNLCKEIGKGTALDIIEIDAASNTGVDNIRELIE---RSQFAPV 120
Query: 444 PGRHKIVILDEADSMTDGAQQAL 512
R K+ ++DE ++ A AL
Sbjct: 121 QARWKVYVIDECHMLSTAAFNAL 143
>UniRef50_Q6MH32 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Bdellovibrio bacteriovorus|Rep: DNA polymerase III
gamma and tau subunits - Bdellovibrio bacteriovorus
Length = 621
Score = 49.2 bits (112), Expect = 7e-05
Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 21/135 (15%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARAL------ 329
K+RPQ+F D+VG L+ K G P+ ++ GP G GKT++ LA+AL
Sbjct: 25 KWRPQSFTDVVGQNHITQTLSNALKNGRLPHALLFTGPRGTGKTSSARILAKALRCPNAQ 84
Query: 330 --------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVI 467
G S D V+E++ +++ G+D +R A + G++KI I
Sbjct: 85 NFVPCNDCYSCNEIAGGSSID-VIEIDGASNNGVDAIRELRDTVAFMPSS---GKYKIYI 140
Query: 468 LDEADSMTDGAQQAL 512
+DE ++ A AL
Sbjct: 141 IDEVHMLSTSAFNAL 155
>UniRef50_Q0IE22 Cluster: DNA polymerase III, subunits gamma and
tau; n=13; Cyanobacteria|Rep: DNA polymerase III,
subunits gamma and tau - Synechococcus sp. (strain
CC9311)
Length = 643
Score = 49.2 bits (112), Expect = 7e-05
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 22/140 (15%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLG 335
P KYRPQ FD +VG E + L +G AP + +GP G GKT++ LAR+L
Sbjct: 7 PLHHKYRPQRFDQLVGQEAIAATLGHALTSGRIAPAYLFSGPRGTGKTSSARILARSLNC 66
Query: 336 VSFKDA---------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR 452
+S V+E++A+++ G+D +R+ I+ + + R
Sbjct: 67 LSHDGPTPQPCGTCELCNTIARGTALDVIEIDAASNTGVDNIRDLIE---RSRFAPVQAR 123
Query: 453 HKIVILDEADSMTDGAQQAL 512
K+ ++DE ++ A AL
Sbjct: 124 WKVYVVDECHMLSTAAFNAL 143
>UniRef50_Q7RNS4 Cluster: Drosophila melanogaster BcDNA.LD06837,
putative; n=6; Plasmodium|Rep: Drosophila melanogaster
BcDNA.LD06837, putative - Plasmodium yoelii yoelii
Length = 363
Score = 49.2 bits (112), Expect = 7e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARAL 329
W+EKY P++ D++ ++D +RL + + P+II G PG GK+T I CL + +
Sbjct: 16 WLEKYAPRSLDELNIHKDITTRLKKLSVHNDLPHIIFYGSPGGGKSTRIDCLIKEI 71
>UniRef50_Q7NK69 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Gloeobacter violaceus|Rep: DNA polymerase III gamma
and tau subunits - Gloeobacter violaceus
Length = 632
Score = 48.8 bits (111), Expect = 9e-05
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 20/138 (14%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL-- 329
P KYRPQ F D+VG V+ L K G A + G G GKTTT +A+AL
Sbjct: 5 PLHHKYRPQRFGDVVGQGPIVTTLTNALKAGRIAHAYLFTGSRGTGKTTTARLIAKALNC 64
Query: 330 ---------------LGVSFKDA--VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHK 458
L ++ A V+E++A+++ G+D +R I+ + + R K
Sbjct: 65 IHGPTPDPCGRCEQCLAIATGSALDVIEIDAASNTGVDNIRELIE---RAQFAPVQSRQK 121
Query: 459 IVILDEADSMTDGAQQAL 512
+ ILDE ++ A L
Sbjct: 122 VYILDEVHMLSSAAFNCL 139
>UniRef50_Q6G4V0 Cluster: DNA polymerase III subunit tau; n=6;
Rhizobiales|Rep: DNA polymerase III subunit tau -
Bartonella henselae (Rochalimaea henselae)
Length = 646
Score = 48.8 bits (111), Expect = 9e-05
Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 25/139 (17%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLGVSFK 347
KYRPQ F D++G E V L +TG A ++ G GVGKTTT LARA L K
Sbjct: 16 KYRPQNFSDLIGQEAMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTARILARA-LNYKTK 74
Query: 348 DA------------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRH 455
D V+E++A++ GID +R I+ + V+ R+
Sbjct: 75 DIDQPTTVLNTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVS---ARY 131
Query: 456 KIVILDEADSMTDGAQQAL 512
K+ I+DE ++ A L
Sbjct: 132 KVYIIDEVHMLSTQAFNGL 150
>UniRef50_Q7P6U1 Cluster: DNA polymerase III subunit gamma/tau; n=3;
Fusobacterium nucleatum|Rep: DNA polymerase III subunit
gamma/tau - Fusobacterium nucleatum subsp. vincentii
ATCC 49256
Length = 490
Score = 48.8 bits (111), Expect = 9e-05
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 21/145 (14%)
Frame = +3
Query: 141 SKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCL 317
SK ++ KYRP +F ++ G + V L + K + A + +GP GVGKTT +
Sbjct: 4 SKKMHITLYRKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLI 63
Query: 318 ARALLGVSFKD--------------------AVLELNASNDRGIDVVRNKIKMFAQQKVT 437
A+ + ++ K+ ++E++A+++R ID +R+ + Q V
Sbjct: 64 AKGVNCLNLKENGEPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLKEKINYQPV- 122
Query: 438 LPPGRHKIVILDEADSMTDGAQQAL 512
G K+ I+DEA +T A AL
Sbjct: 123 --EGLKKVYIIDEAHMLTKEAFNAL 145
>UniRef50_A5D6B1 Cluster: DNA polymerase III, gamma/tau subunits;
n=2; Peptococcaceae|Rep: DNA polymerase III, gamma/tau
subunits - Pelotomaculum thermopropionicum SI
Length = 558
Score = 48.8 bits (111), Expect = 9e-05
Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 22/143 (15%)
Frame = +3
Query: 150 TNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARA 326
T L ++RP+TF +I+G E L + G + I G G GKTT LA+A
Sbjct: 2 TYLALYREWRPRTFGEIIGQEHITRTLKNAVEAGRVGHAYIFCGARGTGKTTAAKVLAKA 61
Query: 327 LLGVSFKDA-------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP- 446
L + A V+E++A+++RGID +R+ ++K+ P
Sbjct: 62 LNCTGREGAEPCNRCESCRAVNEGISVDVIEIDAASNRGIDEIRD-----LREKIRFAPA 116
Query: 447 -GRHKIVILDEADSMTDGAQQAL 512
GR+++ I+DE +T A AL
Sbjct: 117 AGRYRVYIIDEVHMLTSEAFNAL 139
>UniRef50_A2A0B1 Cluster: DNA polymerase III subunit gamma/tau; n=1;
Microscilla marina ATCC 23134|Rep: DNA polymerase III
subunit gamma/tau - Microscilla marina ATCC 23134
Length = 575
Score = 48.8 bits (111), Expect = 9e-05
Identities = 45/136 (33%), Positives = 64/136 (47%), Gaps = 23/136 (16%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTT-------TILCLARA 326
KYRP TFD +VG + L K+ A + GP GVGKTT TI CL
Sbjct: 10 KYRPATFDTVVGQSHITTTLKNAIKSNQLAQAFLFCGPRGVGKTTCARILAKTINCLTPT 69
Query: 327 ----LLG-----VSFKDA----VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKI 461
G VSF++ V EL+A++ +D +RN + +V PP G+ K+
Sbjct: 70 EDFEACGTCESCVSFQNQGSMNVYELDAASSNSVDDIRNLV-----DQVRYPPQSGKRKV 124
Query: 462 VILDEADSMTDGAQQA 509
I+DE +++ A A
Sbjct: 125 YIIDEVHMLSNSAFNA 140
>UniRef50_Q54MH9 Cluster: Replication factor C subunit; n=1;
Dictyostelium discoideum AX4|Rep: Replication factor C
subunit - Dictyostelium discoideum AX4
Length = 1401
Score = 48.8 bits (111), Expect = 9e-05
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Frame = +3
Query: 144 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN--APN-------IIIAGPPGVGK 296
K ++ W+EKYRP+ +DIVGN + N AP ++++GPPG+GK
Sbjct: 845 KGHDILWVEKYRPKVIEDIVGNPGIFQEFGKWLDQWNSTAPRDASKKNAVLLSGPPGIGK 904
Query: 297 TTTILCLARALLGVSFKDAVLELNASNDR 383
T+ L + + F+ +ELNAS+ R
Sbjct: 905 TSAALLICKQ---KGFE--AIELNASDAR 928
>UniRef50_A7D2R8 Cluster: AAA ATPase, central domain protein; n=1;
Halorubrum lacusprofundi ATCC 49239|Rep: AAA ATPase,
central domain protein - Halorubrum lacusprofundi ATCC
49239
Length = 540
Score = 48.8 bits (111), Expect = 9e-05
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLARALLG 335
W EKYRP T ++ GN+ A +A++ + + +++ G PGVGKT+ LA +G
Sbjct: 44 WTEKYRPSTLSEVRGNDKARDAFADWARSWDDHHEAVVLHGSPGVGKTSAAHALAND-MG 102
Query: 336 VSFKDAVLELNASNDRGIDVV 398
+ELNAS+ R DV+
Sbjct: 103 WE----TVELNASDQRTADVI 119
>UniRef50_Q9WYX8 Cluster: UPF0189 protein TM_0508; n=4;
Thermotogaceae|Rep: UPF0189 protein TM_0508 - Thermotoga
maritima
Length = 599
Score = 48.8 bits (111), Expect = 9e-05
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTVSRLAVFA---KTGNAPNIIIAGPPGVGKTTTILCLARAL 329
P E RP+ F+D VG + + KTGN + I+ GPPG GKT+ L R
Sbjct: 7 PLSELLRPKDFEDFVGQDHIFGNKGILRRTLKTGNMFSSILYGPPGSGKTSVFSLLKR-- 64
Query: 330 LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQA 509
F V+ L +S G+ ++N +K Q + G+ ++ LDE + Q
Sbjct: 65 ---YFNGEVVYL-SSTVHGVSEIKNVLKRGEQLR---KYGKKLLLFLDEIHRLNKNQQMV 117
Query: 510 LRTH 521
L +H
Sbjct: 118 LVSH 121
>UniRef50_Q6L0P4 Cluster: Replication factor C large subunit; n=1;
Picrophilus torridus|Rep: Replication factor C large
subunit - Picrophilus torridus
Length = 410
Score = 48.8 bits (111), Expect = 9e-05
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-----APNIIIAGPPGVGKTTTILCLA 320
+ W +KYRP +++ D ++ + +A + ++I+ G PG GKTTT +A
Sbjct: 1 MAWADKYRPVDISELIMPSDELNSIIRWADSWRNNEVIKKSLILYGDPGTGKTTTATVIA 60
Query: 321 RALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR--HKIVILDEADSMTD 494
L ++E+NAS++R D ++ M + L R +++++DEAD++ +
Sbjct: 61 NYL-----NVPLIEMNASDERNADSMKRVALMSSLYSDLLSERRIPDRLILIDEADNIFE 115
Query: 495 GAQQALRTHHGAV 533
+G +
Sbjct: 116 SRDPKRGGDYGGI 128
>UniRef50_Q1IQ74 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Acidobacteria bacterium Ellin345|Rep: DNA
polymerase III, subunits gamma and tau - Acidobacteria
bacterium (strain Ellin345)
Length = 632
Score = 48.4 bits (110), Expect = 1e-04
Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 22/136 (16%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL------ 329
KYRPQ F +++G + L + A I +G G+GKTT LA AL
Sbjct: 9 KYRPQKFSEVIGQDHVTRTLKNAIEQQRIAHGYIFSGHRGIGKTTIARILAMALNCQSAD 68
Query: 330 ------LGV--SFKDA-------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIV 464
GV S K+ V+E++A+ +RGID +R +++ A+ + R KI
Sbjct: 69 HPVSEPCGVCDSCKEVKAGQSVDVIEIDAATNRGIDEIR-ELREAARYRPA--RDRFKIY 125
Query: 465 ILDEADSMTDGAQQAL 512
ILDEA +TD A AL
Sbjct: 126 ILDEAHQITDAAFNAL 141
>UniRef50_Q9C587 Cluster: Replication factor C large subunit-like
protein; n=7; Magnoliophyta|Rep: Replication factor C
large subunit-like protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 956
Score = 48.4 bits (110), Expect = 1e-04
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 24/113 (21%)
Frame = +3
Query: 120 KQVKPSSSKS----TNLPWIEKYRPQTFDDIVGNEDTVSRL--------AVFAKTGNAPN 263
K+V P+ K+ T+LPW EKYRP+ ++IVGN+ V++L F TG+
Sbjct: 324 KKVPPAKGKNKIIETSLPWTEKYRPKVPNEIVGNQSLVTQLHNWLSHWHDQFGGTGSKGK 383
Query: 264 ------------IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRG 386
++++G PG+GKTT+ L +LG +E+NAS+ RG
Sbjct: 384 GKKLNDAGSKKAVLLSGTPGIGKTTSAK-LVSQMLGFQ----AVEVNASDSRG 431
>UniRef50_Q6J2Q0 Cluster: Gp44; n=1; Acinetobacter phage 133|Rep:
Gp44 - Acinetobacter phage 133
Length = 319
Score = 48.4 bits (110), Expect = 1e-04
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIII-AGPPGVGKTTTILCLARALL-GVSF 344
KYRP D+ + + L +GN P++I+ + PG GKTT +ARAL GV
Sbjct: 15 KYRPDNIDECILPAADKAILKAIVASGNIPHLILHSDQPGTGKTT----VARALCNGV-- 68
Query: 345 KDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEAD-SMTDGAQQALRT 518
DA + +D ID VR + FA GR K++++DE D + AQ +RT
Sbjct: 69 -DAHMLFVNGSDCKIDFVRGPLTTFASSLSN--DGRPKVIVIDEFDRNGLQDAQLHMRT 124
>UniRef50_A2G4Z2 Cluster: Differentiation specific element binding
protein, putative; n=1; Trichomonas vaginalis G3|Rep:
Differentiation specific element binding protein,
putative - Trichomonas vaginalis G3
Length = 876
Score = 48.4 bits (110), Expect = 1e-04
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Frame = +3
Query: 168 EKYRPQTFDDIVGNEDTVSRLAVFAKTGN---APN-IIIAGPPGVGKTTTILCLARALLG 335
EKYRP+ DIV N + L F + + P I+ GPPG+GK+T A L+
Sbjct: 159 EKYRPRQLSDIVSNYGALKHLVDFFEAYDPYEKPKCAILCGPPGIGKST-----AATLVA 213
Query: 336 VSFKDAVLELNASNDRGIDVVRNKI-KMFAQQKVTLPPGRHKI-VILDEADSMTDGAQQA 509
+ +ELNAS+ R + +F + + G+ +I +I DE D M+ G +
Sbjct: 214 LYCDYHPIELNASDTRSKKSLNETFPDIFDNKAIDAKSGQDQICLIFDEVDGMSAGDRGG 273
Query: 510 LR 515
L+
Sbjct: 274 LQ 275
>UniRef50_UPI00006CAE51 Cluster: ATPase, AAA family protein; n=1;
Tetrahymena thermophila SB210|Rep: ATPase, AAA family
protein - Tetrahymena thermophila SB210
Length = 1242
Score = 48.0 bits (109), Expect = 2e-04
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 22/145 (15%)
Frame = +3
Query: 129 KPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRL---------AVFAKT---GN------ 254
K + S + W KY PQ +D VGNE + +L V K GN
Sbjct: 631 KQNQENSIHSLWTHKYAPQELNDCVGNEAQIKKLENWLVNWENVVVHKQKVQGNWKENPG 690
Query: 255 APNIIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKV 434
+ +I+GPPG+GKT+T+ LA+ + ++E NAS+ R + + I V
Sbjct: 691 SRACLISGPPGIGKTSTVRLLAQ-----KYNMNIIEWNASDVRNKNAIETIINPLKDNTV 745
Query: 435 T----LPPGRHKIVILDEADSMTDG 497
+ I+++DE D M+ G
Sbjct: 746 LNFKHEVSSQRSIILMDEVDGMSSG 770
>UniRef50_Q8EY86 Cluster: DNA polymerase III subunit gamma; n=4;
Leptospira|Rep: DNA polymerase III subunit gamma -
Leptospira interrogans
Length = 503
Score = 48.0 bits (109), Expect = 2e-04
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 20/134 (14%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARAL------ 329
KYRPQ F D++ + + L K+G + I GP GVGKTT LA+ L
Sbjct: 35 KYRPQKFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCQNPI 94
Query: 330 -------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 470
+ VLE++A+++RGI+ +R ++ K G++K+ I+
Sbjct: 95 DNEPCNECNSCSEITRGISSDVLEIDAASNRGIENIR---ELRDNVKFAPMGGKYKVYII 151
Query: 471 DEADSMTDGAQQAL 512
DE +TD + AL
Sbjct: 152 DEVHMLTDQSFNAL 165
>UniRef50_Q67LR0 Cluster: ATP/GTP-binding domain protein; n=21;
Bacteria|Rep: ATP/GTP-binding domain protein -
Symbiobacterium thermophilum
Length = 438
Score = 48.0 bits (109), Expect = 2e-04
Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILCLARAL 329
P + RPQT D+ VG E V L + G+ P+ I+ GPPG GKTT LAR L
Sbjct: 17 PLAARMRPQTLDEFVGQEHLVGPGRFLRRALEAGHLPSCILFGPPGTGKTT----LAR-L 71
Query: 330 LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQA 509
+ + +LNA G+ +R +I A+ ++ G+ +V +DE Q A
Sbjct: 72 MASNVNAHFEQLNAVTS-GVQDIR-RIVDEARARLA-ERGQKTVVFIDEIHRWRKDQQDA 128
Query: 510 LRTH 521
L H
Sbjct: 129 LLPH 132
>UniRef50_Q5FTB4 Cluster: DNA polymerase III subunit gamma/tau; n=6;
Rhodospirillales|Rep: DNA polymerase III subunit
gamma/tau - Gluconobacter oxydans (Gluconobacter
suboxydans)
Length = 652
Score = 48.0 bits (109), Expect = 2e-04
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILCLARAL 329
KYRPQTFDD++G + V L F A ++ G GVGKTTT +ARAL
Sbjct: 44 KYRPQTFDDLIGQDSLVRILRRAFELKRVAHAFMLTGVRGVGKTTTARIIARAL 97
>UniRef50_A4M5U6 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Petrotoga mobilis SJ95|Rep: DNA polymerase
III, subunits gamma and tau - Petrotoga mobilis SJ95
Length = 467
Score = 48.0 bits (109), Expect = 2e-04
Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 21/135 (15%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL------ 329
KYRP+ FD+I+G V K + I +GP G GKTTT LA+ L
Sbjct: 8 KYRPKDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCKDPQ 67
Query: 330 -----------LGV---SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVI 467
+ + SF D V+E++A+++RGID +RN I+ + + G++K+ I
Sbjct: 68 GYNPCNKCENCVSINNNSFLD-VIEMDAASNRGIDEIRN-IRDSSNYRPVY--GKYKVYI 123
Query: 468 LDEADSMTDGAQQAL 512
+DE +T A AL
Sbjct: 124 IDEFHMLTREAFNAL 138
>UniRef50_A5E3H7 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 550
Score = 48.0 bits (109), Expect = 2e-04
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Frame = +3
Query: 132 PSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKT---GNAPN--IIIAGPPGVGK 296
P + +PW+EKY PQ +I N + ++ G P +++ GP G K
Sbjct: 38 PEKLNKSQVPWLEKYAPQNASEICINPTKLQQVRQLLNNMLKGRLPKKLLVLTGPCGSSK 97
Query: 297 TTTILCLARALLGVS-FKDAVLELNASND 380
+TT+ LAR L G F D+++E S +
Sbjct: 98 STTVKLLARELCGGDIFNDSIVEYQESEN 126
>UniRef50_UPI0000D55FC7 Cluster: PREDICTED: similar to Activator 1
140 kDa subunit (Replication factor C large subunit)
(Germline transcription factor 1); n=1; Tribolium
castaneum|Rep: PREDICTED: similar to Activator 1 140 kDa
subunit (Replication factor C large subunit) (Germline
transcription factor 1) - Tribolium castaneum
Length = 985
Score = 41.1 bits (92), Expect(2) = 2e-04
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Frame = +3
Query: 267 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQK----- 431
+++GPPGVGKTTT +A+ LG+ ++E NAS+ R ++ ++ K
Sbjct: 493 LLSGPPGVGKTTTATLVAKE-LGLD----IVEFNASDTRSKKLLHEEVAQLLSTKTIAGY 547
Query: 432 VTLPP--GRHKIVILDEADSM 488
T P R++++++DE D M
Sbjct: 548 ATGQPNVNRNRVLLMDEVDGM 568
Score = 25.8 bits (54), Expect(2) = 2e-04
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 168 EKYRPQTFDDIVGNEDTVSRLA 233
EKY+PQT ++G + S LA
Sbjct: 431 EKYKPQTLRAVIGQQGDSSNLA 452
>UniRef50_Q0C591 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Hyphomonas neptunium ATCC 15444|Rep: DNA
polymerase III, subunits gamma and tau - Hyphomonas
neptunium (strain ATCC 15444)
Length = 578
Score = 47.6 bits (108), Expect = 2e-04
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL 329
KYRP+ F+D++G E V L+ +TG A ++ G GVGKTTT LAR L
Sbjct: 35 KYRPRRFEDLIGQEAMVRTLSNAFETGRIAHGFMLTGVRGVGKTTTARLLARGL 88
>UniRef50_Q9GQW6 Cluster: Replication factor C subunit 1; n=6;
Plasmodium|Rep: Replication factor C subunit 1 -
Plasmodium falciparum
Length = 904
Score = 47.6 bits (108), Expect = 2e-04
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 28/156 (17%)
Frame = +3
Query: 114 EKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRL--------------------- 230
EKK + ++ N W+EKYRP+ +++VGN V +L
Sbjct: 337 EKKDTHNTQNEILNQLWVEKYRPKNLNELVGNNQNVIKLQNWLASWEDVCIKGIKKPAQK 396
Query: 231 ---AVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVR 401
+F NA +++GP G+GKTTT ++ A G + V+E NAS++R V
Sbjct: 397 TFRGIFENV-NARCALLSGPAGIGKTTTAKIVSEA-SGYN----VIEFNASDERNKAAVE 450
Query: 402 NKIKMFAQQKVTLPPGRHKI----VILDEADSMTDG 497
+M + K+ +I+DE D M+ G
Sbjct: 451 KISEMATGGYSIMSLNNRKLTKTCIIMDEVDGMSSG 486
>UniRef50_UPI0000499B2D Cluster: AAA family ATPase; n=1; Entamoeba
histolytica HM-1:IMSS|Rep: AAA family ATPase - Entamoeba
histolytica HM-1:IMSS
Length = 611
Score = 47.2 bits (107), Expect = 3e-04
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Frame = +3
Query: 114 EKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVF---AKTGNAPNIIIAGPP 284
++++ P K +P EK RP+ +DI+G ED ++ F K + I+ GPP
Sbjct: 29 DRQEKSPQEIKQIYIPLAEKQRPKNLEDIIGQEDILAIGTPFNTMIKNDKIQSTILYGPP 88
Query: 285 GVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIV 464
G GKTT ++ + K + ++A++ + D K+ A+ + + G + I+
Sbjct: 89 GCGKTT-----IAGIIKNNSKSTFISMSAASSKKEDF--KKVINDAKHRKRM--GINTIL 139
Query: 465 ILDEADSM 488
LDE S+
Sbjct: 140 FLDEIHSL 147
>UniRef50_Q97FT8 Cluster: Lon-like ATP-dependent protease; n=1;
Clostridium acetobutylicum|Rep: Lon-like ATP-dependent
protease - Clostridium acetobutylicum
Length = 566
Score = 47.2 bits (107), Expect = 3e-04
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = +3
Query: 153 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKT 299
++P E+ RP++FD+I+G ++ + L N ++II GPPGVGKT
Sbjct: 54 SIPLCEESRPKSFDEIIGQKNGIKTLKASICGPNPQHVIIYGPPGVGKT 102
>UniRef50_Q2GDS0 Cluster: Putative DNA polymerase III, gamma/tau
subunit; n=1; Neorickettsia sennetsu str. Miyayama|Rep:
Putative DNA polymerase III, gamma/tau subunit -
Neorickettsia sennetsu (strain Miyayama)
Length = 396
Score = 47.2 bits (107), Expect = 3e-04
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 21/135 (15%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTT-------ILCLAR- 323
KYRP+ D+IVG + V L A A+ A I+++GP G GKTTT +LCL R
Sbjct: 9 KYRPRLLDEIVGQDFLVKCLSASIARDEVAGAILLSGPYGTGKTTTARAVTLSLLCLNRT 68
Query: 324 ------------ALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVI 467
++L S D +LE++A+++ G++ VR I+ A K L ++K I
Sbjct: 69 SALPCLKCDSCISILSGSHPD-ILEIDAASNTGVEDVRMLIE-GALYKPLL--SKYKSYI 124
Query: 468 LDEADSMTDGAQQAL 512
+DE ++ A AL
Sbjct: 125 VDEVHMLSQSAFSAL 139
>UniRef50_O25419 Cluster: DNA polymerase III gamma and tau subunits;
n=4; Helicobacter|Rep: DNA polymerase III gamma and tau
subunits - Helicobacter pylori (Campylobacter pylori)
Length = 578
Score = 47.2 bits (107), Expect = 3e-04
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 20/134 (14%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARALLGVSFK 347
KYRP+ F ++VG E L++ N + +G G GKT++ ARAL+
Sbjct: 7 KYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGP 66
Query: 348 DAV-------------------LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 470
AV +E++ +++RGID VRN I+ Q + GR+KI I+
Sbjct: 67 KAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIE---QTRYKPSFGRYKIFII 123
Query: 471 DEADSMTDGAQQAL 512
DE T A AL
Sbjct: 124 DEVHMFTTEAFNAL 137
>UniRef50_Q0B0W5 Cluster: DNA-directed DNA polymerase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
DNA-directed DNA polymerase - Syntrophomonas wolfei
subsp. wolfei (strain Goettingen)
Length = 499
Score = 47.2 bits (107), Expect = 3e-04
Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 22/135 (16%)
Frame = +3
Query: 174 YRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARALLGVSFKD 350
+RP+ F ++VG E TV+ L + G + + +GP G GKT+ +A+A+ + +
Sbjct: 10 WRPRRFAEVVGQEKTVTALRNAVREGKLSHAYLFSGPRGTGKTSIAKIIAKAVNCENLSE 69
Query: 351 A-------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVI 467
V+E++A+++RGID +R+ ++KV + P G++K+ I
Sbjct: 70 GEPCNQCSSCQDINNGNFMDVIEIDAASNRGIDEIRD-----LREKVRVLPAQGKNKVYI 124
Query: 468 LDEADSMTDGAQQAL 512
+DE +T A AL
Sbjct: 125 IDEVHMLTTEAFNAL 139
>UniRef50_Q59Y48 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 547
Score = 47.2 bits (107), Expect = 3e-04
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Frame = +3
Query: 141 SKSTNLPWIEKYRPQTFDDIVGNEDTVSRL--AV--FAKTGNAPNIIIAGPPGVGKTTTI 308
SK T+L E RP TF+ VG + ++ + A+ F K G P++I GP G+GKTT
Sbjct: 19 SKLTSLSLSEAIRPTTFEQYVGQDHLINPIDGAIRNFIKLGYLPSMIFTGPSGIGKTTLA 78
Query: 309 LCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVI-LDEADS 485
++ G+ F + + D +++ K QK G KIV+ +DE
Sbjct: 79 SVISYE-CGLPFLELSATTMTTMDLKTTIMQKNQKNQKNQK-NQNVGEQKIVLFIDELHR 136
Query: 486 MT 491
+T
Sbjct: 137 LT 138
>UniRef50_O94697 Cluster: Replication factor C subunit 5; n=2;
Ascomycota|Rep: Replication factor C subunit 5 -
Schizosaccharomyces pombe (Fission yeast)
Length = 358
Score = 47.2 bits (107), Expect = 3e-04
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG 335
W+++YRP+T + ++ RL + T P++++ GP G GK T ++ + R L G
Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYG 60
>UniRef50_Q67TJ5 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Symbiobacterium thermophilum|Rep: DNA polymerase
III gamma and tau subunits - Symbiobacterium
thermophilum
Length = 570
Score = 46.8 bits (106), Expect = 4e-04
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 22/142 (15%)
Frame = +3
Query: 153 NLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL 329
+L +YRPQ F ++VG E L G + +++GP G GKTT LA+A+
Sbjct: 3 HLALYREYRPQRFGEVVGQEHITRTLRNAIVQGRLHHAYLLSGPRGTGKTTVARILAKAV 62
Query: 330 LGVSFKDA-------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPG- 449
++ +D ++E++A+++RGID +R+ + KV P
Sbjct: 63 NCLNPQDGEPCNECEACRRITSGEALDLIEIDAASNRGIDEIRD-----LRDKVNFAPVE 117
Query: 450 -RHKIVILDEADSMTDGAQQAL 512
++K+ I+DE +T+ A AL
Sbjct: 118 LKYKVYIIDEVHMLTEPAFNAL 139
>UniRef50_Q18U88 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Desulfitobacterium hafniense|Rep: DNA
polymerase III, subunits gamma and tau -
Desulfitobacterium hafniense (strain DCB-2)
Length = 554
Score = 46.8 bits (106), Expect = 4e-04
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 22/136 (16%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL------ 329
++RP+ F D+VG + L ++ A + +GP G GKTTT LA+AL
Sbjct: 9 EWRPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFSGPRGTGKTTTAKVLAKALNCEHRE 68
Query: 330 -----------LGVSFKDA--VLELNASNDRGIDVVRNKIKMFAQQKVTLPPG--RHKIV 464
L + A V E++A+++RGID +R+ + KV L G ++K+
Sbjct: 69 GVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRD-----LRDKVRLSAGESKYKVY 123
Query: 465 ILDEADSMTDGAQQAL 512
I+DE +T A AL
Sbjct: 124 IIDEVHMLTTEAFNAL 139
>UniRef50_Q117S8 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Trichodesmium erythraeum IMS101|Rep: DNA
polymerase III, subunits gamma and tau - Trichodesmium
erythraeum (strain IMS101)
Length = 695
Score = 46.8 bits (106), Expect = 4e-04
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 22/140 (15%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLG 335
P KYRPQTF D+VG + L T AP + GP G GKT++ LA++L
Sbjct: 5 PLHHKYRPQTFADLVGQDVIAQTLTNAIHTKRIAPAYLFTGPRGTGKTSSARVLAKSLNC 64
Query: 336 VSFKDA---------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR 452
+S+ V+E++A+++ G+D +R I+ V R
Sbjct: 65 LSYDHPTPSPCGTCNVCVGITKGSTLDVIEIDAASNTGVDNIRELIERSQFAPVQC---R 121
Query: 453 HKIVILDEADSMTDGAQQAL 512
+K+ ++DE ++ A AL
Sbjct: 122 YKVYVIDEVHMLSVSAFNAL 141
>UniRef50_A7CST5 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Opitutaceae bacterium TAV2|Rep: DNA polymerase
III, subunits gamma and tau - Opitutaceae bacterium TAV2
Length = 388
Score = 46.8 bits (106), Expect = 4e-04
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL 329
K+RPQTFDD+VG + V L A+ A + GP G GKT+T A+AL
Sbjct: 12 KWRPQTFDDVVGQDHVVRTLKNAIARNRIAHAYLFVGPRGTGKTSTARIFAKAL 65
>UniRef50_A5KSU9 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; candidate division TM7 genomosp. GTL1|Rep: DNA
polymerase III, subunits gamma and tau - candidate
division TM7 genomosp. GTL1
Length = 454
Score = 46.8 bits (106), Expect = 4e-04
Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 10/124 (8%)
Frame = +3
Query: 171 KYRPQTFDDIVGNE---DTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVS 341
KYR +T D++VG + D + + + G+A + GP G GKT+ LA A+ +
Sbjct: 8 KYRSRTLDEVVGQKHITDVLLKALQHKRIGHA--FLFTGPRGTGKTSIARILAHAINDLP 65
Query: 342 FKD-----AVLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKIVILDEADSMTDGA 500
+++ ++E++A+++R ID +R+ ++KV + P K+ I+DE +T +
Sbjct: 66 YENDSLHLDIVEIDAASNRRIDDIRD-----LREKVHIAPTSAPFKVYIIDEVHMLTGES 120
Query: 501 QQAL 512
AL
Sbjct: 121 FNAL 124
>UniRef50_A4XJ39 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Caldicellulosiruptor saccharolyticus DSM
8903|Rep: DNA polymerase III, subunits gamma and tau -
Caldicellulosiruptor saccharolyticus (strain ATCC 43494
/ DSM 8903)
Length = 535
Score = 46.8 bits (106), Expect = 4e-04
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 18/132 (13%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALLGVSFK 347
KYRP+ F+D+V E L K + I GP G GKTTT +ARA+ ++ K
Sbjct: 8 KYRPKVFEDVVAQEHITKTLKNQIKQDKVAHAYIFTGPRGTGKTTTAKIMARAVNCLNPK 67
Query: 348 DA----VLELNAS--NDRGIDVVR---------NKIKMFAQQKVTLPPG--RHKIVILDE 476
D E+ S N++ +DV+ N ++ + +V PP + ++ I+DE
Sbjct: 68 DGNPCNECEVCQSILNEKTLDVLEIDAASNTSVNDVRQI-RDEVRYPPSMCKRRVYIIDE 126
Query: 477 ADSMTDGAQQAL 512
++ GA AL
Sbjct: 127 VHMLSTGAFNAL 138
>UniRef50_A3EPW1 Cluster: Putative DNA polymerase III, gamma/tau
subunits; n=1; Leptospirillum sp. Group II UBA|Rep:
Putative DNA polymerase III, gamma/tau subunits -
Leptospirillum sp. Group II UBA
Length = 540
Score = 46.8 bits (106), Expect = 4e-04
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 147 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLAR 323
ST L K+RPQ F D+VG E V L +G P ++ +G GVGKTT LA+
Sbjct: 2 STILSLARKWRPQLFSDLVGQEFVVRALTGTLGSGKLPQALLFSGDRGVGKTTVARILAK 61
Query: 324 AL 329
A+
Sbjct: 62 AI 63
>UniRef50_Q10NN1 Cluster: ATPase, AAA family protein, expressed;
n=12; Magnoliophyta|Rep: ATPase, AAA family protein,
expressed - Oryza sativa subsp. japonica (Rice)
Length = 1002
Score = 46.8 bits (106), Expect = 4e-04
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Frame = +3
Query: 207 NEDTVSRLAVFAKTGNAPN---IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASN 377
+ED S T NAP +++ GPPG+GKTT + +A G V+E+NAS+
Sbjct: 336 SEDLTSSFNKRPTTDNAPEQKVLLLCGPPGLGKTT-LAHVAAKHCGYH----VVEINASD 390
Query: 378 DRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEAD-SMTDG 497
DR + KI Q + + K +++DE D ++ DG
Sbjct: 391 DRSASSIEPKILDVIQMNSIMSDSKPKCLVIDEIDGALGDG 431
>UniRef50_P40151 Cluster: DNA-dependent ATPase MGS1; n=6;
Saccharomycetales|Rep: DNA-dependent ATPase MGS1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 587
Score = 46.8 bits (106), Expect = 4e-04
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Frame = +3
Query: 144 KSTNLPWIEKYRPQTFDDIVGNEDTVSR----LAVFAKTGNAPNIIIAGPPGVGKTTTIL 311
K ++LP EK RP+ D VG + +S+ L + K G P++I+ GPPGVGKT+
Sbjct: 129 KISHLPLSEKLRPKELRDYVGQQHILSQDNGTLFKYIKQGTIPSMILWGPPGVGKTSLAR 188
Query: 312 CLAR 323
L +
Sbjct: 189 LLTK 192
>UniRef50_Q8YMK1 Cluster: DNA polymerase III gamma and tau subunits;
n=3; Nostocaceae|Rep: DNA polymerase III gamma and tau
subunits - Anabaena sp. (strain PCC 7120)
Length = 655
Score = 46.4 bits (105), Expect = 5e-04
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 22/141 (15%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL- 329
+P KYRP+ F ++VG E + L +T AP + GP G GKT++ LA++L
Sbjct: 4 VPLHHKYRPKNFAELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLN 63
Query: 330 -----------LGV---------SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPG 449
GV + V+E++A+++ G+D +R I+ V
Sbjct: 64 CLNSDKPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQC--- 120
Query: 450 RHKIVILDEADSMTDGAQQAL 512
R+K+ ++DE ++ A AL
Sbjct: 121 RYKVYVIDECHMLSSAAFNAL 141
>UniRef50_Q4AHZ6 Cluster: DNA-directed DNA polymerase; n=1;
Chlorobium phaeobacteroides BS1|Rep: DNA-directed DNA
polymerase - Chlorobium phaeobacteroides BS1
Length = 613
Score = 46.4 bits (105), Expect = 5e-04
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 23/136 (16%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLGVSFK 347
KYRP TF +VG + S L K + A + GP GVGKTT LA+ + +
Sbjct: 10 KYRPMTFKQVVGQQSITSTLQNAIKNNHLAQAFLFTGPRGVGKTTCARILAKTINCTNLN 69
Query: 348 DA--------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKI 461
+ + EL+A+++ +D +R+ + ++V +PP G++K+
Sbjct: 70 EQLEPCDQCESCRSFNSSSSFNIHELDAASNNSVDDIRSLV-----EQVRIPPQVGKYKV 124
Query: 462 VILDEADSMTDGAQQA 509
I+DE ++ A A
Sbjct: 125 YIIDEVHMLSQAAFNA 140
>UniRef50_Q0ASK9 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Maricaulis maris MCS10|Rep: DNA polymerase
III, subunits gamma and tau - Maricaulis maris (strain
MCS10)
Length = 606
Score = 46.4 bits (105), Expect = 5e-04
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL 329
KYRP TF+D++G + V L FA A ++ G GVGKTTT +ARAL
Sbjct: 38 KYRPDTFEDLIGQDAMVRTLTNAFAAGRIAHAYMLTGVRGVGKTTTARLIARAL 91
>UniRef50_A6LMU3 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Thermosipho melanesiensis BI429|Rep: DNA
polymerase III, subunits gamma and tau - Thermosipho
melanesiensis BI429
Length = 460
Score = 46.4 bits (105), Expect = 5e-04
Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 21/135 (15%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARAL------ 329
KYRP+ F ++VG K + I AGP G GKTT LA++L
Sbjct: 7 KYRPKKFLELVGQSHVKKLFVNSLKNKEISHAYIFAGPRGTGKTTVARILAKSLNCENPQ 66
Query: 330 -----------LGV---SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVI 467
+ + +F D VLEL+A+++RGID +R KI+ G++K+ I
Sbjct: 67 EIEPCNMCNACISIDKGNFMD-VLELDAASNRGIDEIR-KIRETVNYHTA--QGKYKVYI 122
Query: 468 LDEADSMTDGAQQAL 512
+DEA +T A AL
Sbjct: 123 IDEAHMLTKEAFNAL 137
>UniRef50_Q96S08 Cluster: Protein CTF18 homolog; n=22; cellular
organisms|Rep: Protein CTF18 homolog - Homo sapiens
(Human)
Length = 1184
Score = 46.4 bits (105), Expect = 5e-04
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +3
Query: 267 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTL-P 443
++ GPPG+GKTT +AR G S V+E+NAS+DR +V R +I+ Q + L
Sbjct: 566 LLCGPPGLGKTTLAHVIARHA-GYS----VVEMNASDDRSPEVFRTRIEAATQMESVLGA 620
Query: 444 PGRHKIVILDEAD 482
G+ +++DE D
Sbjct: 621 GGKPNCLVIDEID 633
>UniRef50_UPI0000E4A039 Cluster: PREDICTED: hypothetical protein;
n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 672
Score = 46.0 bits (104), Expect = 7e-04
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Frame = +3
Query: 132 PSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAK---TGNAPNIIIAGPPGVGKTT 302
PS + P E+ RP T D ++G + + GN P++I GPPG GKT+
Sbjct: 262 PSQPRPDFRPLAERMRPYTMDTLIGQNKALGATGTLRRLLDVGNIPSMIFWGPPGCGKTS 321
Query: 303 TILCLAR-ALLGVSFKDAVLELNASN----DRGIDVVRNKIKMFAQQKV 434
+AR A + + + SN +++ RN+ +M+ ++ +
Sbjct: 322 LANVIARQAKVRNTHRFITFSATTSNVSDVKSAVEIARNEQRMYRRKTI 370
>UniRef50_Q8EUW0 Cluster: DNA polymerase III gamma-tau subunits;
n=1; Mycoplasma penetrans|Rep: DNA polymerase III
gamma-tau subunits - Mycoplasma penetrans
Length = 804
Score = 46.0 bits (104), Expect = 7e-04
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 20/138 (14%)
Frame = +3
Query: 147 STNLPWIEKYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLAR 323
+ + + KYRP +F++I+G + + L+ K + I +GP GVGKT+ ++
Sbjct: 2 NNKIAFYRKYRPNSFNEIIGQKFIIKTLSNSIIKNKQSHAYIFSGPKGVGKTSIAKIFSK 61
Query: 324 ALLGVSFKDA-------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP 446
L ++ KD ++EL+A+++ G+ VRN I L
Sbjct: 62 VLNCLNLKDGDCCNNCNNCNLINQNQAVDIVELDAASNNGVGEVRNIIDTINYLPSVL-- 119
Query: 447 GRHKIVILDEADSMTDGA 500
++K+ I+DEA +++ A
Sbjct: 120 -KYKVYIIDEAHMLSNAA 136
>UniRef50_Q6F0D9 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Mesoplasma florum|Rep: DNA polymerase III gamma and
tau subunits - Mesoplasma florum (Acholeplasma florum)
Length = 631
Score = 46.0 bits (104), Expect = 7e-04
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 21/135 (15%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLGVSFK 347
KYRP F DI G+++ V L K + + + AG G GKT+ LA+++ ++ K
Sbjct: 10 KYRPSNFGDIAGHQNVVEILKNELKNNKISHSFLFAGQRGTGKTSIARILAKSVNCLNIK 69
Query: 348 DA-------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLP-PGRHKIVI 467
D ++E++A+++ G+D +R +IK +LP G++KI I
Sbjct: 70 DGLACEVCESCIASNEQRNPDIIEMDAASNNGVDEIR-EIK---NNINSLPFIGKYKIYI 125
Query: 468 LDEADSMTDGAQQAL 512
+DE +T A AL
Sbjct: 126 IDEVHMLTKAAFNAL 140
>UniRef50_Q6ABA1 Cluster: DNA polymerase III subunit gamma; n=2;
cellular organisms|Rep: DNA polymerase III subunit gamma
- Propionibacterium acnes
Length = 957
Score = 46.0 bits (104), Expect = 7e-04
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Frame = +3
Query: 132 PSSSKSTNLPWI-----EKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGV 290
P S+ +LP + +YRP+TFD+++G + + L A N N + +GP G
Sbjct: 95 PDSNPDDDLPELPLALYRRYRPETFDEVIGEDHVIEPLKR-AILNNRVNHAYLFSGPRGC 153
Query: 291 GKTTTILCLARAL 329
GKTTT LARAL
Sbjct: 154 GKTTTARILARAL 166
>UniRef50_A5P451 Cluster: DNA-directed DNA polymerase; n=1;
Methylobacterium sp. 4-46|Rep: DNA-directed DNA
polymerase - Methylobacterium sp. 4-46
Length = 699
Score = 46.0 bits (104), Expect = 7e-04
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARAL 329
W EKYRP+ F D+VG + V+ + +++ GP G GKTT L AL
Sbjct: 10 WDEKYRPRVFGDLVGQDGAVAWCKERVRERQVKTLLLHGPSGCGKTTIARVLGNAL 65
>UniRef50_A4E9Y5 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 825
Score = 46.0 bits (104), Expect = 7e-04
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARALL 332
KYRP TFD +VG + VS L G + + GP G GKTT LA+ALL
Sbjct: 7 KYRPLTFDSVVGQQHIVSTLEHAITEGRLSHAYLFCGPRGTGKTTMARILAKALL 61
>UniRef50_A1ISN1 Cluster: DNA polymerase III tau and gamma chains;
n=4; Neisseria|Rep: DNA polymerase III tau and gamma
chains - Neisseria meningitidis serogroup A
Length = 709
Score = 46.0 bits (104), Expect = 7e-04
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 20/134 (14%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARAL------ 329
K+RP+TF D+VG E V L G + ++ G GVGKTT LA++L
Sbjct: 9 KWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQ 68
Query: 330 ----LGVSFK----DA-----VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 470
GV DA +LE++A+++ GID +R ++ AQ T G++K+ I+
Sbjct: 69 HGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLEN-AQYAPT--AGKYKVYII 125
Query: 471 DEADSMTDGAQQAL 512
DE ++ A A+
Sbjct: 126 DEVHMLSKSAFNAM 139
>UniRef50_Q01F52 Cluster: Replication factor C 110 kDa subunit; n=3;
Ostreococcus|Rep: Replication factor C 110 kDa subunit -
Ostreococcus tauri
Length = 553
Score = 46.0 bits (104), Expect = 7e-04
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 12/87 (13%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLA------------VFAKTGNAPNIIIAGPPGVGKTTT 305
W +++ P+T D+VGN ++ L V K + I+I+GPPGVGKTTT
Sbjct: 66 WTDEFSPRTVTDLVGNSSAINVLRSWLLQWSARKFNVQLKGQDRKCILISGPPGVGKTTT 125
Query: 306 ILCLARALLGVSFKDAVLELNASNDRG 386
+ L + LG+ L +NAS+ RG
Sbjct: 126 AVLLCKE-LGLQ----TLNINASDSRG 147
>UniRef50_A2X8Q4 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 996
Score = 46.0 bits (104), Expect = 7e-04
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = +3
Query: 144 KSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLAR 323
++ L W +KYRP+T + + + +L T P+II GPPG GK++ L R
Sbjct: 681 ENIRLFWADKYRPRTLGGFTCHREQIEQLKQLVSTEFCPHIIFKGPPGSGKSS----LCR 736
Query: 324 ALLGVSFKDAVLELN 368
A++ F D+ L ++
Sbjct: 737 AVVTEIFGDSSLNVS 751
>UniRef50_A0RY55 Cluster: Replication factor C/ATPase involved in
DNA replication; n=2; Thermoprotei|Rep: Replication
factor C/ATPase involved in DNA replication -
Cenarchaeum symbiosum
Length = 386
Score = 46.0 bits (104), Expect = 7e-04
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFA---KTGNAPNIIIAGPPGVGKTTTILCLARALL 332
W EK+RP+ +VGNE+ + L+ + K G P +++ GPPG GK TT+ LA
Sbjct: 3 WSEKHRPRDIPSMVGNEEARAALSGWFSKWKKGTKP-VLLVGPPGTGK-TTVANLAAKAH 60
Query: 333 GVSFKDAVLELNASNDR 383
G V+ LNAS+ R
Sbjct: 61 GYD----VISLNASDAR 73
>UniRef50_Q3F084 Cluster: DNA polymerase III subunit gamma/tau; n=1;
Bacillus thuringiensis serovar israelensis ATCC
35646|Rep: DNA polymerase III subunit gamma/tau -
Bacillus thuringiensis serovar israelensis ATCC 35646
Length = 431
Score = 34.7 bits (76), Expect(2) = 8e-04
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARALL 332
+YRP++ D+ GNED + + N P I++ G G GKT+ +A+ L
Sbjct: 17 RYRPKSMDEYKGNEDLKKAVFSWLNNINKPQAILLKGTTGGGKTSMARIVAKEYL 71
Score = 30.3 bits (65), Expect(2) = 8e-04
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 360 ELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQAL 512
E+NAS D G+ + + ++ + + P G KI ILDE ++ AQ +L
Sbjct: 108 EINASKDSGLTAINSLLE---EAQYPNPDGSWKIYILDECHRISIPAQNSL 155
>UniRef50_Q8ZSE1 Cluster: DNA polymerase III gamma and tau subunits;
n=2; Nostocaceae|Rep: DNA polymerase III gamma and tau
subunits - Anabaena sp. (strain PCC 7120)
Length = 429
Score = 45.6 bits (103), Expect = 9e-04
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 22/136 (16%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL------ 329
KYRPQ +++G E V L A AP + +GP G GKT+T +A++L
Sbjct: 8 KYRPQILSEVIGQEHIVRTLINAIAFQKIAPAYLFSGPKGTGKTSTARIIAKSLNCQSSN 67
Query: 330 -------------LGVSFKDA--VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIV 464
G++ + V EL+A+++ G++++R ++ + + R KI
Sbjct: 68 EPTTKPCGECNSCKGITASSSVDVTELDAASNSGVELIR---ELISTTQFAPVESRFKIF 124
Query: 465 ILDEADSMTDGAQQAL 512
I+DE +++ + QAL
Sbjct: 125 IIDECHALSSQSWQAL 140
>UniRef50_Q6KIL7 Cluster: DNA polymerase III subunit gamma and tau;
n=1; Mycoplasma mobile|Rep: DNA polymerase III subunit
gamma and tau - Mycoplasma mobile
Length = 720
Score = 45.6 bits (103), Expect = 9e-04
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 21/135 (15%)
Frame = +3
Query: 171 KYRPQTFDDIVGNE---DTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARAL---- 329
KYRP+ FD+I G + T+ + F K +A + +GP G GKT+ A AL
Sbjct: 9 KYRPKNFDEIKGQDHIVTTLKNILNFDKLSHA--YLFSGPRGTGKTSVAKIFAAALNCEH 66
Query: 330 ---------LGVSFKD---AVLELNASNDRGIDVVRNKIKMFAQQKVTLPPG--RHKIVI 467
L V D ++E++A+++ G+D +R ++KV P ++K+ I
Sbjct: 67 EIQKEKICNLCVENLDNNLDIIEIDAASNNGVDEIRE-----LREKVKYSPSQYKYKVYI 121
Query: 468 LDEADSMTDGAQQAL 512
+DEA +T A AL
Sbjct: 122 IDEAHMLTKSAFNAL 136
>UniRef50_Q84FP3 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Arthrospira platensis|Rep: DNA polymerase III gamma
and tau subunits - Spirulina platensis
Length = 768
Score = 45.6 bits (103), Expect = 9e-04
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL 329
P KYRPQTF D+VG E L ++ AP + GP G GKT++ LA++L
Sbjct: 5 PLHHKYRPQTFADLVGQEAIAQTLTNAIRSRRIAPAYLFTGPRGTGKTSSARILAKSL 62
>UniRef50_Q3CFZ5 Cluster: AAA ATPase, central region; n=3;
Bacteria|Rep: AAA ATPase, central region -
Thermoanaerobacter ethanolicus ATCC 33223
Length = 443
Score = 45.6 bits (103), Expect = 9e-04
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Frame = +3
Query: 153 NLPWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILCLAR 323
N P ++ RP+T D+ VG E + + L + N ++I+ GPPGVGKTT + +A
Sbjct: 16 NKPLADRMRPKTLDEFVGQEHLLGKGKLLRELIEKDNITSMILWGPPGVGKTTLAMIIAN 75
Query: 324 ALLG--VSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG 497
++F AVL GI ++ ++ A+ ++ G +V +DE
Sbjct: 76 MTNSKFITF-SAVLS-------GIKEIK---EIMAKAELDAMYGTRTVVFIDEIHRFNKA 124
Query: 498 AQQALRTH 521
Q A H
Sbjct: 125 QQDAFLPH 132
>UniRef50_Q022F8 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Solibacter usitatus Ellin6076|Rep: DNA
polymerase III, subunits gamma and tau - Solibacter
usitatus (strain Ellin6076)
Length = 568
Score = 45.6 bits (103), Expect = 9e-04
Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 20/134 (14%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL------ 329
KYRPQ+F D++ E + L A+ A I +G G GKTT LAR L
Sbjct: 8 KYRPQSFADVICQEHVKTTLENAIAQHRIAHGYIFSGQRGTGKTTIARILARCLNCVQGP 67
Query: 330 ----LGV--SFKDA-------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 470
GV S K+ V+E++A+++RGI+ +R + Q R+KI I+
Sbjct: 68 TATPCGVCASCKEISEGGTVDVIEIDAASNRGINEMRELRENVRYQPAR---DRYKIFII 124
Query: 471 DEADSMTDGAQQAL 512
DEA +T+ A AL
Sbjct: 125 DEAHQITNEAFNAL 138
>UniRef50_A6QCT9 Cluster: ATPase, AAA family; n=22;
Epsilonproteobacteria|Rep: ATPase, AAA family -
Sulfurovum sp. (strain NBC37-1)
Length = 393
Score = 45.6 bits (103), Expect = 9e-04
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNA---PNIIIAGPPGVGKTTTILCLARALLGVS 341
KYRP+T D++VG + A K A P+I + GPPG GKTT LAR ++
Sbjct: 7 KYRPKTLDEMVGQRHLLGEEAPLRKLIEADALPHIFLYGPPGCGKTT----LAR-IIATQ 61
Query: 342 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQAL 512
E+NA+ + ID +R K +A + ++ +DE ++ Q+ L
Sbjct: 62 LGRPFYEMNATTLK-IDDLRKIFKEYANAL------QKPLIFIDEVHRLSKNQQEVL 111
>UniRef50_A3TI73 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Janibacter sp. HTCC2649|Rep: DNA polymerase III
subunits gamma and tau - Janibacter sp. HTCC2649
Length = 799
Score = 45.6 bits (103), Expect = 9e-04
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARAL 329
+YRP+TF D++G E L +TG + + +GP G GKTT+ LAR L
Sbjct: 11 RYRPETFVDVIGQEHVTEPLMQALRTGRVNHAYLFSGPRGCGKTTSARILARCL 64
>UniRef50_A1A0Y3 Cluster: Putative uncharacterized protein; n=2;
Bifidobacterium adolescentis|Rep: Putative
uncharacterized protein - Bifidobacterium adolescentis
(strain ATCC 15703 / DSM 20083)
Length = 466
Score = 45.6 bits (103), Expect = 9e-04
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTVS------RLAVFAKTGN--APN-IIIAGPPGVGKTTTIL 311
P + RP + DD+VG + RLA A G+ AP+ II+ GPPGVGKTT
Sbjct: 18 PLAVRMRPASIDDVVGQSRVLGEGSPLRRLANPASKGSLTAPSSIILFGPPGVGKTTLAY 77
Query: 312 CLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT 491
+A+ G F+ EL+A G+ VR+ +K ++ V+ G+ ++ +DE +
Sbjct: 78 IVAKQ-SGRVFE----ELSAVTS-GVKDVRDVLKRAHERLVS--EGKETVLFIDEVHRFS 129
Query: 492 DGAQQAL 512
Q AL
Sbjct: 130 KSQQDAL 136
>UniRef50_Q96S55 Cluster: ATPase WRNIP1; n=31; Eumetazoa|Rep: ATPase
WRNIP1 - Homo sapiens (Human)
Length = 665
Score = 45.6 bits (103), Expect = 9e-04
Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILCLARAL 329
P + RP T D G V + L +T P++I+ GPPG GKTT LA +
Sbjct: 226 PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTT----LAHII 281
Query: 330 LGVSFKDAV--LELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQ 503
S K ++ + L+A+N + D VR+ IK +K R I+ +DE Q
Sbjct: 282 ASNSKKHSIRFVTLSATNAKTND-VRDVIKQAQNEKSFFK--RKTILFIDEIHRFNKSQQ 338
Query: 504 QALRTH 521
H
Sbjct: 339 DTFLPH 344
>UniRef50_UPI000050FCE9 Cluster: COG2812: DNA polymerase III,
gamma/tau subunits; n=1; Brevibacterium linens BL2|Rep:
COG2812: DNA polymerase III, gamma/tau subunits -
Brevibacterium linens BL2
Length = 1148
Score = 45.2 bits (102), Expect = 0.001
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 23/137 (16%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNI-IIAGPPGVGKTTTILCLARALLGV--- 338
+YRP+TFD+++G E L + G + + +GP G GKTT+ LAR L
Sbjct: 8 RYRPETFDEVIGQEHVTDPLKAAIERGRINHAYLFSGPRGCGKTTSARILARCLNCAKGP 67
Query: 339 ---------SFKDA---------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP-GRHKI 461
S +D V+E++A++ G+D R+ ++ + P R+K+
Sbjct: 68 TPVPCGECPSCEDLANGGPGSLDVVEIDAASHNGVDDARD----LRERAIYAPARDRYKV 123
Query: 462 VILDEADSMTDGAQQAL 512
ILDEA +T AL
Sbjct: 124 FILDEAHMVTSQGFNAL 140
>UniRef50_UPI0000F31775 Cluster: Cell cycle checkpoint protein RAD17
(hRad17) (RF-C/activator 1 homolog).; n=1; Bos
taurus|Rep: Cell cycle checkpoint protein RAD17 (hRad17)
(RF-C/activator 1 homolog). - Bos Taurus
Length = 611
Score = 45.2 bits (102), Expect = 0.001
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Frame = +3
Query: 147 STNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTG---NAPN-----IIIAGPPGVGKTT 302
S N PW++KY+P+T ++ ++ + + + K P ++I GPPG GKTT
Sbjct: 86 SENEPWVDKYKPETQHELAVHKKKIEEVETWLKAEVLERQPKQGGSILLITGPPGCGKTT 145
Query: 303 TILCLAR 323
TI LA+
Sbjct: 146 TIKILAK 152
>UniRef50_Q8R5R3 Cluster: Uncharacterized ATPase related to the
helicase subunit of the Holliday junction resolvase;
n=2; Bacteria|Rep: Uncharacterized ATPase related to the
helicase subunit of the Holliday junction resolvase -
Thermoanaerobacter tengcongensis
Length = 440
Score = 45.2 bits (102), Expect = 0.001
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Frame = +3
Query: 153 NLPWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILCLAR 323
N P ++ RP+T D+ VG E + + L + + ++I+ GPPGVGKTT + +A
Sbjct: 15 NRPLADRMRPRTLDEFVGQEHILGKGKALRELIEKDSITSMILWGPPGVGKTTLAMIIAN 74
Query: 324 ALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQ 503
+ F + L+ GI ++ ++ AQ + G+ +V +DE Q
Sbjct: 75 -MTNSKFVNFSAVLS-----GIKEIK---EIMAQAERDAMYGQRTVVFIDEIHRFNKAQQ 125
Query: 504 QALRTH 521
A H
Sbjct: 126 DAFLPH 131
>UniRef50_Q74BH4 Cluster: ATPase, AAA family; n=2;
Deltaproteobacteria|Rep: ATPase, AAA family - Geobacter
sulfurreducens
Length = 440
Score = 45.2 bits (102), Expect = 0.001
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Frame = +3
Query: 153 NLPWIEKYRPQTFDDIVGNEDTVSR---LAVFAKTGNAPNIIIAGPPGVGKTTTILCLAR 323
N P E+ RP+T D+ VG E + L ++ ++I GPPG GKTT +A
Sbjct: 15 NAPLAERMRPRTLDEYVGQEHLLGEGKLLRRLIESDTLTSLIFWGPPGSGKTTLARVIAN 74
Query: 324 ALLG-VSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGA 500
A F A+L GI +R +K ++K GR+ I+ +DE
Sbjct: 75 ATKSHFIFFSAILS-------GIKEIREIVKEAEEEKKY--RGRNTILFVDEIHRFNKSQ 125
Query: 501 QQA 509
Q A
Sbjct: 126 QDA 128
>UniRef50_Q4HGU7 Cluster: DNA polymerase III gamma and tau subunits;
n=3; Campylobacter|Rep: DNA polymerase III gamma and tau
subunits - Campylobacter coli RM2228
Length = 518
Score = 45.2 bits (102), Expect = 0.001
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 21/135 (15%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGN--APNIIIAGPPGVGKTTTILCLARALL---G 335
KYRP+TFD+++G + TVS +A N A + +G G GKT++ +RAL+ G
Sbjct: 8 KYRPKTFDELIG-QKTVSTSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCDNG 66
Query: 336 VSFKDA----------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVI 467
S ++E++A+++RG++ ++ I+ Q K T R KI I
Sbjct: 67 PSDTPCGTCKQCLAALEGKHIDIIEMDAASNRGLEDIQALIE---QTKYTPSMARFKIFI 123
Query: 468 LDEADSMTDGAQQAL 512
+DE +T A AL
Sbjct: 124 IDEVHMLTPQAANAL 138
>UniRef50_Q1MPV7 Cluster: DNA polymerase III, gamma/tau subunits;
n=1; Lawsonia intracellularis PHE/MN1-00|Rep: DNA
polymerase III, gamma/tau subunits - Lawsonia
intracellularis (strain PHE/MN1-00)
Length = 574
Score = 45.2 bits (102), Expect = 0.001
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 22/136 (16%)
Frame = +3
Query: 171 KYRPQTFDDIVGNE---DTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARAL---- 329
+YRPQ+F ++VG E +SR A +K P +++G GVGKTT A+AL
Sbjct: 9 RYRPQSFKEVVGQEIVKKILSRAAAESKV--VPAYLLSGTRGVGKTTIARIFAKALNCQQ 66
Query: 330 ---------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIV 464
+ V+E++ +++RG+D R + A + GR+K+
Sbjct: 67 APTAEPCNTCEQCKRITKGIHVDVVEIDGASNRGVDDARRLRESIAYAPM---EGRYKVF 123
Query: 465 ILDEADSMTDGAQQAL 512
I+DEA +T + AL
Sbjct: 124 IIDEAHMLTRESFNAL 139
>UniRef50_A3V6X7 Cluster: Putative uncharacterized protein; n=1;
Loktanella vestfoldensis SKA53|Rep: Putative
uncharacterized protein - Loktanella vestfoldensis SKA53
Length = 232
Score = 45.2 bits (102), Expect = 0.001
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Frame = +3
Query: 156 LPWIEKYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLAR--- 323
+ ++E++RP++ D+V + TV+ + +A +++ G PG GK+ + +A+
Sbjct: 1 MTFVERHRPRSVQDLVFADPTVAAIIDRYAYRRPTKPLLLYGAPGTGKSEALRLIAQTQF 60
Query: 324 ALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQ 503
A G+ +D L A D+ I NKI AQ ++ P G I+++DE D D
Sbjct: 61 AQAGLEIEDFTLN-GAEYDKAI---FNKILNMAQIQM-WPRGTPAIIVIDEIDEFEDKLP 115
Query: 504 QALRT 518
RT
Sbjct: 116 GKTRT 120
>UniRef50_Q6FYP6 Cluster: Holliday junction ATP-dependent DNA
helicase ruvB; n=305; root|Rep: Holliday junction
ATP-dependent DNA helicase ruvB - Bartonella quintana
(Rochalimaea quintana)
Length = 361
Score = 45.2 bits (102), Expect = 0.001
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = +3
Query: 177 RPQTFDDIVGNEDTVSRLAVFAKTGNA-----PNIIIAGPPGVGKTTTILCLARALLGVS 341
RPQ DD +G E + L +F + A +++ GPPG+GKTT +A+ LGV+
Sbjct: 21 RPQVLDDFIGQEAARANLKIFIEAAKARQEALDHVLFVGPPGLGKTTLSQIMAKE-LGVN 79
Query: 342 FK 347
F+
Sbjct: 80 FR 81
>UniRef50_Q5UQE8 Cluster: Putative replication factor C small
subunit L478; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L478 -
Mimivirus
Length = 370
Score = 45.2 bits (102), Expect = 0.001
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARAL 329
+ EKYRP+ D + N D + +L A + P+III+GP G GK T + L L
Sbjct: 3 FFEKYRPKKPSDFLFNTDVLRQLKYLASNEDVPHIIISGPSGSGKKTLVKFLLEFL 58
>UniRef50_UPI00015B60A5 Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 1769
Score = 35.9 bits (79), Expect(2) = 0.001
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +3
Query: 114 EKKQVKPSSSKSTNL---PWIEKYRPQTFDDIVGNEDTVSRL 230
EKK ++ S L PW +KY+P T ++VGNE+ +L
Sbjct: 558 EKKNLRKSCDALDELLYSPWTDKYKPNTTTEVVGNEEAAIKL 599
Score = 28.3 bits (60), Expect(2) = 0.001
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 267 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDR 383
I+ GP G GKT ++ +A L +K VLE+NAS+ R
Sbjct: 639 ILIGPHGSGKTASVYAVAHEL---GYK--VLEVNASSKR 672
>UniRef50_Q97CY0 Cluster: Lon-like ATP-dependent protease; n=8;
Clostridiales|Rep: Lon-like ATP-dependent protease -
Clostridium acetobutylicum
Length = 634
Score = 44.8 bits (101), Expect = 0.002
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +3
Query: 177 RPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTT 302
RPQTF +IVG E + L + +II+ GPPGVGKTT
Sbjct: 168 RPQTFSEIVGQERAIKALVSKLASPYPQHIILYGPPGVGKTT 209
>UniRef50_A5FRM9 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Dehalococcoides|Rep: DNA polymerase III,
subunits gamma and tau - Dehalococcoides sp. BAV1
Length = 570
Score = 44.8 bits (101), Expect = 0.002
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 21/135 (15%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL------ 329
K+RPQT D+VG E L +G A + GP G GKT+T LA+A+
Sbjct: 12 KWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQ 71
Query: 330 ----------LGVSFKDA----VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVI 467
+ +S + ++E++A+++ G+D +R ++K Q +L +K+ I
Sbjct: 72 GKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIR-ELKEKVQYSPSL--ANYKVYI 128
Query: 468 LDEADSMTDGAQQAL 512
+DE +++ A AL
Sbjct: 129 IDEVHMLSNSASNAL 143
>UniRef50_A3ZPF5 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Blastopirellula marina DSM 3645|Rep: DNA polymerase
III gamma and tau subunits - Blastopirellula marina DSM
3645
Length = 618
Score = 44.8 bits (101), Expect = 0.002
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 20/151 (13%)
Frame = +3
Query: 120 KQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGK 296
+ V+PS + + +YRPQ+F+++VG L + G + + G GVGK
Sbjct: 7 EHVEPSHANDQYVVVARRYRPQSFEELVGQSQVAQALKNAIERGRVGHAYLFTGARGVGK 66
Query: 297 TTTILCLARAL-------------------LGVSFKDAVLELNASNDRGIDVVRNKIKMF 419
T++ LA+AL + V VLE++ +++RGI+ +R ++
Sbjct: 67 TSSARILAKALNCQRGPSATPCNECDICRSVTVGEDVDVLEIDGASNRGIEEIR---QLR 123
Query: 420 AQQKVTLPPGRHKIVILDEADSMTDGAQQAL 512
+ + R KI I+DE T A AL
Sbjct: 124 SNVNIRPSRARFKIYIIDEVHMFTKEAFNAL 154
>UniRef50_A1V9U7 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Desulfovibrio|Rep: DNA polymerase III,
subunits gamma and tau - Desulfovibrio vulgaris subsp.
vulgaris (strain DP4)
Length = 622
Score = 44.8 bits (101), Expect = 0.002
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 20/134 (14%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL------ 329
+YRPQTF ++ G E + L+ A+ AP + +G GVGKTT A+AL
Sbjct: 9 RYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCATAP 68
Query: 330 -------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 470
+ V+E++ +++RGID + + + GR+K+ I+
Sbjct: 69 TGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPM---EGRYKVFII 125
Query: 471 DEADSMTDGAQQAL 512
DEA +T A AL
Sbjct: 126 DEAHMLTREAFNAL 139
>UniRef50_Q5KCB2 Cluster: Sister chromatid cohesion-related protein,
putative; n=2; Filobasidiella neoformans|Rep: Sister
chromatid cohesion-related protein, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 892
Score = 44.8 bits (101), Expect = 0.002
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +3
Query: 264 IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTL- 440
++++GPPG GKTT +AR ++ +LE+NAS+DR V+ +I+ +L
Sbjct: 339 LLLSGPPGYGKTTLASIVAR---HAGYR--ILEINASDDRSYQTVQTRIRNAVDAGTSLG 393
Query: 441 PPGRHKIVILDEADSMTDG 497
G+ V++DE D G
Sbjct: 394 AEGKPTCVVIDEIDGAGGG 412
>UniRef50_A7TRM5 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 757
Score = 32.7 bits (71), Expect(2) = 0.002
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 138 SSKSTNLPWIEKYRPQTFDDIVGNEDTVSRL 230
+S S N W+EK++P F +VGNE T R+
Sbjct: 96 TSISDNSLWVEKWKPTKFIHLVGNEHTNRRI 126
Score = 31.1 bits (67), Expect(2) = 0.002
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +3
Query: 237 FAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKI 410
F + N ++I GPPG+GKT+ +A+ G S + E+NAS++R ++ KI
Sbjct: 165 FFQRPNKKILLIHGPPGIGKTSISHIIAKQ-QGYS----ITEINASDERSGLQLKEKI 217
>UniRef50_UPI00015B6046 Cluster: PREDICTED: similar to werner
helicase interacting protein; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to werner helicase
interacting protein - Nasonia vitripennis
Length = 462
Score = 44.4 bits (100), Expect = 0.002
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Frame = +3
Query: 117 KKQVKPS-SSKSTNLPWIEKYRPQTFDDIVGNEDTV---SRLAVFAKTGNAPNIIIAGPP 284
K Q K + +K ++ P EK RP D VG + + L + G P++I+ GPP
Sbjct: 53 KDQTKQTFGNKKSHAPLAEKMRPNELSDYVGQSHLIGPKTLLHDLLRNGEIPSMILWGPP 112
Query: 285 GVGKTTTILCLARALLGVS-FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKI 461
G GKT+ + + + +S ++L+A+ I+ VR K + + GR +
Sbjct: 113 GCGKTSLVNVIMQESKKLSDIPVKFIKLSATTS-SINDVR---KAVTEAENQAKQGRRTV 168
Query: 462 VILDE 476
V +DE
Sbjct: 169 VFMDE 173
>UniRef50_UPI00015B50FB Cluster: PREDICTED: similar to conserved
hypothetical protein; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to conserved hypothetical protein -
Nasonia vitripennis
Length = 913
Score = 44.4 bits (100), Expect = 0.002
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Frame = +3
Query: 267 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPP 446
++ GPPG+GKTT AR G + ++ELNAS+DRG + R + Q + +
Sbjct: 331 LLTGPPGLGKTTLAHVAARH-AGYN----IVELNASDDRGPEAFREALLASTQMRALIDQ 385
Query: 447 GRH-KIVILDEAD-SMTDGAQQALRTHHG 527
R +ILDE D + T + L+ HG
Sbjct: 386 DRRPNCLILDEIDGAPTASIELLLKFIHG 414
>UniRef50_Q8A7B5 Cluster: DNA polymerase III subunit gamma/tau; n=6;
Bacteroidales|Rep: DNA polymerase III subunit gamma/tau
- Bacteroides thetaiotaomicron
Length = 619
Score = 44.4 bits (100), Expect = 0.002
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 23/136 (16%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTT-------TILCLARA 326
KYRP TF+ +VG + L A A + GP GVGKTT TI C+
Sbjct: 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMTPT 69
Query: 327 LLG---------VSFKDA----VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKI 461
G V+F + + EL+A+++ +D +R + ++V +PP G++K+
Sbjct: 70 TDGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLV-----EQVRIPPQIGKYKV 124
Query: 462 VILDEADSMTDGAQQA 509
I+DE ++ A A
Sbjct: 125 YIIDEVHMLSASAFNA 140
>UniRef50_A7M2L2 Cluster: Putative uncharacterized protein; n=2;
Bacteroides|Rep: Putative uncharacterized protein -
Bacteroides ovatus ATCC 8483
Length = 621
Score = 44.4 bits (100), Expect = 0.002
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 23/136 (16%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTT-------TILCLARA 326
KYRP TF+ +VG + L A A + GP GVGKTT TI C+
Sbjct: 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMTPT 69
Query: 327 LLG---------VSFKDA----VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKI 461
G V+F + + EL+A+++ +D +R + ++V +PP G++K+
Sbjct: 70 ADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLV-----EQVRIPPQIGKYKV 124
Query: 462 VILDEADSMTDGAQQA 509
I+DE ++ A A
Sbjct: 125 YIIDEVHMLSASAFNA 140
>UniRef50_A5V2B2 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Sphingomonas wittichii RW1|Rep: DNA polymerase
III, subunits gamma and tau - Sphingomonas wittichii RW1
Length = 582
Score = 44.4 bits (100), Expect = 0.002
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARAL 329
KYRPQ F++++G + V+ LA + G A ++ G GVGKT+T +A+AL
Sbjct: 14 KYRPQNFNELIGQDAMVTTLANAIRRGRLAHAFLLTGVRGVGKTSTARLIAKAL 67
>UniRef50_Q8DT16 Cluster: DNA polymerase III, gamma/tau subunit;
n=44; Streptococcus|Rep: DNA polymerase III, gamma/tau
subunit - Streptococcus mutans
Length = 558
Score = 44.0 bits (99), Expect = 0.003
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 25/139 (17%)
Frame = +3
Query: 171 KYRPQTFDDIVGNE---DTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARA----- 326
KYR QTFD++VG E T+ + K +A + +GP G GKT+ A+A
Sbjct: 8 KYRSQTFDEMVGQEVVAKTLKQAVASKKISHA--YLFSGPRGTGKTSAAKIFAKAMNCPH 65
Query: 327 ---------------LLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGR--H 455
+ S +D V+E++A+++ G+D +R + K T P R +
Sbjct: 66 QADGEPCNNCDICHDITNGSLED-VIEIDAASNNGVDEIRE-----IRDKSTYAPSRATY 119
Query: 456 KIVILDEADSMTDGAQQAL 512
K+ I+DE ++ GA AL
Sbjct: 120 KVYIIDEVHMLSTGAFNAL 138
>UniRef50_Q5P9F0 Cluster: DNA polymerase III gamma subunit; n=2;
Anaplasma|Rep: DNA polymerase III gamma subunit -
Anaplasma marginale (strain St. Maries)
Length = 474
Score = 44.0 bits (99), Expect = 0.003
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 22/136 (16%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTT----TILCLARALLG 335
KYRP++FDD+VG + V L G+ + I++ G GVGKTT LCL + G
Sbjct: 6 KYRPRSFDDLVGQDVLVRILRNAFTIGSLSSPILMVGASGVGKTTCARIVSLCL-NCVNG 64
Query: 336 ------------VSFKDA----VLELNASNDRGIDVVRNKIKMFAQQKVTLP-PGRHKIV 464
VS K++ V+E++A+++ G+D I++ + LP R+K+
Sbjct: 65 PTPDPCGTCHECVSIKNSTNPDVIEMDAASNTGVD----DIRVLLENSSYLPTSSRYKVY 120
Query: 465 ILDEADSMTDGAQQAL 512
I+DE ++ A AL
Sbjct: 121 IIDEVHMLSISAFNAL 136
>UniRef50_A6NYA1 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 381
Score = 44.0 bits (99), Expect = 0.003
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Frame = +3
Query: 177 RPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARALLG------ 335
+P +FDDIVG+++ + L G P II G G+GK++ LA L+G
Sbjct: 4 KPTSFDDIVGHKNLIEFLRDHLSKGTLPQFIIFEGDEGLGKSSFAKLLALELMGRDPQVL 63
Query: 336 ------VSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG 497
++VL N S + G D + ++ A + L K++ILDEA M++
Sbjct: 64 KRVIQENKSTESVLLYNMSINGGKDTAK---EVEANLSLGLSGLDRKVIILDEAHDMSEA 120
Query: 498 AQQ 506
AQ+
Sbjct: 121 AQE 123
>UniRef50_A2E870 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 346
Score = 44.0 bits (99), Expect = 0.003
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARAL 329
WI+++RP DD+ + L + + + P+++ GPPG GK T +L R L
Sbjct: 5 WIDQHRPHNLDDLTIQSNANELLKSISGSFDFPHLLFCGPPGSGKKTRVLAFLRKL 60
>UniRef50_Q6BUL9 Cluster: Similarities with CA0979|IPF19713 Candida
albicans; n=1; Debaryomyces hansenii|Rep: Similarities
with CA0979|IPF19713 Candida albicans - Debaryomyces
hansenii (Yeast) (Torulaspora hansenii)
Length = 842
Score = 44.0 bits (99), Expect = 0.003
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Frame = +3
Query: 153 NLPWIEKYRPQTFDDIVGNEDTVSR----LAVFAKTGNAPNIIIAGPPGVGKTTTILCLA 320
N+P E RP++ ++++G ++ + F + G P++I+ GPPGVGKT+ LA
Sbjct: 155 NIPLFEVIRPKSLNEVIGQTHLINNHNGTIKNFIRLGYLPSMILHGPPGVGKTSIASILA 214
Query: 321 R 323
+
Sbjct: 215 Q 215
>UniRef50_UPI0000E87FCE Cluster: DNA-directed DNA polymerase; n=1;
Methylophilales bacterium HTCC2181|Rep: DNA-directed DNA
polymerase - Methylophilales bacterium HTCC2181
Length = 544
Score = 43.6 bits (98), Expect = 0.003
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 20/134 (14%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARAL---LGV 338
K+RP++FD ++G E V +A + + G G+GKTT LA++L G+
Sbjct: 9 KWRPKSFDTLIGQESAVQAIANALDQNRLHHAYLFNGTRGIGKTTIARILAKSLNCEQGI 68
Query: 339 SFKDA----------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 470
S K ++EL+A+++ G+D N I + + GR K+ I+
Sbjct: 69 SSKPCLTCSACQEIDVGRYVDLIELDAASNTGVD---NMIDLLENAQYAPSSGRFKVYII 125
Query: 471 DEADSMTDGAQQAL 512
DE ++ A A+
Sbjct: 126 DEVHMLSKSAFNAM 139
>UniRef50_Q6NU40 Cluster: MGC81266 protein; n=3; Eumetazoa|Rep:
MGC81266 protein - Xenopus laevis (African clawed frog)
Length = 1000
Score = 43.6 bits (98), Expect = 0.003
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 267 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTL-P 443
++ GPPG+GKTT +AR G + V+E+NAS+DR + R +I+ Q K L
Sbjct: 393 LLCGPPGLGKTTLAHVIARH-AGYN----VVEMNASDDRSPEAFRTRIEAATQMKSVLGV 447
Query: 444 PGRHKIVILDEAD 482
R +I+DE D
Sbjct: 448 DERPNCLIIDEID 460
>UniRef50_Q4T303 Cluster: Chromosome 18 SCAF10147, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 18
SCAF10147, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 724
Score = 43.6 bits (98), Expect = 0.003
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Frame = +3
Query: 267 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPP 446
+++GPPG+GKTT +A+ G + V+E+NAS+DR +V + +I Q K L
Sbjct: 108 LLSGPPGLGKTTLAHIIAKHA-GYN----VVEINASDDRSAEVFQKRIDTATQMKSVLGV 162
Query: 447 G-RHKIVILDEAD-SMTDGAQQALRTHHGAVFQY-NSFCIS 560
+ +I+DE D + T + TH +Y NSF S
Sbjct: 163 NEKPNCLIIDEIDGAPTVISGHKSTTHKNNRIKYVNSFSFS 203
>UniRef50_Q7NXL6 Cluster: DNA polymerase subunits gamma and tau;
n=1; Chromobacterium violaceum|Rep: DNA polymerase
subunits gamma and tau - Chromobacterium violaceum
Length = 639
Score = 43.6 bits (98), Expect = 0.003
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 20/134 (14%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARAL---LGV 338
K+RP+ F D+VG E V L+ K + ++ G GVGKTT LA++L G
Sbjct: 9 KWRPKRFADLVGQEHVVRALSNALKEQRLHHAYLLTGTRGVGKTTIARILAKSLNCETGT 68
Query: 339 SFKDA----------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 470
+ + +LE++A+++ GID +R ++ AQ T+ GR K+ I+
Sbjct: 69 TAEPCGECQACRQIDSGRFVDLLEIDAASNTGIDNIREVLEN-AQYAPTM--GRFKVYII 125
Query: 471 DEADSMTDGAQQAL 512
DE ++ A A+
Sbjct: 126 DEVHMLSKSAFNAM 139
>UniRef50_Q2J818 Cluster: AAA ATPase, central region; n=5;
Actinomycetales|Rep: AAA ATPase, central region -
Frankia sp. (strain CcI3)
Length = 519
Score = 43.6 bits (98), Expect = 0.003
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Frame = +3
Query: 159 PWIEKYRPQTFDDIVGNEDTV---SRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARAL 329
P + RP+T D++VG + S L + G ++++ GPPG GKTT ++RA
Sbjct: 52 PLAARLRPRTLDEVVGQRHLLGPGSPLRRLVEGGATTSVVLWGPPGTGKTTLAHIVSRA- 110
Query: 330 LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQA 509
G F+ EL+A G+ VR I + T G ++ +DE T Q A
Sbjct: 111 TGRRFR----ELSAVT-AGVKDVRAVIDEARETLST--SGARTVLFIDEVHRFTRTQQDA 163
Query: 510 L 512
L
Sbjct: 164 L 164
>UniRef50_Q1GV06 Cluster: DNA polymerase III, subunits gamma and
tau; n=6; Sphingomonadales|Rep: DNA polymerase III,
subunits gamma and tau - Sphingopyxis alaskensis
(Sphingomonas alaskensis)
Length = 565
Score = 43.6 bits (98), Expect = 0.003
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 132 PSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTI 308
P++S KYRPQTF +++G + V L A+ A ++ G GVGKT+T
Sbjct: 22 PAASSGPYRVLARKYRPQTFAELIGQDAMVKTLGNAIARDRLAHAFLMTGVRGVGKTSTA 81
Query: 309 LCLARAL 329
+A+AL
Sbjct: 82 RLIAKAL 88
>UniRef50_A6NU34 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 596
Score = 43.6 bits (98), Expect = 0.003
Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN-IIIAGPPGVGKTTTILCLARAL------ 329
K+RP++FDD+VG L TG + + G G GKTT LARA+
Sbjct: 8 KWRPRSFDDVVGQSHITDTLKRQVATGRLSHAYLFTGTRGTGKTTCAKILARAVNCEHPV 67
Query: 330 -----------LGV---SFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPG-RHKIV 464
LG+ S D VLEL+A+++ G+D VR + V P R ++
Sbjct: 68 DGNPCNQCPSCLGIENGSILD-VLELDAASNNGVDQVR----ALRDEAVYTPAAVRKRVY 122
Query: 465 ILDEADSMTDGAQQAL 512
I+DE ++ A AL
Sbjct: 123 IVDEVHMLSTAAFNAL 138
>UniRef50_A5UTH5 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Roseiflexus|Rep: DNA polymerase III, subunits
gamma and tau - Roseiflexus sp. RS-1
Length = 599
Score = 43.6 bits (98), Expect = 0.003
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL 329
+YR QTFD+++G E V L A+ A + GP GVGKTT LA+A+
Sbjct: 9 RYRSQTFDELIGQEHVVRTLRNAIAEGRVAHAYLFTGPRGVGKTTVARLLAKAV 62
>UniRef50_A0UY99 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Firmicutes|Rep: DNA polymerase III, subunits
gamma and tau - Clostridium cellulolyticum H10
Length = 280
Score = 43.6 bits (98), Expect = 0.003
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 21/135 (15%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLAVFAKTGN-APNIIIAGPPGVGKTTTILCLARALLGVSFK 347
K+RP F+D+V E V + K+G A + G G GKTT ARA+ ++ K
Sbjct: 9 KWRPLVFEDVVEQEHVVRTIKNTVKSGRIAHAYLFCGTRGTGKTTMAKIFARAINCINPK 68
Query: 348 DA-------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLP-PGRHKIVI 467
D V+E++A+++ +D VR + V P R+K+ I
Sbjct: 69 DGNPCNECEVCRGILDESILDVVEIDAASNNSVDNVRE----IRDEVVYAPSQARYKVYI 124
Query: 468 LDEADSMTDGAQQAL 512
+DE ++ GA AL
Sbjct: 125 IDEVHMLSSGAFNAL 139
>UniRef50_Q927D7 Cluster: DnaX protein; n=17; Bacillales|Rep: DnaX
protein - Listeria innocua
Length = 579
Score = 43.2 bits (97), Expect = 0.005
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 24/137 (17%)
Frame = +3
Query: 174 YRPQTFDDIVGNE---DTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLGVSF 344
+RPQ+F D+VG E T+ V KT +A + +GP G GKT+ A+A+
Sbjct: 10 FRPQSFQDVVGQEHVTKTLKNAIVQNKTSHA--YLFSGPRGTGKTSAAKIFAKAINCEHG 67
Query: 345 KDA-------------------VLELNASNDRGIDVVRNKIKMFAQQKVTLPP--GRHKI 461
D VLE++A+++ G++ +R+ ++KV P ++K+
Sbjct: 68 HDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRD-----IREKVKYAPTVAKYKV 122
Query: 462 VILDEADSMTDGAQQAL 512
I+DE ++ GA AL
Sbjct: 123 YIIDEVHMLSTGAFNAL 139
>UniRef50_Q2LYB8 Cluster: DNA polymerase III subunit gamma/tau; n=1;
Syntrophus aciditrophicus SB|Rep: DNA polymerase III
subunit gamma/tau - Syntrophus aciditrophicus (strain
SB)
Length = 588
Score = 43.2 bits (97), Expect = 0.005
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 20/134 (14%)
Frame = +3
Query: 171 KYRPQTFDDIVGNEDTVSRLA-VFAKTGNAPNIIIAGPPGVGKTTTILCLARAL------ 329
K+RPQ F+D+VG + V L + A + +GP GVGKT+ LA+A+
Sbjct: 9 KWRPQVFEDVVGQQHVVQTLKNAIRQERIAHAFLFSGPRGVGKTSIARILAKAINCEQGP 68
Query: 330 -------------LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVIL 470
+ V E++ +++RGID +R + V+ R+K+ I+
Sbjct: 69 AGTPCNVCTNCREITEGISMDVREIDGASNRGIDEIRELRERIRFLPVSC---RYKVYII 125
Query: 471 DEADSMTDGAQQAL 512
DE +T A AL
Sbjct: 126 DEVHMLTREAFNAL 139
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 496,916,469
Number of Sequences: 1657284
Number of extensions: 9014003
Number of successful extensions: 41102
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 38838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40684
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40404161459
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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