Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11e05
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 195 4e-51
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 129 3e-31
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 124 1e-29
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 47 2e-06
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 40 4e-04
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 39 5e-04
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 35 0.010
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 34 0.017
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 33 0.040
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 31 0.093
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 31 0.093
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 31 0.093
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 31 0.16
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 30 0.28
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 30 0.28
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 29 0.37
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.65
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 29 0.65
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 28 0.87
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 28 1.1
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 1.5
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 27 2.0
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 27 2.0
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.0
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 27 2.6
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 27 2.6
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 27 2.6
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 27 2.6
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 27 2.6
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc... 26 3.5
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 26 3.5
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar... 26 4.6
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 4.6
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 6.1
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 25 6.1
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 25 8.1
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 25 8.1
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 8.1
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 25 8.1
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 195 bits (475), Expect = 4e-51
Identities = 89/127 (70%), Positives = 109/127 (85%)
Frame = +3
Query: 135 SSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILC 314
++S + LPW+EKYRP DDIVGNE+T+ RL V AK GN P+++I+G PG+GKTT+ILC
Sbjct: 14 NNSVAYELPWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILC 73
Query: 315 LARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD 494
LA ALLG ++K+ VLELNAS++RGIDVVRN+IK FAQ+KV LPPGRHKI+ILDEADSMT
Sbjct: 74 LAHALLGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDEADSMTA 133
Query: 495 GAQQALR 515
GAQQALR
Sbjct: 134 GAQQALR 140
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 517 RTMELYSSTTRFALAANNSEK 579
RTME+YS+TTRFALA N S K
Sbjct: 141 RTMEIYSNTTRFALACNQSNK 161
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 129 bits (312), Expect = 3e-31
Identities = 65/142 (45%), Positives = 92/142 (64%)
Frame = +3
Query: 132 PSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTIL 311
P S+ST LPW+EKYRP +D+V ++D +S L F + P+++ GPPG GKT+TIL
Sbjct: 16 PLGSEST-LPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTIL 74
Query: 312 CLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT 491
AR + G ++++ ++ELNAS+DRGID VR +IK FA + + K++ILDEAD+MT
Sbjct: 75 ACARKIYGPNYRNQLMELNASDDRGIDAVREQIKNFASTR-QIFASTFKMIILDEADAMT 133
Query: 492 DGAQQALRTHHGAVFQYNSFCI 557
AQ ALR + FCI
Sbjct: 134 LAAQNALRRVIEKYTKNVRFCI 155
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 124 bits (299), Expect = 1e-29
Identities = 68/155 (43%), Positives = 91/155 (58%), Gaps = 6/155 (3%)
Frame = +3
Query: 111 PEKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGV 290
P K+ + + KS +PW+E YRP+T D + E TV L + N P+++ G PG
Sbjct: 6 PRNKKTEQEAKKS--IPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGT 63
Query: 291 GKTTTILCLARALLGVS-FKDAVLELNASNDRGIDVVRNKIKMFAQQKVT-----LPPGR 452
GKT+TIL L+R L G K VLELNAS++RGI ++R K+K FA+ VT P
Sbjct: 64 GKTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTNKVDGYPCPP 123
Query: 453 HKIVILDEADSMTDGAQQALRTHHGAVFQYNSFCI 557
KI+ILDEADSMT AQ ALR + + FC+
Sbjct: 124 FKIIILDEADSMTQDAQAALRRTMESYARITRFCL 158
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 47.2 bits (107), Expect = 2e-06
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG 335
W+++YRP+T + ++ RL + T P++++ GP G GK T ++ + R L G
Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYG 60
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 517 RTMELYSSTTRFALAANNSEK 579
RTME YS+ R L AN++ K
Sbjct: 149 RTMEKYSNNIRLILIANSTSK 169
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 39.5 bits (88), Expect = 4e-04
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 28/140 (20%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAK--------TGNAPN---------IIIAGPPGV 290
W KY P + DI GN+ V +L + + N P ++++GPPG+
Sbjct: 361 WTSKYAPTSLKDICGNKGVVQKLQKWLQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGI 420
Query: 291 GKTTTILCLARALLGVSFKDAVLELNASNDR----------GIDVVRNKIKMFAQQKVTL 440
GKTT +A+ L G VLELNAS+ R G+ ++ F + +
Sbjct: 421 GKTTAAHLVAK-LEGYD----VLELNASDTRSKRLLDEQLFGVTDSQSLAGYFGTKANPV 475
Query: 441 PPGRHKIV-ILDEADSMTDG 497
+ ++V I+DE D M+ G
Sbjct: 476 DMAKSRLVLIMDEIDGMSSG 495
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 39.1 bits (87), Expect = 5e-04
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +3
Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLARAL 329
W EKY PQ D+ ++ +S + + T + + ++I GP G GK+T + LA+ L
Sbjct: 72 WFEKYIPQKAADLAVHKSKISAIKQWMLTDSLESRLLLICGPSGCGKSTAVQVLAKEL 129
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 34.7 bits (76), Expect = 0.010
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 168 EKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332
E R D ++G ED + R N ++ G PGVGKT+ LAR ++
Sbjct: 173 ELARNGQLDPVIGREDEIRRTIRVLSRRTKNNPVLIGEPGVGKTSIAEGLARRII 227
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 33.9 bits (74), Expect = 0.017
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 231 AVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332
A++A + N +I GPPG GKT TIL + A+L
Sbjct: 1278 AIYASSVNDGFTLIQGPPGTGKTKTILGMIGAVL 1311
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 32.7 bits (71), Expect = 0.040
Identities = 27/77 (35%), Positives = 37/77 (48%)
Frame = +3
Query: 267 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPP 446
+I G PG GKTTTI L R+LL K + L + +D + K+K V L
Sbjct: 952 LILGMPGTGKTTTISSLIRSLLA---KKKKILLTSFTHLAVDNILIKLKGCDSTIVRL-G 1007
Query: 447 GRHKIVILDEADSMTDG 497
HKI L + +T+G
Sbjct: 1008 SPHKIHPLVKEFCLTEG 1024
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 31.5 bits (68), Expect = 0.093
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 231 AVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332
A+ N +I GPPG GKT TI+ + ALL
Sbjct: 1137 AIMCALDNNGFTLIQGPPGTGKTKTIIGIISALL 1170
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 31.5 bits (68), Expect = 0.093
Identities = 24/73 (32%), Positives = 34/73 (46%)
Frame = +3
Query: 264 IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP 443
+++ G G GKTT +A +K VLE+NAS+DR V K+ L
Sbjct: 419 MMLTGLAGAGKTTLAHVIAHQ---AGYK--VLEINASDDRTAHTVHEKVSSAISNHSAL- 472
Query: 444 PGRHKIVILDEAD 482
+ VI+DE D
Sbjct: 473 SSQPTCVIVDEID 485
Score = 30.3 bits (65), Expect = 0.21
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 129 KPSSSKSTNLPWIEKYRPQTFDDIVGNE 212
KP S K W++ YRPQ F D++G+E
Sbjct: 346 KPQSQKL----WVDTYRPQLFRDLLGDE 369
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 31.5 bits (68), Expect = 0.093
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = +3
Query: 234 VFAKTGNAP--NIIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNK 407
V+ TG P +++ GPPG GKT LA LGV F S G K
Sbjct: 199 VYQYTGIHPPRGVLLHGPPGCGKTMLANALANE-LGVPFISISAPSIVSGMSGES--EKK 255
Query: 408 IKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 515
++ ++ +L P ++ +DE D++T + A R
Sbjct: 256 VREVFEEAKSLAP---CLMFIDEIDAVTPKRESAQR 288
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 30.7 bits (66), Expect = 0.16
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 192 DDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332
D ++G E+ + R N + GP GVGKT + LA ++
Sbjct: 111 DPVIGREEEIQRTIQILSRRTKNNPALVGPAGVGKTAIMEGLASRII 157
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 29.9 bits (64), Expect = 0.28
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +3
Query: 258 PNIIIAGPPGVGKTT 302
PNIII G PG GKTT
Sbjct: 9 PNIIICGTPGTGKTT 23
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 29.9 bits (64), Expect = 0.28
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 234 VFAKTGNAP--NIIIAGPPGVGKTTTILCLARALLGVSFKDAV 356
+F + G P +++ GPPG GKT +A A LGV+F V
Sbjct: 157 LFLRVGIKPPKGVLLYGPPGTGKTLLARAVA-ASLGVNFLKVV 198
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 29.5 bits (63), Expect = 0.37
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 267 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASND 380
++ GPPG GK+T + + L + ++ L+ +ND
Sbjct: 6 VVVGPPGSGKSTYCFGMYQLLSAIGRSSIIVNLDPAND 43
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.7 bits (61), Expect = 0.65
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 264 IIIAGPPGVGKTTTILCLAR 323
I++ G PGVGKT+ I LAR
Sbjct: 1562 ILLEGSPGVGKTSLITALAR 1581
Score = 27.1 bits (57), Expect = 2.0
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +3
Query: 219 VSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG 335
+ +LA +T N P +++ G G GKTTTI LA LLG
Sbjct: 457 LEQLAAGVQT-NEP-LLLVGETGTGKTTTIQLLA-GLLG 492
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 28.7 bits (61), Expect = 0.65
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -1
Query: 467 YHYFMSTRWQS--NLLLRKHFYLIPDDIY 387
Y ++STRW LLLR +Y P DIY
Sbjct: 197 YTEYVSTRWYRAPELLLRDSYYSFPVDIY 225
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 28.3 bits (60), Expect = 0.87
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = +3
Query: 198 IVGNEDTVSRLAVFAKT----GNAPNIIIAGPPGVGKTTTI-LCLARALLGVSFKDAVLE 362
+VG+ D ++L + + G ++II GP G GK+ + L+RA ++ K V+
Sbjct: 552 LVGHMDEQTKLYQWVRQTIVLGEGNSVIIVGPRGSGKSVLVDDILSRAAQEINEKSYVVR 611
Query: 363 LNAS 374
LN +
Sbjct: 612 LNGT 615
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 255 APNIIIAGPPGVGKTTTILCLARALLGV 338
+P +I G G GKTT I CL A G+
Sbjct: 27 SPLTLIVGQNGSGKTTIIECLKYATTGI 54
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +3
Query: 258 PNIIIA--GPPGVGKTTTILCLAR 323
P +I+A GPPG GK+T I L R
Sbjct: 73 PPVIVAVMGPPGTGKSTLIKSLVR 96
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 2.0
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Frame = +3
Query: 132 PSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAV-----------FAKTGNAP--NIII 272
P S + +E+ T+ D+ G ++ + RL F K G P I++
Sbjct: 159 PKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIML 218
Query: 273 AGPPGVGKTTTILCLARAL 329
GPPG GKT LC ARA+
Sbjct: 219 YGPPGTGKT---LC-ARAV 233
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 27.1 bits (57), Expect = 2.0
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +3
Query: 264 IIIAGPPGVGKTTTILCLA----RALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQK 431
I++ GPPG GK+ +A +S D V + ++R +VR +M +QK
Sbjct: 165 ILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESER---LVRQLFEMAREQK 221
Query: 432 VTLPPGRHKIVILDEADSM 488
+ I+ +DE DS+
Sbjct: 222 PS-------IIFIDEIDSL 233
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.1 bits (57), Expect = 2.0
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Frame = +3
Query: 198 IVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNA 371
++ DTV R A F N +I GPPG GK+ +L R+ V ++
Sbjct: 2493 VIPTLDTV-RYAEFLNFSLTKNRCVIFCGPPGSGKSMLMLGTLRSRQDVEVIALNFSIST 2551
Query: 372 SNDRGIDVVRNKIKMFAQQKVTL--PPGRHKIVIL 470
S+ + + + +T+ P K+++L
Sbjct: 2552 SSKSVVSFLEQSTVYYRSTGMTIMCPKNHEKVLVL 2586
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 26.6 bits (56), Expect = 2.6
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 267 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTL-P 443
+I GPPG GKT T++ + + L V +L ASN +D + +++ V L
Sbjct: 229 LIHGPPGTGKTHTLVEIIQQL--VLRNKRILVCGASN-LAVDNIVDRLSSSGIPMVRLGH 285
Query: 444 PGRHKIVILDEA 479
P R ILD +
Sbjct: 286 PARLLPSILDHS 297
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 270 IAGPPGVGKTTTILCLARALLGVSFKDAV 356
+ GPPGVGKT+ +A AL F+ +V
Sbjct: 576 LVGPPGVGKTSVGKSIASALNREFFRFSV 604
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 2.6
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 213 DTVSRLAVFAKTGNAP-NIIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGI 389
D + + K N P I + G GVGK+TT+ +A LL +F+ V + I
Sbjct: 327 DLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILVAACDTFRSGAI 386
Query: 390 DVVRNKIK 413
+ + +K
Sbjct: 387 EQLGVHVK 394
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 26.6 bits (56), Expect = 2.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 264 IIIAGPPGVGKTTTILCLARAL 329
I++AGPP GKT + +A++L
Sbjct: 68 ILMAGPPSTGKTAIAMGMAQSL 89
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 186 TFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332
T ++ VG + S++ + G N+++ GP G GK+T I L A L
Sbjct: 8 TLNNYVGFDSITSQINRKLIRRGFQFNVMVVGPSGSGKSTLINTLFSAHL 57
>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -2
Query: 496 PSVMLSASSSITILCRPGGKVT 431
P ++L++SSSI LC+P K++
Sbjct: 206 PDIILNSSSSIMALCQPEKKMS 227
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 249 GNAPN-IIIAGPPGVGKTTTILCLARALLG 335
G P +++ GPPG GKT LARA+ G
Sbjct: 297 GKLPRGVLLTGPPGTGKT----MLARAVAG 322
>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 469 SITILCRPGGKVTFCCANIFILFRTTSIPRSFEAF 365
+I +LC GG+V N+ LF SI E F
Sbjct: 448 TIFVLCGMGGRVDHAIGNLNHLFWAASISEKNEVF 482
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 4.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 258 PNIIIAGPPGVGKTTT 305
P +I GPPG GKT T
Sbjct: 408 PLSLIQGPPGTGKTVT 423
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.4 bits (53), Expect = 6.1
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +3
Query: 264 IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASN--DRGIDVVRNKIK-MFAQQKV 434
++ GPPG GKT LA A + K + ++ + + +++ +F + K
Sbjct: 303 VLFHGPPGTGKTLMARALAAACSSENKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAKS 362
Query: 435 TLPPGRHKIVILDEADSM 488
T P I+ DE D +
Sbjct: 363 TQP----SIIFFDEIDGL 376
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 227 AGHSVFIANDIVESLWPVFLYPW 159
A +S FI +E LW + PW
Sbjct: 283 ANYSNFITQPTIERLWTILTGPW 305
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 25.0 bits (52), Expect = 8.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 264 IIIAGPPGVGKTTTILCLARA 326
+++ GPPG GKT + +A +
Sbjct: 171 VLLYGPPGTGKTMLVKAVANS 191
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 195 DIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARA 326
D+ ++ +R K I +AG PG GK+T LA+A
Sbjct: 9 DVSSYDELYNRAVELLKHQQRVLIGLAGGPGSGKSTLCAILAKA 52
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 249 GNAPNIIIAGPPGVGKT-TTILCLARAL 329
G NI++ P G GKT +LC+ L
Sbjct: 533 GTDENILLCAPTGAGKTNVAMLCILNEL 560
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 270 IAGPPGVGKTTTILCLARALLGVSFKDAVL--ELNASNDRGIDVVRNK 407
+ GP G GKT +L L R LLG + V+ ++ D+ ++RNK
Sbjct: 91 VGGPVGSGKTALLLQLCR-LLGEKYSIGVVTNDIFTREDQEF-LIRNK 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,162
Number of Sequences: 5004
Number of extensions: 39289
Number of successful extensions: 230
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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