BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11e05 (581 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 195 4e-51 SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 129 3e-31 SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 124 1e-29 SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 47 2e-06 SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 40 4e-04 SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 39 5e-04 SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 35 0.010 SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 34 0.017 SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 33 0.040 SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 31 0.093 SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 31 0.093 SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 31 0.093 SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 31 0.16 SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 30 0.28 SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 30 0.28 SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 29 0.37 SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.65 SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 29 0.65 SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 28 0.87 SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 28 1.1 SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 1.5 SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 27 2.0 SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 27 2.0 SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.0 SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 27 2.6 SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 27 2.6 SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 27 2.6 SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 27 2.6 SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 27 2.6 SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc... 26 3.5 SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 26 3.5 SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar... 26 4.6 SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 4.6 SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 6.1 SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 25 6.1 SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 25 8.1 SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 25 8.1 SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 8.1 SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 25 8.1 >SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc4|Schizosaccharomyces pombe|chr 1|||Manual Length = 342 Score = 195 bits (475), Expect = 4e-51 Identities = 89/127 (70%), Positives = 109/127 (85%) Frame = +3 Query: 135 SSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILC 314 ++S + LPW+EKYRP DDIVGNE+T+ RL V AK GN P+++I+G PG+GKTT+ILC Sbjct: 14 NNSVAYELPWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILC 73 Query: 315 LARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD 494 LA ALLG ++K+ VLELNAS++RGIDVVRN+IK FAQ+KV LPPGRHKI+ILDEADSMT Sbjct: 74 LAHALLGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDEADSMTA 133 Query: 495 GAQQALR 515 GAQQALR Sbjct: 134 GAQQALR 140 Score = 37.1 bits (82), Expect = 0.002 Identities = 16/21 (76%), Positives = 18/21 (85%) Frame = +1 Query: 517 RTMELYSSTTRFALAANNSEK 579 RTME+YS+TTRFALA N S K Sbjct: 141 RTMEIYSNTTRFALACNQSNK 161 >SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 342 Score = 129 bits (312), Expect = 3e-31 Identities = 65/142 (45%), Positives = 92/142 (64%) Frame = +3 Query: 132 PSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTIL 311 P S+ST LPW+EKYRP +D+V ++D +S L F + P+++ GPPG GKT+TIL Sbjct: 16 PLGSEST-LPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTIL 74 Query: 312 CLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT 491 AR + G ++++ ++ELNAS+DRGID VR +IK FA + + K++ILDEAD+MT Sbjct: 75 ACARKIYGPNYRNQLMELNASDDRGIDAVREQIKNFASTR-QIFASTFKMIILDEADAMT 133 Query: 492 DGAQQALRTHHGAVFQYNSFCI 557 AQ ALR + FCI Sbjct: 134 LAAQNALRRVIEKYTKNVRFCI 155 >SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2|Schizosaccharomyces pombe|chr 1|||Manual Length = 340 Score = 124 bits (299), Expect = 1e-29 Identities = 68/155 (43%), Positives = 91/155 (58%), Gaps = 6/155 (3%) Frame = +3 Query: 111 PEKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGV 290 P K+ + + KS +PW+E YRP+T D + E TV L + N P+++ G PG Sbjct: 6 PRNKKTEQEAKKS--IPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGT 63 Query: 291 GKTTTILCLARALLGVS-FKDAVLELNASNDRGIDVVRNKIKMFAQQKVT-----LPPGR 452 GKT+TIL L+R L G K VLELNAS++RGI ++R K+K FA+ VT P Sbjct: 64 GKTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTNKVDGYPCPP 123 Query: 453 HKIVILDEADSMTDGAQQALRTHHGAVFQYNSFCI 557 KI+ILDEADSMT AQ ALR + + FC+ Sbjct: 124 FKIIILDEADSMTQDAQAALRRTMESYARITRFCL 158 >SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 358 Score = 47.2 bits (107), Expect = 2e-06 Identities = 18/58 (31%), Positives = 33/58 (56%) Frame = +3 Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG 335 W+++YRP+T + ++ RL + T P++++ GP G GK T ++ + R L G Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYG 60 Score = 25.4 bits (53), Expect = 6.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +1 Query: 517 RTMELYSSTTRFALAANNSEK 579 RTME YS+ R L AN++ K Sbjct: 149 RTMEKYSNNIRLILIANSTSK 169 >SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc1|Schizosaccharomyces pombe|chr 2|||Manual Length = 934 Score = 39.5 bits (88), Expect = 4e-04 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 28/140 (20%) Frame = +3 Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAK--------TGNAPN---------IIIAGPPGV 290 W KY P + DI GN+ V +L + + N P ++++GPPG+ Sbjct: 361 WTSKYAPTSLKDICGNKGVVQKLQKWLQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGI 420 Query: 291 GKTTTILCLARALLGVSFKDAVLELNASNDR----------GIDVVRNKIKMFAQQKVTL 440 GKTT +A+ L G VLELNAS+ R G+ ++ F + + Sbjct: 421 GKTTAAHLVAK-LEGYD----VLELNASDTRSKRLLDEQLFGVTDSQSLAGYFGTKANPV 475 Query: 441 PPGRHKIV-ILDEADSMTDG 497 + ++V I+DE D M+ G Sbjct: 476 DMAKSRLVLIMDEIDGMSSG 495 >SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizosaccharomyces pombe|chr 1|||Manual Length = 606 Score = 39.1 bits (87), Expect = 5e-04 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Frame = +3 Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLARAL 329 W EKY PQ D+ ++ +S + + T + + ++I GP G GK+T + LA+ L Sbjct: 72 WFEKYIPQKAADLAVHKSKISAIKQWMLTDSLESRLLLICGPSGCGKSTAVQVLAKEL 129 >SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces pombe|chr 2|||Manual Length = 905 Score = 34.7 bits (76), Expect = 0.010 Identities = 18/55 (32%), Positives = 26/55 (47%) Frame = +3 Query: 168 EKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332 E R D ++G ED + R N ++ G PGVGKT+ LAR ++ Sbjct: 173 ELARNGQLDPVIGREDEIRRTIRVLSRRTKNNPVLIGEPGVGKTSIAEGLARRII 227 >SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |Schizosaccharomyces pombe|chr 2|||Manual Length = 1944 Score = 33.9 bits (74), Expect = 0.017 Identities = 16/34 (47%), Positives = 22/34 (64%) Frame = +3 Query: 231 AVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332 A++A + N +I GPPG GKT TIL + A+L Sbjct: 1278 AIYASSVNDGFTLIQGPPGTGKTKTILGMIGAVL 1311 >SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|Schizosaccharomyces pombe|chr 2|||Manual Length = 1398 Score = 32.7 bits (71), Expect = 0.040 Identities = 27/77 (35%), Positives = 37/77 (48%) Frame = +3 Query: 267 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPP 446 +I G PG GKTTTI L R+LL K + L + +D + K+K V L Sbjct: 952 LILGMPGTGKTTTISSLIRSLLA---KKKKILLTSFTHLAVDNILIKLKGCDSTIVRL-G 1007 Query: 447 GRHKIVILDEADSMTDG 497 HKI L + +T+G Sbjct: 1008 SPHKIHPLVKEFCLTEG 1024 >SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1687 Score = 31.5 bits (68), Expect = 0.093 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +3 Query: 231 AVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332 A+ N +I GPPG GKT TI+ + ALL Sbjct: 1137 AIMCALDNNGFTLIQGPPGTGKTKTIIGIISALL 1170 >SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit Ctf18|Schizosaccharomyces pombe|chr 2|||Manual Length = 960 Score = 31.5 bits (68), Expect = 0.093 Identities = 24/73 (32%), Positives = 34/73 (46%) Frame = +3 Query: 264 IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP 443 +++ G G GKTT +A +K VLE+NAS+DR V K+ L Sbjct: 419 MMLTGLAGAGKTTLAHVIAHQ---AGYK--VLEINASDDRTAHTVHEKVSSAISNHSAL- 472 Query: 444 PGRHKIVILDEAD 482 + VI+DE D Sbjct: 473 SSQPTCVIVDEID 485 Score = 30.3 bits (65), Expect = 0.21 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 129 KPSSSKSTNLPWIEKYRPQTFDDIVGNE 212 KP S K W++ YRPQ F D++G+E Sbjct: 346 KPQSQKL----WVDTYRPQLFRDLLGDE 369 >SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pombe|chr 2|||Manual Length = 779 Score = 31.5 bits (68), Expect = 0.093 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Frame = +3 Query: 234 VFAKTGNAP--NIIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNK 407 V+ TG P +++ GPPG GKT LA LGV F S G K Sbjct: 199 VYQYTGIHPPRGVLLHGPPGCGKTMLANALANE-LGVPFISISAPSIVSGMSGES--EKK 255 Query: 408 IKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 515 ++ ++ +L P ++ +DE D++T + A R Sbjct: 256 VREVFEEAKSLAP---CLMFIDEIDAVTPKRESAQR 288 >SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosaccharomyces pombe|chr 2|||Manual Length = 803 Score = 30.7 bits (66), Expect = 0.16 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = +3 Query: 192 DDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332 D ++G E+ + R N + GP GVGKT + LA ++ Sbjct: 111 DPVIGREEEIQRTIQILSRRTKNNPALVGPAGVGKTAIMEGLASRII 157 >SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3|||Manual Length = 175 Score = 29.9 bits (64), Expect = 0.28 Identities = 12/15 (80%), Positives = 12/15 (80%) Frame = +3 Query: 258 PNIIIAGPPGVGKTT 302 PNIII G PG GKTT Sbjct: 9 PNIIICGTPGTGKTT 23 >SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizosaccharomyces pombe|chr 3|||Manual Length = 388 Score = 29.9 bits (64), Expect = 0.28 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = +3 Query: 234 VFAKTGNAP--NIIIAGPPGVGKTTTILCLARALLGVSFKDAV 356 +F + G P +++ GPPG GKT +A A LGV+F V Sbjct: 157 LFLRVGIKPPKGVLLYGPPGTGKTLLARAVA-ASLGVNFLKVV 198 >SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 315 Score = 29.5 bits (63), Expect = 0.37 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +3 Query: 267 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASND 380 ++ GPPG GK+T + + L + ++ L+ +ND Sbjct: 6 VVVGPPGSGKSTYCFGMYQLLSAIGRSSIIVNLDPAND 43 >SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual Length = 4717 Score = 28.7 bits (61), Expect = 0.65 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +3 Query: 264 IIIAGPPGVGKTTTILCLAR 323 I++ G PGVGKT+ I LAR Sbjct: 1562 ILLEGSPGVGKTSLITALAR 1581 Score = 27.1 bits (57), Expect = 2.0 Identities = 18/39 (46%), Positives = 24/39 (61%) Frame = +3 Query: 219 VSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG 335 + +LA +T N P +++ G G GKTTTI LA LLG Sbjct: 457 LEQLAAGVQT-NEP-LLLVGETGTGKTTTIQLLA-GLLG 492 >SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosaccharomyces pombe|chr 1|||Manual Length = 650 Score = 28.7 bits (61), Expect = 0.65 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = -1 Query: 467 YHYFMSTRWQS--NLLLRKHFYLIPDDIY 387 Y ++STRW LLLR +Y P DIY Sbjct: 197 YTEYVSTRWYRAPELLLRDSYYSFPVDIY 225 >SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|Schizosaccharomyces pombe|chr 2|||Manual Length = 972 Score = 28.3 bits (60), Expect = 0.87 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%) Frame = +3 Query: 198 IVGNEDTVSRLAVFAKT----GNAPNIIIAGPPGVGKTTTI-LCLARALLGVSFKDAVLE 362 +VG+ D ++L + + G ++II GP G GK+ + L+RA ++ K V+ Sbjct: 552 LVGHMDEQTKLYQWVRQTIVLGEGNSVIIVGPRGSGKSVLVDDILSRAAQEINEKSYVVR 611 Query: 363 LNAS 374 LN + Sbjct: 612 LNGT 615 >SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizosaccharomyces pombe|chr 1|||Manual Length = 1290 Score = 27.9 bits (59), Expect = 1.1 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 255 APNIIIAGPPGVGKTTTILCLARALLGV 338 +P +I G G GKTT I CL A G+ Sbjct: 27 SPLTLIVGQNGSGKTTIIECLKYATTGI 54 >SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1121 Score = 27.5 bits (58), Expect = 1.5 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%) Frame = +3 Query: 258 PNIIIA--GPPGVGKTTTILCLAR 323 P +I+A GPPG GK+T I L R Sbjct: 73 PPVIVAVMGPPGTGKSTLIKSLVR 96 >SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schizosaccharomyces pombe|chr 2|||Manual Length = 438 Score = 27.1 bits (57), Expect = 2.0 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 13/79 (16%) Frame = +3 Query: 132 PSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAV-----------FAKTGNAP--NIII 272 P S + +E+ T+ D+ G ++ + RL F K G P I++ Sbjct: 159 PKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIML 218 Query: 273 AGPPGVGKTTTILCLARAL 329 GPPG GKT LC ARA+ Sbjct: 219 YGPPGTGKT---LC-ARAV 233 >SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces pombe|chr 1|||Manual Length = 432 Score = 27.1 bits (57), Expect = 2.0 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 4/79 (5%) Frame = +3 Query: 264 IIIAGPPGVGKTTTILCLA----RALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQK 431 I++ GPPG GK+ +A +S D V + ++R +VR +M +QK Sbjct: 165 ILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESER---LVRQLFEMAREQK 221 Query: 432 VTLPPGRHKIVILDEADSM 488 + I+ +DE DS+ Sbjct: 222 PS-------IIFIDEIDSL 233 >SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccharomyces pombe|chr 1|||Manual Length = 4196 Score = 27.1 bits (57), Expect = 2.0 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 4/95 (4%) Frame = +3 Query: 198 IVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNA 371 ++ DTV R A F N +I GPPG GK+ +L R+ V ++ Sbjct: 2493 VIPTLDTV-RYAEFLNFSLTKNRCVIFCGPPGSGKSMLMLGTLRSRQDVEVIALNFSIST 2551 Query: 372 SNDRGIDVVRNKIKMFAQQKVTL--PPGRHKIVIL 470 S+ + + + +T+ P K+++L Sbjct: 2552 SSKSVVSFLEQSTVYYRSTGMTIMCPKNHEKVLVL 2586 >SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |Schizosaccharomyces pombe|chr 3|||Manual Length = 660 Score = 26.6 bits (56), Expect = 2.6 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +3 Query: 267 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTL-P 443 +I GPPG GKT T++ + + L V +L ASN +D + +++ V L Sbjct: 229 LIHGPPGTGKTHTLVEIIQQL--VLRNKRILVCGASN-LAVDNIVDRLSSSGIPMVRLGH 285 Query: 444 PGRHKIVILDEA 479 P R ILD + Sbjct: 286 PARLLPSILDHS 297 >SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1067 Score = 26.6 bits (56), Expect = 2.6 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +3 Query: 270 IAGPPGVGKTTTILCLARALLGVSFKDAV 356 + GPPGVGKT+ +A AL F+ +V Sbjct: 576 LVGPPGVGKTSVGKSIASALNREFFRFSV 604 >SPBC3B9.03 |||signal recognition particle receptor alpha subunit Srp101|Schizosaccharomyces pombe|chr 2|||Manual Length = 547 Score = 26.6 bits (56), Expect = 2.6 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = +3 Query: 213 DTVSRLAVFAKTGNAP-NIIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGI 389 D + + K N P I + G GVGK+TT+ +A LL +F+ V + I Sbjct: 327 DLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILVAACDTFRSGAI 386 Query: 390 DVVRNKIK 413 + + +K Sbjct: 387 EQLGVHVK 394 >SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 465 Score = 26.6 bits (56), Expect = 2.6 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = +3 Query: 264 IIIAGPPGVGKTTTILCLARAL 329 I++AGPP GKT + +A++L Sbjct: 68 ILMAGPPSTGKTAIAMGMAQSL 89 >SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||Manual Length = 331 Score = 26.6 bits (56), Expect = 2.6 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = +3 Query: 186 TFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332 T ++ VG + S++ + G N+++ GP G GK+T I L A L Sbjct: 8 TLNNYVGFDSITSQINRKLIRRGFQFNVMVVGPSGSGKSTLINTLFSAHL 57 >SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 361 Score = 26.2 bits (55), Expect = 3.5 Identities = 10/22 (45%), Positives = 17/22 (77%) Frame = -2 Query: 496 PSVMLSASSSITILCRPGGKVT 431 P ++L++SSSI LC+P K++ Sbjct: 206 PDIILNSSSSIMALCQPEKKMS 227 >SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 709 Score = 26.2 bits (55), Expect = 3.5 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = +3 Query: 249 GNAPN-IIIAGPPGVGKTTTILCLARALLG 335 G P +++ GPPG GKT LARA+ G Sbjct: 297 GKLPRGVLLTGPPGTGKT----MLARAVAG 322 >SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 569 Score = 25.8 bits (54), Expect = 4.6 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -2 Query: 469 SITILCRPGGKVTFCCANIFILFRTTSIPRSFEAF 365 +I +LC GG+V N+ LF SI E F Sbjct: 448 TIFVLCGMGGRVDHAIGNLNHLFWAASISEKNEVF 482 >SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccharomyces pombe|chr 1|||Manual Length = 925 Score = 25.8 bits (54), Expect = 4.6 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = +3 Query: 258 PNIIIAGPPGVGKTTT 305 P +I GPPG GKT T Sbjct: 408 PLSLIQGPPGTGKTVT 423 >SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1190 Score = 25.4 bits (53), Expect = 6.1 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%) Frame = +3 Query: 264 IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASN--DRGIDVVRNKIK-MFAQQKV 434 ++ GPPG GKT LA A + K + ++ + + +++ +F + K Sbjct: 303 VLFHGPPGTGKTLMARALAAACSSENKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAKS 362 Query: 435 TLPPGRHKIVILDEADSM 488 T P I+ DE D + Sbjct: 363 TQP----SIIFFDEIDGL 376 >SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr 1|||Manual Length = 990 Score = 25.4 bits (53), Expect = 6.1 Identities = 9/23 (39%), Positives = 12/23 (52%) Frame = -1 Query: 227 AGHSVFIANDIVESLWPVFLYPW 159 A +S FI +E LW + PW Sbjct: 283 ANYSNFITQPTIERLWTILTGPW 305 >SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizosaccharomyces pombe|chr 3|||Manual Length = 389 Score = 25.0 bits (52), Expect = 8.1 Identities = 8/21 (38%), Positives = 14/21 (66%) Frame = +3 Query: 264 IIIAGPPGVGKTTTILCLARA 326 +++ GPPG GKT + +A + Sbjct: 171 VLLYGPPGTGKTMLVKAVANS 191 >SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces pombe|chr 1|||Manual Length = 235 Score = 25.0 bits (52), Expect = 8.1 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = +3 Query: 195 DIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARA 326 D+ ++ +R K I +AG PG GK+T LA+A Sbjct: 9 DVSSYDELYNRAVELLKHQQRVLIGLAGGPGSGKSTLCAILAKA 52 >SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 2176 Score = 25.0 bits (52), Expect = 8.1 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Frame = +3 Query: 249 GNAPNIIIAGPPGVGKT-TTILCLARAL 329 G NI++ P G GKT +LC+ L Sbjct: 533 GTDENILLCAPTGAGKTNVAMLCILNEL 560 >SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces pombe|chr 3|||Manual Length = 286 Score = 25.0 bits (52), Expect = 8.1 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Frame = +3 Query: 270 IAGPPGVGKTTTILCLARALLGVSFKDAVL--ELNASNDRGIDVVRNK 407 + GP G GKT +L L R LLG + V+ ++ D+ ++RNK Sbjct: 91 VGGPVGSGKTALLLQLCR-LLGEKYSIGVVTNDIFTREDQEF-LIRNK 136 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,099,162 Number of Sequences: 5004 Number of extensions: 39289 Number of successful extensions: 230 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 204 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 227 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 250133048 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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