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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e05
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc...   195   4e-51
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...   129   3e-31
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2...   124   1e-29
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ...    47   2e-06
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    40   4e-04
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    39   5e-04
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    35   0.010
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    34   0.017
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    33   0.040
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    31   0.093
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    31   0.093
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    31   0.093
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    31   0.16 
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3...    30   0.28 
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    30   0.28 
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.37 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        29   0.65 
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    29   0.65 
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    28   0.87 
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    28   1.1  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    27   1.5  
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    27   2.0  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    27   2.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.0  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    27   2.6  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    27   2.6  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    27   2.6  
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c...    27   2.6  
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    27   2.6  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    26   3.5  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    26   3.5  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    26   4.6  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   4.6  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   6.1  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   6.1  
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo...    25   8.1  
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p...    25   8.1  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   8.1  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    25   8.1  

>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
           Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score =  195 bits (475), Expect = 4e-51
 Identities = 89/127 (70%), Positives = 109/127 (85%)
 Frame = +3

Query: 135 SSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILC 314
           ++S +  LPW+EKYRP   DDIVGNE+T+ RL V AK GN P+++I+G PG+GKTT+ILC
Sbjct: 14  NNSVAYELPWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILC 73

Query: 315 LARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTD 494
           LA ALLG ++K+ VLELNAS++RGIDVVRN+IK FAQ+KV LPPGRHKI+ILDEADSMT 
Sbjct: 74  LAHALLGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDEADSMTA 133

Query: 495 GAQQALR 515
           GAQQALR
Sbjct: 134 GAQQALR 140



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = +1

Query: 517 RTMELYSSTTRFALAANNSEK 579
           RTME+YS+TTRFALA N S K
Sbjct: 141 RTMEIYSNTTRFALACNQSNK 161


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score =  129 bits (312), Expect = 3e-31
 Identities = 65/142 (45%), Positives = 92/142 (64%)
 Frame = +3

Query: 132 PSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTIL 311
           P  S+ST LPW+EKYRP   +D+V ++D +S L  F  +   P+++  GPPG GKT+TIL
Sbjct: 16  PLGSEST-LPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTIL 74

Query: 312 CLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMT 491
             AR + G ++++ ++ELNAS+DRGID VR +IK FA  +  +     K++ILDEAD+MT
Sbjct: 75  ACARKIYGPNYRNQLMELNASDDRGIDAVREQIKNFASTR-QIFASTFKMIILDEADAMT 133

Query: 492 DGAQQALRTHHGAVFQYNSFCI 557
             AQ ALR       +   FCI
Sbjct: 134 LAAQNALRRVIEKYTKNVRFCI 155


>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
           Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score =  124 bits (299), Expect = 1e-29
 Identities = 68/155 (43%), Positives = 91/155 (58%), Gaps = 6/155 (3%)
 Frame = +3

Query: 111 PEKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGV 290
           P  K+ +  + KS  +PW+E YRP+T D +   E TV  L     + N P+++  G PG 
Sbjct: 6   PRNKKTEQEAKKS--IPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGT 63

Query: 291 GKTTTILCLARALLGVS-FKDAVLELNASNDRGIDVVRNKIKMFAQQKVT-----LPPGR 452
           GKT+TIL L+R L G    K  VLELNAS++RGI ++R K+K FA+  VT      P   
Sbjct: 64  GKTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTNKVDGYPCPP 123

Query: 453 HKIVILDEADSMTDGAQQALRTHHGAVFQYNSFCI 557
            KI+ILDEADSMT  AQ ALR    +  +   FC+
Sbjct: 124 FKIIILDEADSMTQDAQAALRRTMESYARITRFCL 158


>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 18/58 (31%), Positives = 33/58 (56%)
 Frame = +3

Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG 335
           W+++YRP+T   +  ++    RL   + T   P++++ GP G GK T ++ + R L G
Sbjct: 3   WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYG 60



 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 517 RTMELYSSTTRFALAANNSEK 579
           RTME YS+  R  L AN++ K
Sbjct: 149 RTMEKYSNNIRLILIANSTSK 169


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 28/140 (20%)
 Frame = +3

Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAK--------TGNAPN---------IIIAGPPGV 290
           W  KY P +  DI GN+  V +L  + +          N P          ++++GPPG+
Sbjct: 361 WTSKYAPTSLKDICGNKGVVQKLQKWLQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGI 420

Query: 291 GKTTTILCLARALLGVSFKDAVLELNASNDR----------GIDVVRNKIKMFAQQKVTL 440
           GKTT    +A+ L G      VLELNAS+ R          G+   ++    F  +   +
Sbjct: 421 GKTTAAHLVAK-LEGYD----VLELNASDTRSKRLLDEQLFGVTDSQSLAGYFGTKANPV 475

Query: 441 PPGRHKIV-ILDEADSMTDG 497
              + ++V I+DE D M+ G
Sbjct: 476 DMAKSRLVLIMDEIDGMSSG 495


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +3

Query: 162 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLARAL 329
           W EKY PQ   D+  ++  +S +  +  T +  +  ++I GP G GK+T +  LA+ L
Sbjct: 72  WFEKYIPQKAADLAVHKSKISAIKQWMLTDSLESRLLLICGPSGCGKSTAVQVLAKEL 129


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 168 EKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332
           E  R    D ++G ED + R           N ++ G PGVGKT+    LAR ++
Sbjct: 173 ELARNGQLDPVIGREDEIRRTIRVLSRRTKNNPVLIGEPGVGKTSIAEGLARRII 227


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 33.9 bits (74), Expect = 0.017
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +3

Query: 231  AVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332
            A++A + N    +I GPPG GKT TIL +  A+L
Sbjct: 1278 AIYASSVNDGFTLIQGPPGTGKTKTILGMIGAVL 1311


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 32.7 bits (71), Expect = 0.040
 Identities = 27/77 (35%), Positives = 37/77 (48%)
 Frame = +3

Query: 267  IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPP 446
            +I G PG GKTTTI  L R+LL    K   + L +     +D +  K+K      V L  
Sbjct: 952  LILGMPGTGKTTTISSLIRSLLA---KKKKILLTSFTHLAVDNILIKLKGCDSTIVRL-G 1007

Query: 447  GRHKIVILDEADSMTDG 497
              HKI  L +   +T+G
Sbjct: 1008 SPHKIHPLVKEFCLTEG 1024


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 31.5 bits (68), Expect = 0.093
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 231  AVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332
            A+     N    +I GPPG GKT TI+ +  ALL
Sbjct: 1137 AIMCALDNNGFTLIQGPPGTGKTKTIIGIISALL 1170


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 31.5 bits (68), Expect = 0.093
 Identities = 24/73 (32%), Positives = 34/73 (46%)
 Frame = +3

Query: 264 IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP 443
           +++ G  G GKTT    +A       +K  VLE+NAS+DR    V  K+         L 
Sbjct: 419 MMLTGLAGAGKTTLAHVIAHQ---AGYK--VLEINASDDRTAHTVHEKVSSAISNHSAL- 472

Query: 444 PGRHKIVILDEAD 482
             +   VI+DE D
Sbjct: 473 SSQPTCVIVDEID 485



 Score = 30.3 bits (65), Expect = 0.21
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 129 KPSSSKSTNLPWIEKYRPQTFDDIVGNE 212
           KP S K     W++ YRPQ F D++G+E
Sbjct: 346 KPQSQKL----WVDTYRPQLFRDLLGDE 369


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 31.5 bits (68), Expect = 0.093
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
 Frame = +3

Query: 234 VFAKTGNAP--NIIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNK 407
           V+  TG  P   +++ GPPG GKT     LA   LGV F         S   G      K
Sbjct: 199 VYQYTGIHPPRGVLLHGPPGCGKTMLANALANE-LGVPFISISAPSIVSGMSGES--EKK 255

Query: 408 IKMFAQQKVTLPPGRHKIVILDEADSMTDGAQQALR 515
           ++   ++  +L P    ++ +DE D++T   + A R
Sbjct: 256 VREVFEEAKSLAP---CLMFIDEIDAVTPKRESAQR 288


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 192 DDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332
           D ++G E+ + R           N  + GP GVGKT  +  LA  ++
Sbjct: 111 DPVIGREEEIQRTIQILSRRTKNNPALVGPAGVGKTAIMEGLASRII 157


>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 175

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +3

Query: 258 PNIIIAGPPGVGKTT 302
           PNIII G PG GKTT
Sbjct: 9   PNIIICGTPGTGKTT 23


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 234 VFAKTGNAP--NIIIAGPPGVGKTTTILCLARALLGVSFKDAV 356
           +F + G  P   +++ GPPG GKT     +A A LGV+F   V
Sbjct: 157 LFLRVGIKPPKGVLLYGPPGTGKTLLARAVA-ASLGVNFLKVV 198


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 267 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASND 380
           ++ GPPG GK+T    + + L  +     ++ L+ +ND
Sbjct: 6   VVVGPPGSGKSTYCFGMYQLLSAIGRSSIIVNLDPAND 43


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 264  IIIAGPPGVGKTTTILCLAR 323
            I++ G PGVGKT+ I  LAR
Sbjct: 1562 ILLEGSPGVGKTSLITALAR 1581



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +3

Query: 219 VSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG 335
           + +LA   +T N P +++ G  G GKTTTI  LA  LLG
Sbjct: 457 LEQLAAGVQT-NEP-LLLVGETGTGKTTTIQLLA-GLLG 492


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -1

Query: 467 YHYFMSTRWQS--NLLLRKHFYLIPDDIY 387
           Y  ++STRW     LLLR  +Y  P DIY
Sbjct: 197 YTEYVSTRWYRAPELLLRDSYYSFPVDIY 225


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
 Frame = +3

Query: 198 IVGNEDTVSRLAVFAKT----GNAPNIIIAGPPGVGKTTTI-LCLARALLGVSFKDAVLE 362
           +VG+ D  ++L  + +     G   ++II GP G GK+  +   L+RA   ++ K  V+ 
Sbjct: 552 LVGHMDEQTKLYQWVRQTIVLGEGNSVIIVGPRGSGKSVLVDDILSRAAQEINEKSYVVR 611

Query: 363 LNAS 374
           LN +
Sbjct: 612 LNGT 615


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 255 APNIIIAGPPGVGKTTTILCLARALLGV 338
           +P  +I G  G GKTT I CL  A  G+
Sbjct: 27  SPLTLIVGQNGSGKTTIIECLKYATTGI 54


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +3

Query: 258 PNIIIA--GPPGVGKTTTILCLAR 323
           P +I+A  GPPG GK+T I  L R
Sbjct: 73  PPVIVAVMGPPGTGKSTLIKSLVR 96


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
 Frame = +3

Query: 132 PSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAV-----------FAKTGNAP--NIII 272
           P    S  +  +E+    T+ D+ G ++ + RL             F K G  P   I++
Sbjct: 159 PKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIML 218

Query: 273 AGPPGVGKTTTILCLARAL 329
            GPPG GKT   LC ARA+
Sbjct: 219 YGPPGTGKT---LC-ARAV 233


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +3

Query: 264 IIIAGPPGVGKTTTILCLA----RALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQK 431
           I++ GPPG GK+     +A         +S  D V +    ++R   +VR   +M  +QK
Sbjct: 165 ILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESER---LVRQLFEMAREQK 221

Query: 432 VTLPPGRHKIVILDEADSM 488
            +       I+ +DE DS+
Sbjct: 222 PS-------IIFIDEIDSL 233


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
 Frame = +3

Query: 198  IVGNEDTVSRLAVFAKTGNAPN--IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNA 371
            ++   DTV R A F       N  +I  GPPG GK+  +L   R+   V        ++ 
Sbjct: 2493 VIPTLDTV-RYAEFLNFSLTKNRCVIFCGPPGSGKSMLMLGTLRSRQDVEVIALNFSIST 2551

Query: 372  SNDRGIDVVRNKIKMFAQQKVTL--PPGRHKIVIL 470
            S+   +  +      +    +T+  P    K+++L
Sbjct: 2552 SSKSVVSFLEQSTVYYRSTGMTIMCPKNHEKVLVL 2586


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 267 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTL-P 443
           +I GPPG GKT T++ + + L  V     +L   ASN   +D + +++       V L  
Sbjct: 229 LIHGPPGTGKTHTLVEIIQQL--VLRNKRILVCGASN-LAVDNIVDRLSSSGIPMVRLGH 285

Query: 444 PGRHKIVILDEA 479
           P R    ILD +
Sbjct: 286 PARLLPSILDHS 297


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 270 IAGPPGVGKTTTILCLARALLGVSFKDAV 356
           + GPPGVGKT+    +A AL    F+ +V
Sbjct: 576 LVGPPGVGKTSVGKSIASALNREFFRFSV 604


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 213 DTVSRLAVFAKTGNAP-NIIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGI 389
           D +  +    K  N P  I + G  GVGK+TT+  +A  LL  +F+  V   +      I
Sbjct: 327 DLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILVAACDTFRSGAI 386

Query: 390 DVVRNKIK 413
           + +   +K
Sbjct: 387 EQLGVHVK 394


>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 465

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 264 IIIAGPPGVGKTTTILCLARAL 329
           I++AGPP  GKT   + +A++L
Sbjct: 68  ILMAGPPSTGKTAIAMGMAQSL 89


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 186 TFDDIVGNEDTVSRL-AVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 332
           T ++ VG +   S++     + G   N+++ GP G GK+T I  L  A L
Sbjct: 8   TLNNYVGFDSITSQINRKLIRRGFQFNVMVVGPSGSGKSTLINTLFSAHL 57


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 496 PSVMLSASSSITILCRPGGKVT 431
           P ++L++SSSI  LC+P  K++
Sbjct: 206 PDIILNSSSSIMALCQPEKKMS 227


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 249 GNAPN-IIIAGPPGVGKTTTILCLARALLG 335
           G  P  +++ GPPG GKT     LARA+ G
Sbjct: 297 GKLPRGVLLTGPPGTGKT----MLARAVAG 322


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 469 SITILCRPGGKVTFCCANIFILFRTTSIPRSFEAF 365
           +I +LC  GG+V     N+  LF   SI    E F
Sbjct: 448 TIFVLCGMGGRVDHAIGNLNHLFWAASISEKNEVF 482


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 258 PNIIIAGPPGVGKTTT 305
           P  +I GPPG GKT T
Sbjct: 408 PLSLIQGPPGTGKTVT 423


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +3

Query: 264 IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASN--DRGIDVVRNKIK-MFAQQKV 434
           ++  GPPG GKT     LA A    + K +      ++   + +     +++ +F + K 
Sbjct: 303 VLFHGPPGTGKTLMARALAAACSSENKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAKS 362

Query: 435 TLPPGRHKIVILDEADSM 488
           T P     I+  DE D +
Sbjct: 363 TQP----SIIFFDEIDGL 376


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 227 AGHSVFIANDIVESLWPVFLYPW 159
           A +S FI    +E LW +   PW
Sbjct: 283 ANYSNFITQPTIERLWTILTGPW 305


>SPCC576.10c |rpt3||19S proteasome regulatory subunit
           Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 264 IIIAGPPGVGKTTTILCLARA 326
           +++ GPPG GKT  +  +A +
Sbjct: 171 VLLYGPPGTGKTMLVKAVANS 191


>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 195 DIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARA 326
           D+   ++  +R     K      I +AG PG GK+T    LA+A
Sbjct: 9   DVSSYDELYNRAVELLKHQQRVLIGLAGGPGSGKSTLCAILAKA 52


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +3

Query: 249 GNAPNIIIAGPPGVGKT-TTILCLARAL 329
           G   NI++  P G GKT   +LC+   L
Sbjct: 533 GTDENILLCAPTGAGKTNVAMLCILNEL 560


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 270 IAGPPGVGKTTTILCLARALLGVSFKDAVL--ELNASNDRGIDVVRNK 407
           + GP G GKT  +L L R LLG  +   V+  ++    D+   ++RNK
Sbjct: 91  VGGPVGSGKTALLLQLCR-LLGEKYSIGVVTNDIFTREDQEF-LIRNK 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,162
Number of Sequences: 5004
Number of extensions: 39289
Number of successful extensions: 230
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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