Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e04
         (515 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)               31   0.56 
SB_5347| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.98 

>SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)
          Length = 537

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +3

Query: 261 VLSVMLLFPISDAYENHKKTEE-NEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN 437
           V   + LF   +   + +K +  +E   + +E+  +IF+ +Q I N+C T AL+ SV  N
Sbjct: 27  VYGFIFLFKWIEERRSRRKIQHIDESFVENEEIVNDIFFAQQVIPNSCATHALL-SVLLN 85

Query: 438 TDIIELSD 461
              I+L +
Sbjct: 86  CPHIDLGE 93


>SB_5347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 119 HFSHSNCGVDEGD*SIKW*QLDKSNYIFKIVERQTSNK 6
           HF   N  +D G   IKW Q  K+N  + +++R   +K
Sbjct: 175 HFLKYNFDLDNGSVDIKWMQGAKTNICYNVLDRNVHDK 212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,313,670
Number of Sequences: 59808
Number of extensions: 298798
Number of successful extensions: 678
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)