Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e03
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22322| Best HMM Match : Neurochondrin (HMM E-Value=2.9e-08)         79   4e-15
SB_19926| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.78 
SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)                  28   7.2  
SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_22322| Best HMM Match : Neurochondrin (HMM E-Value=2.9e-08)
          Length = 561

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 31/80 (38%), Positives = 58/80 (72%)
 Frame = +2

Query: 392 DVSEPIKKCILILKNARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIGFQFLKKLLT 571
           D    ++KCI++LK+ ++D E+FAAL +VT+LV+S   +S  ++ LF A+GF+F+ +LL 
Sbjct: 15  DSGGALQKCIMMLKSVKNDNERFAALLLVTQLVQSDSISSEQRRELFNAVGFKFINRLLN 74

Query: 572 SNSVXDDCPPSVYKSVALSV 631
           + +V  DCP  +++S+ +++
Sbjct: 75  TTTVPADCPAGMFRSLGMTM 94


>SB_19926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 416 CILILKNARSDTEKFAALFMVTKLVK-SKDCNSTAKKALFEAIGFQFLKKLLTSNS 580
           CI IL+N     +    +F +T +V  S+DC  +A K L   +       LLTSNS
Sbjct: 38  CIDILRNVTKTVKSGTEVFKLTVVVTLSRDCGRSANK-LMRKLAVDASNLLLTSNS 92


>SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2011

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 392  HPLSLTHDTLTKRNRAPLSARNRSRIVQTATRSTSR 285
            HPL  TH+     N+ P + RN   +   + RS SR
Sbjct: 1771 HPLRSTHEPAAGLNKIPHTRRNSQGLASQSERSLSR 1806


>SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)
          Length = 829

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = -3

Query: 456 FSVSLLAFFKMSMHFLIGSDTSPIVTNTRHAHKTQ*GSTECAESQSDRSNSDSI 295
           +SV  +A   +  H  +   TS  +TN + A+++Q  +T+ +    + S+ DS+
Sbjct: 8   WSVMTIAVMAVVCHDEVTDPTSARITNQKAANRSQRSATQMSHKLYNMSDEDSL 61


>SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 318 DRSNSDSIHITFIIRVCSLPK*LNLDVELTFSYYVILIIAHWNVN 184
           +R NS   H   I     LP   NL+VE+   + + L+ A W V+
Sbjct: 343 NRYNSTGNHFFSITATNRLPTSANLEVEVIVEFPLQLLTAQWYVD 387


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,716,368
Number of Sequences: 59808
Number of extensions: 331046
Number of successful extensions: 537
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)