Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11e03
(632 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC024592-1|AAH24592.1| 729|Homo sapiens neurochondrin protein. 65 2e-10
AC004865-1|AAD05029.1| 730|Homo sapiens unknown protein. 65 2e-10
AB027514-2|BAA77831.1| 712|Homo sapiens neurochondrin-2 protein. 65 2e-10
AB027514-1|BAA77830.1| 729|Homo sapiens neurochondrin-1 protein. 65 2e-10
AB018740-1|BAA85385.2| 712|Homo sapiens neurochondrin-2 protein. 65 2e-10
AB018739-1|BAA85384.2| 729|Homo sapiens neurochondrin-1 protein. 65 2e-10
AB011179-1|BAA25533.1| 731|Homo sapiens KIAA0607 protein protein. 65 2e-10
BC047602-1|AAH47602.1| 1884|Homo sapiens RTTN protein protein. 32 1.5
>BC024592-1|AAH24592.1| 729|Homo sapiens neurochondrin protein.
Length = 729
Score = 65.3 bits (152), Expect = 2e-10
Identities = 28/89 (31%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +2
Query: 368 CRVLVTMGDVSEP-IKKCILILKNARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIG 544
C + + P +++ + L+ A++D+E+FAAL +VTK VK+ D ++ ++ +F+A+G
Sbjct: 22 CEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVG 81
Query: 545 FQFLKKLLTSNSVXDDCPPSVYKSVALSV 631
F F +LLT+ D CP V +++ +++
Sbjct: 82 FTFPNRLLTTKEAPDGCPDHVLRALGVAL 110
>AC004865-1|AAD05029.1| 730|Homo sapiens unknown protein.
Length = 730
Score = 65.3 bits (152), Expect = 2e-10
Identities = 28/89 (31%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +2
Query: 368 CRVLVTMGDVSEP-IKKCILILKNARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIG 544
C + + P +++ + L+ A++D+E+FAAL +VTK VK+ D ++ ++ +F+A+G
Sbjct: 23 CEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVG 82
Query: 545 FQFLKKLLTSNSVXDDCPPSVYKSVALSV 631
F F +LLT+ D CP V +++ +++
Sbjct: 83 FTFPNRLLTTKEAPDGCPDHVLRALGVAL 111
>AB027514-2|BAA77831.1| 712|Homo sapiens neurochondrin-2 protein.
Length = 712
Score = 65.3 bits (152), Expect = 2e-10
Identities = 28/89 (31%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +2
Query: 368 CRVLVTMGDVSEP-IKKCILILKNARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIG 544
C + + P +++ + L+ A++D+E+FAAL +VTK VK+ D ++ ++ +F+A+G
Sbjct: 5 CEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVG 64
Query: 545 FQFLKKLLTSNSVXDDCPPSVYKSVALSV 631
F F +LLT+ D CP V +++ +++
Sbjct: 65 FTFPNRLLTTKEAPDGCPDHVLRALGVAL 93
>AB027514-1|BAA77830.1| 729|Homo sapiens neurochondrin-1 protein.
Length = 729
Score = 65.3 bits (152), Expect = 2e-10
Identities = 28/89 (31%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +2
Query: 368 CRVLVTMGDVSEP-IKKCILILKNARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIG 544
C + + P +++ + L+ A++D+E+FAAL +VTK VK+ D ++ ++ +F+A+G
Sbjct: 22 CEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVG 81
Query: 545 FQFLKKLLTSNSVXDDCPPSVYKSVALSV 631
F F +LLT+ D CP V +++ +++
Sbjct: 82 FTFPNRLLTTKEAPDGCPDHVLRALGVAL 110
>AB018740-1|BAA85385.2| 712|Homo sapiens neurochondrin-2 protein.
Length = 712
Score = 65.3 bits (152), Expect = 2e-10
Identities = 28/89 (31%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +2
Query: 368 CRVLVTMGDVSEP-IKKCILILKNARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIG 544
C + + P +++ + L+ A++D+E+FAAL +VTK VK+ D ++ ++ +F+A+G
Sbjct: 5 CEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVG 64
Query: 545 FQFLKKLLTSNSVXDDCPPSVYKSVALSV 631
F F +LLT+ D CP V +++ +++
Sbjct: 65 FTFPNRLLTTKEAPDGCPDHVLRALGVAL 93
>AB018739-1|BAA85384.2| 729|Homo sapiens neurochondrin-1 protein.
Length = 729
Score = 65.3 bits (152), Expect = 2e-10
Identities = 28/89 (31%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +2
Query: 368 CRVLVTMGDVSEP-IKKCILILKNARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIG 544
C + + P +++ + L+ A++D+E+FAAL +VTK VK+ D ++ ++ +F+A+G
Sbjct: 22 CEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVG 81
Query: 545 FQFLKKLLTSNSVXDDCPPSVYKSVALSV 631
F F +LLT+ D CP V +++ +++
Sbjct: 82 FTFPNRLLTTKEAPDGCPDHVLRALGVAL 110
>AB011179-1|BAA25533.1| 731|Homo sapiens KIAA0607 protein protein.
Length = 731
Score = 65.3 bits (152), Expect = 2e-10
Identities = 28/89 (31%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +2
Query: 368 CRVLVTMGDVSEP-IKKCILILKNARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIG 544
C + + P +++ + L+ A++D+E+FAAL +VTK VK+ D ++ ++ +F+A+G
Sbjct: 24 CEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVG 83
Query: 545 FQFLKKLLTSNSVXDDCPPSVYKSVALSV 631
F F +LLT+ D CP V +++ +++
Sbjct: 84 FTFPNRLLTTKEAPDGCPDHVLRALGVAL 112
>BC047602-1|AAH47602.1| 1884|Homo sapiens RTTN protein protein.
Length = 1884
Score = 32.3 bits (70), Expect = 1.5
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = +2
Query: 374 VLVTMGDVSEPIKKCILILKNARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIGFQF 553
+L D +P+ CIL+L A SDTE+ + T +KS KK ++ +
Sbjct: 380 ILQGYADTEDPLGNCILLLSKASSDTEE---MLPCTTRLKSMLRLLLVKKPSVRSLALKL 436
Query: 554 LKKLLTSNSVXDDCPPSV 607
L LTS D P +
Sbjct: 437 LAFHLTSEEGADTKRPLI 454
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,395,382
Number of Sequences: 237096
Number of extensions: 1516946
Number of successful extensions: 2350
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2350
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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