Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e03
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.9  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 489 TSFVTINRAANFSVSLLAFFKMSMHFLIGSD 397
           TSFV  NRA  F +   +  K+S   ++G D
Sbjct: 354 TSFVLNNRAGRFLILTESDTKLSSQGILGED 384


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 348 GSTECAESQSDRSNSDSIHITFIIRVCSLP 259
           G+T   E   D S++D +H  +   VC  P
Sbjct: 257 GTTPLDEKPLDVSSNDKVHPLYGHGVCKWP 286


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 114 KGLPLELTSEPLLHAQHVDINVDH 185
           K + + + ++ +LH  +VD N DH
Sbjct: 401 KHIKVFVVNKDILHEHNVDDNEDH 424


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 459 NFSVSLLAFFKMSMHFLIGSDTSPIVTNTRHAHKTQ 352
           NF+ S    F M    +I     PI   T +AH+TQ
Sbjct: 701 NFNESKFIGFTMYTTCIIWLAFVPIYFGTGNAHETQ 736


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 459 NFSVSLLAFFKMSMHFLIGSDTSPIVTNTRHAHKTQ 352
           NF+ S    F M    +I     PI   T +AH+TQ
Sbjct: 791 NFNESKFIGFTMYTTCIIWLAFVPIYFGTGNAHETQ 826


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 224 ENVSSTSRFSYFGREHTLIINVMWIES 304
           E+V+    ++YF +  TLI N + +E+
Sbjct: 454 ESVNIDKLYTYFDKCDTLINNAVAVEN 480


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 224 ENVSSTSRFSYFGREHTLIINVMWIES 304
           E+V+    ++YF +  TLI N + +E+
Sbjct: 454 ESVNIDKLYTYFDKCDTLINNAVAVEN 480


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,129
Number of Sequences: 438
Number of extensions: 2794
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)