Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e03
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07706.1 68415.m00956 expressed protein                             30   1.1  
At1g29680.1 68414.m03627 expressed protein                             29   2.6  

>At2g07706.1 68415.m00956 expressed protein
          Length = 306

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = -2

Query: 259 KIAKSGRRAHVLLLCYSNYSSLERK*STLISTCCACSSGSEVSSKGKPLVY*MNQNRKIL 80
           KI  SG    V L  +S+++SL      LI T  +  S  +V  KG+PL+  + +  +  
Sbjct: 60  KIHLSGSFQAVRLALFSSFTSLRTDELLLIETRPSYLSSVQVWGKGRPLLLLLTKREQPA 119

Query: 79  LSAKNE 62
           L A  E
Sbjct: 120 LQANRE 125


>At1g29680.1 68414.m03627 expressed protein
          Length = 237

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 426 MSMHFLIGSDTSPIVTNTRHAHKTQ*GSTECAESQSDRSNSDSIHITFII 277
           +S   + G D S ++    + H+      +CA   SDRS++  I I ++I
Sbjct: 43  VSTFAIYGGDMSRLIGTHHYVHRVNDEFLQCAVYASDRSDAPLIGIEYVI 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,343,769
Number of Sequences: 28952
Number of extensions: 225955
Number of successful extensions: 443
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)