Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e02
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)                111   4e-25
SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)               111   4e-25
SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   4e-10
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   61   7e-10
SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)                57   1e-08
SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20)                53   2e-07
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              48   5e-06
SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)                39   0.004
SB_34637| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_1648| Best HMM Match : UPF0061 (HMM E-Value=5.2e-10)                29   4.3  
SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_49615| Best HMM Match : EAL (HMM E-Value=4e-36)                     28   7.5  
SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)                        28   7.5  
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            27   9.9  
SB_4908| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
          Length = 109

 Score =  111 bits (268), Expect = 4e-25
 Identities = 53/82 (64%), Positives = 65/82 (79%)
 Frame = +2

Query: 170 EMKLFTREELKSRSTRADAVLIIHNEVYDVTKFLLEHPGGEEVLLEKAGQDASEPFEDVS 349
           + KL+T +E+K+ +      L+IHN+V+DVTKFL EHPGGEEVLLE+AG DASE FEDV 
Sbjct: 6   DKKLYTFDEVKNHNKAGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVG 65

Query: 350 HSSDARSLMKKYKIGELVESDR 415
           HSSDAR LM +Y IGEL E+DR
Sbjct: 66  HSSDARELMNEYCIGELREADR 87


>SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
          Length = 172

 Score =  111 bits (268), Expect = 4e-25
 Identities = 53/82 (64%), Positives = 65/82 (79%)
 Frame = +2

Query: 170 EMKLFTREELKSRSTRADAVLIIHNEVYDVTKFLLEHPGGEEVLLEKAGQDASEPFEDVS 349
           + KL+T +E+K+ +      L+IHN+V+DVTKFL EHPGGEEVLLE+AG DASE FEDV 
Sbjct: 6   DKKLYTFDEVKNHNKAGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVG 65

Query: 350 HSSDARSLMKKYKIGELVESDR 415
           HSSDAR LM +Y IGEL E+DR
Sbjct: 66  HSSDARELMNEYCIGELREADR 87


>SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 31/62 (50%), Positives = 40/62 (64%)
 Frame = +2

Query: 176 KLFTREELKSRSTRADAVLIIHNEVYDVTKFLLEHPGGEEVLLEKAGQDASEPFEDVSHS 355
           K FT ++L   +T  +A L IH +VYDVT FLL HPGG+E+LL  AG+D +  FE     
Sbjct: 23  KTFTWQQLSRLNTEQNAHLAIHGKVYDVTNFLLRHPGGKELLLIGAGRDVTLVFETYHAF 82

Query: 356 SD 361
           SD
Sbjct: 83  SD 84


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 28/80 (35%), Positives = 49/80 (61%)
 Frame = +2

Query: 167  GEMKLFTREELKSRSTRADAVLIIHNEVYDVTKFLLEHPGGEEVLLEKAGQDASEPFEDV 346
            G + L   E+L++ +      ++IH +VYD+ +F  E P GE +L + A  DA++ FE+ 
Sbjct: 1226 GSLTLIRPEDLENHNKEGGMWVVIHGKVYDLKEFKEEAPCGESLLQKYAACDATKAFEEA 1285

Query: 347  SHSSDARSLMKKYKIGELVE 406
            +HS +AR +M+ + +G  VE
Sbjct: 1286 NHSYEARMMMQDHLVGTFVE 1305


>SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)
          Length = 167

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
 Frame = +2

Query: 182 FTREELKSRSTRADAVLIIHNEVYDVTKFLLEHPGGEEVLLEKAGQDASEPF---EDVSH 352
           F+REE+    +  D  +I   +VYD++KF   HPGG++VLL  +GQD +      E   H
Sbjct: 10  FSREEIGRHKSDGDLWVIHSGKVYDISKFSERHPGGKDVLLLNSGQDVTSIMSNGEIHKH 69

Query: 353 SSDARSLMKKYKIGEL 400
           S  A   +KKY IG L
Sbjct: 70  SQIAYGWLKKYNIGRL 85


>SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20)
          Length = 142

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 23/88 (26%), Positives = 51/88 (57%)
 Frame = +2

Query: 176 KLFTREELKSRSTRADAVLIIHNEVYDVTKFLLEHPGGEEVLLEKAGQDASEPFEDVSHS 355
           K++T +E+K   ++ D  +++ + VYD++K++  HPGGE  +L  AG++ ++ F+    +
Sbjct: 11  KVYTLDEVKEHCSKGDCWVVVEDSVYDLSKWIGHHPGGELPILYMAGRECTDVFKAFHPA 70

Query: 356 SDARSLMKKYKIGELVESDRVQTRAGFS 439
                 +  +KIG+L ++ + +     S
Sbjct: 71  WVFTKKLPAFKIGKLDDTRKEKKETSLS 98


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
 Frame = +2

Query: 176 KLFTREELKSRSTRADAVLIIHNE-VYDVTKFLLEHPGGEEVLLEKAGQDASEPF---ED 343
           K++++EE+   + R   + + +   VYD+T F+  HPGG   ++  AG  A EP+     
Sbjct: 202 KIYSKEEVSKHNNRKSRIWVTYKGGVYDITDFIDGHPGGTSKIILAAGA-ALEPYWAMYA 260

Query: 344 VSHSSDARSLMKKYKIGELVESDRV 418
           V    +   ++++Y+IG+L   D+V
Sbjct: 261 VHKKEEVLEILEEYRIGDLAHEDQV 285


>SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)
          Length = 303

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
 Frame = +2

Query: 176 KLFTREELKSRSTRADAVLIIHNE-VYDVTKFLLEHPGGEEVLLEKAGQ--DASEPFEDV 346
           + F+  E+   +     V   + + VYD+T F+ +HPGG+++++  AG   D      D 
Sbjct: 156 RTFSLSEVAKHTDARHGVWTTYEDGVYDLTDFIEQHPGGKKMIMLAAGSRLDPYWNIHDF 215

Query: 347 SHSSDARSLMKKYKIGELVESDRVQTRAGFS 439
               D   ++ +++IG L   ++++   G +
Sbjct: 216 HKRDDIVKILSEFRIGSL-RKEKIKASTGLN 245


>SB_34637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +2

Query: 320 DASEPFEDVSHSSDARSLMKKYKIGELVESDR 415
           DA++ FE+ +HS +AR +M+ + +G  VE ++
Sbjct: 3   DATKAFEEANHSYEARMMMQDHLVGTFVEPEQ 34


>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1994

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 29/101 (28%), Positives = 51/101 (50%)
 Frame = -2

Query: 519 AATPSSSGVSQELQLPCSCACSLVHCGLKPARVCTRSLSTNSPILYFFINDLASELWLTS 340
           A++ SSS  SQE  +  + + SL+  G+ P+     S S++SP     ++D A   +L+S
Sbjct: 581 ASSSSSSLSSQEHSVATTTSFSLIQEGVSPSG--NLSASSSSPST--SVSDAAVSSYLSS 636

Query: 339 SNGSEAS*PAFSRSTSSPPGCSRRNFVTS*TSLWIISTASA 217
              ++AS  A+  S SS    +  + V +     ++S  SA
Sbjct: 637 KPATDASSSAYDSSISSTESPNETSTVRA-NQTTVLSNVSA 676


>SB_1648| Best HMM Match : UPF0061 (HMM E-Value=5.2e-10)
          Length = 371

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +2

Query: 335 FEDVSHSSDARSLMKKYKIGELVESDRVQTRAGFSPQ--WTNEQAQEQGNWSSWL 493
           F  +  SS A   M   ++G L      Q   G  P   W  E+AQ+Q NW  WL
Sbjct: 229 FLQIMESSQADFTMTFRQLGNLTLGHIEQ---GVIPPGAWALEEAQQQKNWRDWL 280


>SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1450

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 23/68 (33%), Positives = 29/68 (42%)
 Frame = +2

Query: 302 LEKAGQDASEPFEDVSHSSDARSLMKKYKIGELVESDRVQTRAGFSPQWTNEQAQEQGNW 481
           LE+A Q      E+V +   ARSL+KK+        D  Q  A    Q   E   EQG  
Sbjct: 539 LERAVQVVLGLNEEVKNLDHARSLLKKHPTDRDAIQDYEQKLARVQTQVEREDRLEQGIQ 598

Query: 482 SSWLTPLL 505
           S  +  LL
Sbjct: 599 SENMRKLL 606


>SB_49615| Best HMM Match : EAL (HMM E-Value=4e-36)
          Length = 242

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 492 SQELQLPCSCACSLVHCGLKPARVCTRSLSTNS 394
           ++ L  PCSCAC+       P R   R L T S
Sbjct: 176 NETLSSPCSCACNTASAEHMPQRAVGRVLVTPS 208


>SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 726

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -2

Query: 216 RVDRDFSSSRVNNFISPSIIMFINLN*ITTLPPICL*LQIYF 91
           R+ R FS ++  +FISP   +FI L  I+ +  I L L+ YF
Sbjct: 537 RIARIFSGTKSPSFISPKSQLFITLLIISPVLTITL-LEFYF 577


>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 178 IVHARRTEVPVYAC*RRTNYPQRSLRRHKIPPR 276
           ++H+ RT +P Y   R  N P+ SL  +  PPR
Sbjct: 292 VIHSPRTPIPAYFTPRVHNSPRTSLPAYS-PPR 323


>SB_4908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1014

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +2

Query: 287 GEEVLLEKAGQDASEPFEDVSHSSDARSLMKKYKIGELVESDRVQTRAGFSPQWTNEQAQ 466
           G++V  E AG D  + FED + +    S       GE V+ DR + +   S   TN  A 
Sbjct: 471 GKKVETEGAGIDGDDEFEDEATTYSIHSEQAPSGSGE-VDKDRSEKQPVVSTVSTNAAAS 529

Query: 467 E 469
           E
Sbjct: 530 E 530


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,895,636
Number of Sequences: 59808
Number of extensions: 290914
Number of successful extensions: 692
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)