BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11e02 (649 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23) 111 4e-25 SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23) 111 4e-25 SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 4e-10 SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34) 61 7e-10 SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19) 57 1e-08 SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20) 53 2e-07 SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 48 5e-06 SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12) 39 0.004 SB_34637| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26 SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46 SB_1648| Best HMM Match : UPF0061 (HMM E-Value=5.2e-10) 29 4.3 SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7 SB_49615| Best HMM Match : EAL (HMM E-Value=4e-36) 28 7.5 SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0) 28 7.5 SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 27 9.9 SB_4908| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9 >SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23) Length = 109 Score = 111 bits (268), Expect = 4e-25 Identities = 53/82 (64%), Positives = 65/82 (79%) Frame = +2 Query: 170 EMKLFTREELKSRSTRADAVLIIHNEVYDVTKFLLEHPGGEEVLLEKAGQDASEPFEDVS 349 + KL+T +E+K+ + L+IHN+V+DVTKFL EHPGGEEVLLE+AG DASE FEDV Sbjct: 6 DKKLYTFDEVKNHNKAGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVG 65 Query: 350 HSSDARSLMKKYKIGELVESDR 415 HSSDAR LM +Y IGEL E+DR Sbjct: 66 HSSDARELMNEYCIGELREADR 87 >SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23) Length = 172 Score = 111 bits (268), Expect = 4e-25 Identities = 53/82 (64%), Positives = 65/82 (79%) Frame = +2 Query: 170 EMKLFTREELKSRSTRADAVLIIHNEVYDVTKFLLEHPGGEEVLLEKAGQDASEPFEDVS 349 + KL+T +E+K+ + L+IHN+V+DVTKFL EHPGGEEVLLE+AG DASE FEDV Sbjct: 6 DKKLYTFDEVKNHNKAGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVG 65 Query: 350 HSSDARSLMKKYKIGELVESDR 415 HSSDAR LM +Y IGEL E+DR Sbjct: 66 HSSDARELMNEYCIGELREADR 87 >SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 319 Score = 62.1 bits (144), Expect = 4e-10 Identities = 31/62 (50%), Positives = 40/62 (64%) Frame = +2 Query: 176 KLFTREELKSRSTRADAVLIIHNEVYDVTKFLLEHPGGEEVLLEKAGQDASEPFEDVSHS 355 K FT ++L +T +A L IH +VYDVT FLL HPGG+E+LL AG+D + FE Sbjct: 23 KTFTWQQLSRLNTEQNAHLAIHGKVYDVTNFLLRHPGGKELLLIGAGRDVTLVFETYHAF 82 Query: 356 SD 361 SD Sbjct: 83 SD 84 >SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34) Length = 1790 Score = 61.3 bits (142), Expect = 7e-10 Identities = 28/80 (35%), Positives = 49/80 (61%) Frame = +2 Query: 167 GEMKLFTREELKSRSTRADAVLIIHNEVYDVTKFLLEHPGGEEVLLEKAGQDASEPFEDV 346 G + L E+L++ + ++IH +VYD+ +F E P GE +L + A DA++ FE+ Sbjct: 1226 GSLTLIRPEDLENHNKEGGMWVVIHGKVYDLKEFKEEAPCGESLLQKYAACDATKAFEEA 1285 Query: 347 SHSSDARSLMKKYKIGELVE 406 +HS +AR +M+ + +G VE Sbjct: 1286 NHSYEARMMMQDHLVGTFVE 1305 >SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19) Length = 167 Score = 57.2 bits (132), Expect = 1e-08 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 3/76 (3%) Frame = +2 Query: 182 FTREELKSRSTRADAVLIIHNEVYDVTKFLLEHPGGEEVLLEKAGQDASEPF---EDVSH 352 F+REE+ + D +I +VYD++KF HPGG++VLL +GQD + E H Sbjct: 10 FSREEIGRHKSDGDLWVIHSGKVYDISKFSERHPGGKDVLLLNSGQDVTSIMSNGEIHKH 69 Query: 353 SSDARSLMKKYKIGEL 400 S A +KKY IG L Sbjct: 70 SQIAYGWLKKYNIGRL 85 >SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20) Length = 142 Score = 52.8 bits (121), Expect = 2e-07 Identities = 23/88 (26%), Positives = 51/88 (57%) Frame = +2 Query: 176 KLFTREELKSRSTRADAVLIIHNEVYDVTKFLLEHPGGEEVLLEKAGQDASEPFEDVSHS 355 K++T +E+K ++ D +++ + VYD++K++ HPGGE +L AG++ ++ F+ + Sbjct: 11 KVYTLDEVKEHCSKGDCWVVVEDSVYDLSKWIGHHPGGELPILYMAGRECTDVFKAFHPA 70 Query: 356 SDARSLMKKYKIGELVESDRVQTRAGFS 439 + +KIG+L ++ + + S Sbjct: 71 WVFTKKLPAFKIGKLDDTRKEKKETSLS 98 >SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) Length = 672 Score = 48.4 bits (110), Expect = 5e-06 Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 4/85 (4%) Frame = +2 Query: 176 KLFTREELKSRSTRADAVLIIHNE-VYDVTKFLLEHPGGEEVLLEKAGQDASEPF---ED 343 K++++EE+ + R + + + VYD+T F+ HPGG ++ AG A EP+ Sbjct: 202 KIYSKEEVSKHNNRKSRIWVTYKGGVYDITDFIDGHPGGTSKIILAAGA-ALEPYWAMYA 260 Query: 344 VSHSSDARSLMKKYKIGELVESDRV 418 V + ++++Y+IG+L D+V Sbjct: 261 VHKKEEVLEILEEYRIGDLAHEDQV 285 >SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12) Length = 303 Score = 38.7 bits (86), Expect = 0.004 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 3/91 (3%) Frame = +2 Query: 176 KLFTREELKSRSTRADAVLIIHNE-VYDVTKFLLEHPGGEEVLLEKAGQ--DASEPFEDV 346 + F+ E+ + V + + VYD+T F+ +HPGG+++++ AG D D Sbjct: 156 RTFSLSEVAKHTDARHGVWTTYEDGVYDLTDFIEQHPGGKKMIMLAAGSRLDPYWNIHDF 215 Query: 347 SHSSDARSLMKKYKIGELVESDRVQTRAGFS 439 D ++ +++IG L ++++ G + Sbjct: 216 HKRDDIVKILSEFRIGSL-RKEKIKASTGLN 245 >SB_34637| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 202 Score = 32.7 bits (71), Expect = 0.26 Identities = 12/32 (37%), Positives = 23/32 (71%) Frame = +2 Query: 320 DASEPFEDVSHSSDARSLMKKYKIGELVESDR 415 DA++ FE+ +HS +AR +M+ + +G VE ++ Sbjct: 3 DATKAFEEANHSYEARMMMQDHLVGTFVEPEQ 34 >SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1994 Score = 31.9 bits (69), Expect = 0.46 Identities = 29/101 (28%), Positives = 51/101 (50%) Frame = -2 Query: 519 AATPSSSGVSQELQLPCSCACSLVHCGLKPARVCTRSLSTNSPILYFFINDLASELWLTS 340 A++ SSS SQE + + + SL+ G+ P+ S S++SP ++D A +L+S Sbjct: 581 ASSSSSSLSSQEHSVATTTSFSLIQEGVSPSG--NLSASSSSPST--SVSDAAVSSYLSS 636 Query: 339 SNGSEAS*PAFSRSTSSPPGCSRRNFVTS*TSLWIISTASA 217 ++AS A+ S SS + + V + ++S SA Sbjct: 637 KPATDASSSAYDSSISSTESPNETSTVRA-NQTTVLSNVSA 676 >SB_1648| Best HMM Match : UPF0061 (HMM E-Value=5.2e-10) Length = 371 Score = 28.7 bits (61), Expect = 4.3 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Frame = +2 Query: 335 FEDVSHSSDARSLMKKYKIGELVESDRVQTRAGFSPQ--WTNEQAQEQGNWSSWL 493 F + SS A M ++G L Q G P W E+AQ+Q NW WL Sbjct: 229 FLQIMESSQADFTMTFRQLGNLTLGHIEQ---GVIPPGAWALEEAQQQKNWRDWL 280 >SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1450 Score = 28.3 bits (60), Expect = 5.7 Identities = 23/68 (33%), Positives = 29/68 (42%) Frame = +2 Query: 302 LEKAGQDASEPFEDVSHSSDARSLMKKYKIGELVESDRVQTRAGFSPQWTNEQAQEQGNW 481 LE+A Q E+V + ARSL+KK+ D Q A Q E EQG Sbjct: 539 LERAVQVVLGLNEEVKNLDHARSLLKKHPTDRDAIQDYEQKLARVQTQVEREDRLEQGIQ 598 Query: 482 SSWLTPLL 505 S + LL Sbjct: 599 SENMRKLL 606 >SB_49615| Best HMM Match : EAL (HMM E-Value=4e-36) Length = 242 Score = 27.9 bits (59), Expect = 7.5 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = -2 Query: 492 SQELQLPCSCACSLVHCGLKPARVCTRSLSTNS 394 ++ L PCSCAC+ P R R L T S Sbjct: 176 NETLSSPCSCACNTASAEHMPQRAVGRVLVTPS 208 >SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0) Length = 726 Score = 27.9 bits (59), Expect = 7.5 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = -2 Query: 216 RVDRDFSSSRVNNFISPSIIMFINLN*ITTLPPICL*LQIYF 91 R+ R FS ++ +FISP +FI L I+ + I L L+ YF Sbjct: 537 RIARIFSGTKSPSFISPKSQLFITLLIISPVLTITL-LEFYF 577 >SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) Length = 797 Score = 27.5 bits (58), Expect = 9.9 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +1 Query: 178 IVHARRTEVPVYAC*RRTNYPQRSLRRHKIPPR 276 ++H+ RT +P Y R N P+ SL + PPR Sbjct: 292 VIHSPRTPIPAYFTPRVHNSPRTSLPAYS-PPR 323 >SB_4908| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1014 Score = 27.5 bits (58), Expect = 9.9 Identities = 20/61 (32%), Positives = 28/61 (45%) Frame = +2 Query: 287 GEEVLLEKAGQDASEPFEDVSHSSDARSLMKKYKIGELVESDRVQTRAGFSPQWTNEQAQ 466 G++V E AG D + FED + + S GE V+ DR + + S TN A Sbjct: 471 GKKVETEGAGIDGDDEFEDEATTYSIHSEQAPSGSGE-VDKDRSEKQPVVSTVSTNAAAS 529 Query: 467 E 469 E Sbjct: 530 E 530 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,895,636 Number of Sequences: 59808 Number of extensions: 290914 Number of successful extensions: 692 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 659 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 689 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1645141000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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