Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d24
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      31   0.11 
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    27   1.8  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   3.1  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   5.4  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   7.2  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   7.2  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   7.2  
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch...    25   9.5  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   9.5  

>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 404 FNMKEELEEGHFDTQGHYHWKK-EKEIR-DGWLD 499
           FN+KE++EEG FD  G++  K  + E + D WL+
Sbjct: 162 FNLKEDMEEGDFDENGNFIRKNYDPESQYDAWLN 195


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 25  LDRHKNIDFIDSVPNTRQQTHNHN 96
           L  H+N+ F +S+P    Q HN++
Sbjct: 474 LSCHRNLSFSESLPTAEDQVHNNH 497


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 470 EKEIRDGWLDNIDWVKVKGRPEDKYKIXHSD 562
           E   +  W+  +D +K K + ED YK  H D
Sbjct: 447 ENSFQKAWISLMDKLKKKEKDEDVYKDVHFD 477


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -3

Query: 271 LAILRGLFYFVY*CFGSGTL*HFGKVT**YFGRLFLNR*TQIE*IRFN*VGTRLVP 104
           L +L  +FY +Y CFG+ +    G +   Y   LF N  + I  I+   +G  L P
Sbjct: 27  LLVLSLIFYILYICFGTTSYILSGIILGAYVNSLFHNNHSVILNIKHPELGEPLKP 82


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 65  LTHGNRHTITIKKRYQPCTNLVESDSLNLSSPIQEKAPKILLGY 196
           LT  N H  +  K ++ C N    D +NLS+ ++    K LL Y
Sbjct: 712 LTILNLHDRSQLKLFEVCHNSEFKDPINLSNCLRNLLEKQLLSY 755


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 86  TITIKKRYQPCTNLVESDSLNLSSPIQEK 172
           T+TI+K  +  TN +  +   LSS ++ K
Sbjct: 500 TVTIRKPIESSTNKISENPTTLSSKVENK 528


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -3

Query: 571  SFFIAMXNFIFILWSTFYFNPVNVIKPSITNFFFFF--PMVMSLCIKMPFFKFFFHVK 404
            S F+     I  L  T++  P      SI  F  F   P++ +L   + F KFF+ V+
Sbjct: 1031 SNFLTWEIIISDLTRTYHLIPRGSSTVSIILFSLFLVSPLICALATMLAFQKFFYQVR 1088


>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 94

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = +2

Query: 56  IAYLTHGNRHTITIKKRYQPCTNLVESDSLNLSSPIQEKAPKILLGYFTKMSKRPASEAL 235
           +  +T+  R  +   K +   TNL+ SDS      + +    I LG +    +  A   L
Sbjct: 11  VQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRGENVAMVGL 70

Query: 236 IDE 244
           ++E
Sbjct: 71  VNE 73


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 140  SLNLSSPIQEKAPKILLGYFTKMSK 214
            SL+  SP  + A  ILLGYF K+ K
Sbjct: 1169 SLDFISPECDDAYVILLGYFQKLLK 1193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,308
Number of Sequences: 5004
Number of extensions: 36448
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)