Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d24
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09390.1 68418.m01088 CD2-binding protein-related similar to ...    43   2e-04
At1g72760.1 68414.m08413 protein kinase family protein contains ...    31   0.88 
At4g31040.1 68417.m04408 proton extrusion protein-related contai...    28   6.2  
At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein ...    27   8.2  

>At5g09390.1 68418.m01088 CD2-binding protein-related similar to CD2
           cytoplasmic domain binding protein [Homo sapiens]
           GI:3983427
          Length = 351

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 16/36 (44%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = +2

Query: 404 FNMKEELEEGHFDTQGHY-HWKKEKEIRDGWLDNID 508
           F++  E EEG+FD  G++  + +EKE++D WLD+I+
Sbjct: 103 FSLDREKEEGYFDADGNFVEYVREKEVKDAWLDSIE 138


>At1g72760.1 68414.m08413 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 697

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 119 TNLVESDSLNLSSPIQEKAPKILLGYFTKMSKRPASEALIDEVKKATKD 265
           TN ++SDS ++SSP+  +  K    +F   S R ++   + E+ ++  D
Sbjct: 179 TNSIDSDSASISSPVSTQTNKPNSNFFQPNSPRISTPQSMSEISQSETD 227


>At4g31040.1 68417.m04408 proton extrusion protein-related contains
           weak similarity to Proton extrusion protein pcxA
           (Swiss-Prot:P75028) [Synechocystis sp.]
          Length = 438

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 508 VNVIKPSITNFFFFFPMVMSLCIKMPFFKF 419
           + V + +IT F    P++M  C+K+  FKF
Sbjct: 391 LEVEQSTITIFICLVPVIMDACVKLWLFKF 420


>At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 361

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 20/101 (19%), Positives = 43/101 (42%)
 Frame = +2

Query: 38  KTLISLIAYLTHGNRHTITIKKRYQPCTNLVESDSLNLSSPIQEKAPKILLGYFTKMSKR 217
           +  +SL A   H   H   +KK      +  +++S   S+P+++++ ++++      S  
Sbjct: 71  RVFVSLKALRGHMACHG-EVKKMLMDDNSQSDTESETSSAPMRKRSKRVVMKQSNSESLS 129

Query: 218 PASEALIDEVKKATKDGKKHXXXXXXXXXXXXXXKNNVMNS 340
             S +   E+ +  +DG  +              +N VMNS
Sbjct: 130 NGSSSFGSEIDQERRDGAYNLMMLSSDSSSFKKRRNMVMNS 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,270,826
Number of Sequences: 28952
Number of extensions: 177421
Number of successful extensions: 523
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)