Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11d22
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0689 - 5287110-5287209,5287444-5287691,5287935-5288107,528... 30 1.3
03_02_0990 - 13028011-13028114,13028182-13028554,13029488-130296... 29 2.3
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492... 28 5.4
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 27 7.1
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 27 9.4
07_03_0502 + 18826595-18826660,18826815-18826885,18828963-188290... 27 9.4
03_01_0039 - 348800-348912,349201-349279,349513-349687,350126-35... 27 9.4
>01_01_0689 -
5287110-5287209,5287444-5287691,5287935-5288107,
5288913-5289060,5289537-5289696,5290021-5290166,
5290963-5291191,5291901-5292123,5292253-5292401,
5293501-5293670,5294188-5294259,5294363-5294443,
5296180-5296311,5296381-5296468,5296841-5297054,
5297501-5297684,5298069-5298152,5299002-5299131,
5299280-5299650,5299684-5299967,5300932-5301247
Length = 1233
Score = 29.9 bits (64), Expect = 1.3
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Frame = +2
Query: 242 PCNQLATA-QNYVASNNQYQPLISSINPNEIVKVILSRVLTSPHVHRVEVPEVKPQHNPD 418
PC + + QNY+ ++ QP+IS+ P V S S + + P V P +P
Sbjct: 223 PCRCMPSGLQNYIEIDSPIQPMIST--PRR-VSTPSSVQDISRLIENMAGPSVSPP-SPI 278
Query: 419 AKEPIN-TNVPHVVNNYF--IVSPEYLKLNETVFKKV 520
P N T H +N SP+ L L E F+K+
Sbjct: 279 TAMPQNPTTTCHTTDNALREAASPQMLALEELGFRKI 315
>03_02_0990 -
13028011-13028114,13028182-13028554,13029488-13029631,
13030389-13030396,13030634-13030711,13030968-13031132,
13031414-13031471
Length = 309
Score = 29.1 bits (62), Expect = 2.3
Identities = 26/105 (24%), Positives = 41/105 (39%)
Frame = +2
Query: 200 YTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISSINPNEIVKVILSRVLTSPHVHR 379
Y ++TP+ + C+Q A Y S + S + PN VK R P
Sbjct: 83 YAFFKPSWTPNTTVTCDQEYQALAYPWSAKETPAYSSMMLPN--VKDYKGRTWLLPLAAY 140
Query: 380 VEVPEVKPQHNPDAKEPINTNVPHVVNNYFIVSPEYLKLNETVFK 514
+ P Q P + N PH N+++ + YL+ T F+
Sbjct: 141 LYNPWSTQQTKPAVRSDFNNYPPHSSNHHW-MEVSYLEPCTTDFR 184
>05_07_0093 -
27648656-27648736,27649034-27649147,27649229-27649288,
27649464-27649687,27649799-27649886,27650326-27650532,
27650566-27650784,27650903-27651001,27651439-27651504,
27651654-27651737,27651829-27651888,27652041-27652325,
27652789-27652836,27652988-27653034,27653442-27653556,
27653958-27654032,27654227-27654298,27654944-27656124,
27656613-27656757
Length = 1089
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +2
Query: 203 TQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISSINPNEIVKVILSRVLTSPHVHR- 379
+Q ++T P+ + ++ + + + Q + LISS P + K +S L +P +
Sbjct: 96 SQSASTEAPTSKVDASEESESTQSPKPSEQGETLISSTEP-PVSKAEVSEQLATPKTPKS 154
Query: 380 VEVPEVKPQHNPDA 421
+ E KP H+ ++
Sbjct: 155 LSATEEKPSHSTES 168
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 386 VPEVKPQHNP-DAKEPINTNVPHVVNNYFIVSPEYL 490
VP NP D ++ + NV HV+ ++SP YL
Sbjct: 3639 VPVAAGMINPLDFQQKVINNVEHVITRIKLISPHYL 3674
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Frame = +2
Query: 284 NNQYQPLISSINPNEIVKVILSRVLTSPHVHRV----EVPEVKPQHNPDAKEP--INTNV 445
NN+ S+NP ++ +L+R+ T +V V E PE+KP+ EP +T
Sbjct: 591 NNERIRPTESVNPKDMSLSLLNRITTGNNVVGVPGPLESPEIKPRLFGVTAEPQQRSTEA 650
Query: 446 PHVVNNY 466
P + N+
Sbjct: 651 PSLHENH 657
>07_03_0502 +
18826595-18826660,18826815-18826885,18828963-18829056,
18829575-18831521
Length = 725
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 82 MLAKDEFYXXXXXXXEFFGDRNPASHCTSSDPTFVSNQWIYSAV*HLHAIQKHP 243
++AK+E + +RN H S+ P VS+++I S V L I++ P
Sbjct: 481 LIAKEEGAMFLMLLWRIWYNRNEIYHGKSAPPVSVSHRFIVSYVSSLREIKQFP 534
>03_01_0039 -
348800-348912,349201-349279,349513-349687,350126-350232,
350294-350374,350783-351082,351178-351230,351357-351494,
351767-351917,352602-352809,352881-352939
Length = 487
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +2
Query: 191 TNGYTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISSINPNEIVKVILSRVLTSPH 370
+NG+TQ++ T + P N+ A ++++ Y ++ + P KV +V +P
Sbjct: 339 SNGWTQINQTPVAAGRSPMNRAPVAAGRLSAHLVYPAKVTDLKP----KVEQGKVKAAPQ 394
Query: 371 -VHRVEVPEVKPQHNPDAKEPINTNVP 448
V P+ A +N VP
Sbjct: 395 KPFASSYYRVAPKQEEVAIRKVNIQVP 421
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,858,577
Number of Sequences: 37544
Number of extensions: 179562
Number of successful extensions: 386
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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