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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d22
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0689 - 5287110-5287209,5287444-5287691,5287935-5288107,528...    30   1.3  
03_02_0990 - 13028011-13028114,13028182-13028554,13029488-130296...    29   2.3  
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492...    28   5.4  
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342...    27   7.1  
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362...    27   9.4  
07_03_0502 + 18826595-18826660,18826815-18826885,18828963-188290...    27   9.4  
03_01_0039 - 348800-348912,349201-349279,349513-349687,350126-35...    27   9.4  

>01_01_0689 -
           5287110-5287209,5287444-5287691,5287935-5288107,
           5288913-5289060,5289537-5289696,5290021-5290166,
           5290963-5291191,5291901-5292123,5292253-5292401,
           5293501-5293670,5294188-5294259,5294363-5294443,
           5296180-5296311,5296381-5296468,5296841-5297054,
           5297501-5297684,5298069-5298152,5299002-5299131,
           5299280-5299650,5299684-5299967,5300932-5301247
          Length = 1233

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
 Frame = +2

Query: 242 PCNQLATA-QNYVASNNQYQPLISSINPNEIVKVILSRVLTSPHVHRVEVPEVKPQHNPD 418
           PC  + +  QNY+  ++  QP+IS+  P   V    S    S  +  +  P V P  +P 
Sbjct: 223 PCRCMPSGLQNYIEIDSPIQPMIST--PRR-VSTPSSVQDISRLIENMAGPSVSPP-SPI 278

Query: 419 AKEPIN-TNVPHVVNNYF--IVSPEYLKLNETVFKKV 520
              P N T   H  +N      SP+ L L E  F+K+
Sbjct: 279 TAMPQNPTTTCHTTDNALREAASPQMLALEELGFRKI 315


>03_02_0990 -
           13028011-13028114,13028182-13028554,13029488-13029631,
           13030389-13030396,13030634-13030711,13030968-13031132,
           13031414-13031471
          Length = 309

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 26/105 (24%), Positives = 41/105 (39%)
 Frame = +2

Query: 200 YTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISSINPNEIVKVILSRVLTSPHVHR 379
           Y     ++TP+  + C+Q   A  Y  S  +     S + PN  VK    R    P    
Sbjct: 83  YAFFKPSWTPNTTVTCDQEYQALAYPWSAKETPAYSSMMLPN--VKDYKGRTWLLPLAAY 140

Query: 380 VEVPEVKPQHNPDAKEPINTNVPHVVNNYFIVSPEYLKLNETVFK 514
           +  P    Q  P  +   N   PH  N+++ +   YL+   T F+
Sbjct: 141 LYNPWSTQQTKPAVRSDFNNYPPHSSNHHW-MEVSYLEPCTTDFR 184


>05_07_0093 -
           27648656-27648736,27649034-27649147,27649229-27649288,
           27649464-27649687,27649799-27649886,27650326-27650532,
           27650566-27650784,27650903-27651001,27651439-27651504,
           27651654-27651737,27651829-27651888,27652041-27652325,
           27652789-27652836,27652988-27653034,27653442-27653556,
           27653958-27654032,27654227-27654298,27654944-27656124,
           27656613-27656757
          Length = 1089

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +2

Query: 203 TQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISSINPNEIVKVILSRVLTSPHVHR- 379
           +Q ++T  P+  +  ++ + +      + Q + LISS  P  + K  +S  L +P   + 
Sbjct: 96  SQSASTEAPTSKVDASEESESTQSPKPSEQGETLISSTEP-PVSKAEVSEQLATPKTPKS 154

Query: 380 VEVPEVKPQHNPDA 421
           +   E KP H+ ++
Sbjct: 155 LSATEEKPSHSTES 168


>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
            26834330-26834732,26834840-26835118,26835285-26835716,
            26836362-26836838,26837171-26837212,26837285-26837545,
            26837637-26838938,26839146-26839575,26839643-26840046,
            26840360-26840716,26840842-26841102,26841494-26842141,
            26842231-26842452,26842547-26842768,26842860-26843009,
            26843739-26844111,26844467-26844689,26845167-26845425,
            26845585-26845920,26846013-26846999,26848395-26849624,
            26849706-26849768,26849858-26849910,26849998-26850079,
            26850520-26850588,26851070-26851129,26851205-26851267,
            26851993-26852101,26852742-26852827,26853120-26853847,
            26854613-26854676
          Length = 3716

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 386  VPEVKPQHNP-DAKEPINTNVPHVVNNYFIVSPEYL 490
            VP      NP D ++ +  NV HV+    ++SP YL
Sbjct: 3639 VPVAAGMINPLDFQQKVINNVEHVITRIKLISPHYL 3674


>07_03_0562 +
           19535801-19535865,19535972-19536017,19536125-19536223,
           19536588-19536674,19537545-19537613,19537702-19538710,
           19539217-19539365,19539453-19540487,19540488-19541003
          Length = 1024

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
 Frame = +2

Query: 284 NNQYQPLISSINPNEIVKVILSRVLTSPHVHRV----EVPEVKPQHNPDAKEP--INTNV 445
           NN+      S+NP ++   +L+R+ T  +V  V    E PE+KP+      EP   +T  
Sbjct: 591 NNERIRPTESVNPKDMSLSLLNRITTGNNVVGVPGPLESPEIKPRLFGVTAEPQQRSTEA 650

Query: 446 PHVVNNY 466
           P +  N+
Sbjct: 651 PSLHENH 657


>07_03_0502 +
           18826595-18826660,18826815-18826885,18828963-18829056,
           18829575-18831521
          Length = 725

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 82  MLAKDEFYXXXXXXXEFFGDRNPASHCTSSDPTFVSNQWIYSAV*HLHAIQKHP 243
           ++AK+E           + +RN   H  S+ P  VS+++I S V  L  I++ P
Sbjct: 481 LIAKEEGAMFLMLLWRIWYNRNEIYHGKSAPPVSVSHRFIVSYVSSLREIKQFP 534


>03_01_0039 -
           348800-348912,349201-349279,349513-349687,350126-350232,
           350294-350374,350783-351082,351178-351230,351357-351494,
           351767-351917,352602-352809,352881-352939
          Length = 487

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = +2

Query: 191 TNGYTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISSINPNEIVKVILSRVLTSPH 370
           +NG+TQ++ T   +   P N+   A   ++++  Y   ++ + P    KV   +V  +P 
Sbjct: 339 SNGWTQINQTPVAAGRSPMNRAPVAAGRLSAHLVYPAKVTDLKP----KVEQGKVKAAPQ 394

Query: 371 -VHRVEVPEVKPQHNPDAKEPINTNVP 448
                    V P+    A   +N  VP
Sbjct: 395 KPFASSYYRVAPKQEEVAIRKVNIQVP 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,858,577
Number of Sequences: 37544
Number of extensions: 179562
Number of successful extensions: 386
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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