Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d22
         (532 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47130| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)            28   4.1  
SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   9.5  
SB_45116| Best HMM Match : EGF (HMM E-Value=0)                         27   9.5  
SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_47130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 24/88 (27%), Positives = 36/88 (40%)
 Frame = +2

Query: 185 YQTNGYTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISSINPNEIVKVILSRVLTS 364
           ++T  Y Q   T TP+ N+P   L T   Y    +Q +   ++  P    K   +RV   
Sbjct: 16  HRTQMYQQ--GTSTPNTNVPTGYLNTEHKYTNKVSQPEHKYTNRVPQPEHK-CTNRVPQP 72

Query: 365 PHVHRVEVPEVKPQHNPDAKEPINTNVP 448
            H     VP+ + Q         +TNVP
Sbjct: 73  EHKCTNRVPQHRTQMYQQGTSTPDTNVP 100


>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
          Length = 652

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 296 QPLISSINPNEIVKVILSRVLTSP 367
           QP +S+  PN++VK  ++ V+T P
Sbjct: 545 QPSVSTTKPNDVVKTHMTSVVTKP 568


>SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1296

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 233 WMACKC*TAEYIHWFDTKVGSEL 165
           W+ACKC + E + + + K G  L
Sbjct: 297 WVACKCKSGEILFYHNPKTGEHL 319


>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2023

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 401 PQHNPDAKEPINTNVPHVVNNYFIVS 478
           P   P+   P+NT  PH V+  FIV+
Sbjct: 470 PSIAPETALPVNTASPHTVHREFIVT 495


>SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1095

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 431 INTNVPHVVNNYFIVS 478
           +N N+ HVV++YFIVS
Sbjct: 57  VNANLRHVVSSYFIVS 72


>SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 191 TNGYTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISS-INPN 325
           TNG+ QL  +  P+ + P  +  T +++  +NN +    ++  NPN
Sbjct: 276 TNGHFQLDESVFPNSDSPDTRDQTVESFEINNNDFSSQENAQSNPN 321


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,154,432
Number of Sequences: 59808
Number of extensions: 221873
Number of successful extensions: 546
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)