Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d21
         (559 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    23   2.4  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   5.4  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.5  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.5  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.5  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.5  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.5  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 548 TTLLPFTFWKFCNT 507
           T+L PF+ W  CN+
Sbjct: 360 TSLRPFSRWSLCNS 373


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 319 DSLSFCNRAVVENC 278
           D+  FCN + V NC
Sbjct: 485 DAKMFCNESSVSNC 498


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 190 FTSQHFNVKFLEFTQFVNSLMLMTN 116
           F  QH ++KF  +T   N L L+ N
Sbjct: 137 FDDQHCDMKFGSWTYDGNQLDLVLN 161


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 190 FTSQHFNVKFLEFTQFVNSLMLMTN 116
           F  QH ++KF  +T   N L L+ N
Sbjct: 137 FDDQHCDMKFGSWTYDGNQLDLVLN 161


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 190 FTSQHFNVKFLEFTQFVNSLMLMTN 116
           F  QH ++KF  +T   N L L+ N
Sbjct: 137 FDDQHCDMKFGSWTYDGNQLDLVLN 161


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 190 FTSQHFNVKFLEFTQFVNSLMLMTN 116
           F  QH ++KF  +T   N L L+ N
Sbjct: 137 FDDQHCDMKFGSWTYDGNQLDLVLN 161


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 190 FTSQHFNVKFLEFTQFVNSLMLMTN 116
           F  QH ++KF  +T   N L L+ N
Sbjct: 137 FDDQHCDMKFGSWTYDGNQLDLVLN 161


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,688
Number of Sequences: 336
Number of extensions: 1833
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)