Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d21
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    44   2e-05
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   2.5  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   2.5  
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...    25   7.5  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   10.0 

>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 24/74 (32%), Positives = 39/74 (52%)
 Frame = +1

Query: 316 SQLAVLKLYNIVVDDVISGVRNSFLDDGVDEQVLQELKQLWKTKLQASGATDXXXXXXXX 495
           S   V ++Y+ V+ DVI+  R+ F ++GVD+  L+EL+ LW++KL A+            
Sbjct: 2   SNSIVGEVYHHVILDVIANSRSDFEENGVDDATLRELQNLWQSKLVATDVATFPWAQAPV 61

Query: 496 XXXXXXQNFQKVNG 537
                 Q F  V+G
Sbjct: 62  GTFPIGQLFDPVSG 75


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 155 FQKFDIEMLRCELRRQIIGSKLN 223
           F   DI  +  ELR Q++G +LN
Sbjct: 5   FSALDIAAIAAELREQVVGCRLN 27


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 210 PIICLLSSHRNISMSNFWNS 151
           P+IC +SSH N + SN + +
Sbjct: 541 PVICSVSSHTNFTFSNVYKA 560


>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 289 LQLDCKMTTSQLAVLKLYNIVVDDVISG 372
           L LDC  T S   +L  Y++V   VISG
Sbjct: 211 LLLDCMSTFSSTELLPYYDVVRYAVISG 238


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -2

Query: 306  FAIEL*LKIV*QCKMFTELDILVSKSV*FSLEPIICLLSSHRNISMSNFW 157
            F  E   K+V +  +F  +D ++S  + FSL PI+C+       S+  FW
Sbjct: 1695 FIREFMCKVV-EMNLFA-MDFILSHCILFSLTPILCIPFIDIPHSVLLFW 1742


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,908,822
Number of Sequences: 5004
Number of extensions: 31367
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)