Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d21
         (559 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0343 + 12732673-12732792,12732903-12733091,12733220-127333...    45   4e-05
08_02_0955 + 22994266-22995630                                         31   0.62 
04_04_1312 + 32565447-32565585,32566008-32566060,32566139-325667...    28   4.4  
04_04_1311 - 32559549-32559674,32559761-32560078,32560158-325602...    28   4.4  
01_01_0589 + 4394154-4394513,4394641-4394762,4394862-4395057,439...    27   7.7  

>05_03_0343 +
           12732673-12732792,12732903-12733091,12733220-12733387,
           12733468-12733522,12733646-12733704,12734784-12734909,
           12737281-12737409,12737486-12737540,12737633-12737808,
           12737903-12737986,12738602-12738625
          Length = 394

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 22/46 (47%), Positives = 30/46 (65%)
 Frame = +1

Query: 328 VLKLYNIVVDDVISGVRNSFLDDGVDEQVLQELKQLWKTKLQASGA 465
           V  +Y  V+DDVIS VR+ F+  GV + VL EL+ LW+ K+   GA
Sbjct: 6   VSTVYISVIDDVISKVRDDFISYGVGDAVLNELQALWEMKMLHCGA 51


>08_02_0955 + 22994266-22995630
          Length = 454

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
 Frame = +1

Query: 271 LLNNFQLQLDCKMTTSQLA--VLKL---YNIVVDDVISGVRNSFLDDGVDEQVLQELKQL 435
           L N  + QL  K +T+QL+  V +L   YN+++  V    R+  L    D +V +  K++
Sbjct: 225 LHNMIRGQLSVKASTTQLSDKVRRLKHKYNLILTRVTKSGRDPDLPTEHDREVYELSKKV 284

Query: 436 WKTKLQASGA 465
           W TK   +GA
Sbjct: 285 WGTKSGGAGA 294


>04_04_1312 +
           32565447-32565585,32566008-32566060,32566139-32566771,
           32566844-32566972,32567052-32567144,32567220-32567336,
           32567412-32567512,32567603-32567870,32568236-32568265,
           32568361-32568572,32568650-32568731,32568804-32569555,
           32569640-32569811,32570412-32570498,32570578-32570895,
           32570982-32571107
          Length = 1103

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 143 KLCEFQKFDIEMLRCELRRQIIGSKLN*TDLETRIS 250
           ++CE  K  +E +R E    ++  KLN  D E +IS
Sbjct: 613 QICEINKDMVEKIRIETAVDLVNHKLNKRDEEEKIS 648


>04_04_1311 -
           32559549-32559674,32559761-32560078,32560158-32560244,
           32560845-32561016,32561101-32561852,32561925-32562006,
           32562084-32562295,32562391-32562420,32562786-32563074,
           32563143-32563243,32563319-32563435,32563511-32563603,
           32563683-32563811,32563884-32564516,32564765-32564844,
           32565152-32565164
          Length = 1077

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 143 KLCEFQKFDIEMLRCELRRQIIGSKLN*TDLETRIS 250
           ++CE  K  +E +R E    ++  KLN  D E +IS
Sbjct: 587 QICEINKDMVEKIRIETAVDLVNHKLNKRDEEEKIS 622


>01_01_0589 +
           4394154-4394513,4394641-4394762,4394862-4395057,
           4395275-4395392,4395499-4395546,4395691-4395791,
           4395893-4396000
          Length = 350

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 361 VISGVRNSFLDDGVDEQVLQELKQLWKTKLQASGA 465
           +ISG  N  +D    E   Q   Q WKTK Q  G+
Sbjct: 313 IISGHVNKNIDFEYQEYARQRFDQYWKTKDQTLGS 347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,875,220
Number of Sequences: 37544
Number of extensions: 163638
Number of successful extensions: 345
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)