Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d21
         (559 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47758| Best HMM Match : TFIIA (HMM E-Value=2.7e-18)                 62   3e-10
SB_28844| Best HMM Match : SpoVT_AbrB (HMM E-Value=4.7)                30   1.1  

>SB_47758| Best HMM Match : TFIIA (HMM E-Value=2.7e-18)
          Length = 296

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 27/46 (58%), Positives = 37/46 (80%)
 Frame = +1

Query: 334 KLYNIVVDDVISGVRNSFLDDGVDEQVLQELKQLWKTKLQASGATD 471
           KLY  V++DVI  V+ +FL++GVD+QVLQELKQ+W++KL  S A D
Sbjct: 19  KLYRNVIEDVIKNVKEAFLNEGVDDQVLQELKQIWESKLLQSRAVD 64


>SB_28844| Best HMM Match : SpoVT_AbrB (HMM E-Value=4.7)
          Length = 592

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 262 HFTLLNNFQLQLDCKMTTSQLAVLKLYNIVVDDVIS-GVRNSFLDDGVDEQVLQELKQL 435
           H+ +L +F  +  C     Q   L L ++    +IS G  +SF+ D  DEQVL+ LK++
Sbjct: 112 HYMMLASFACRDTCFCQHHQNMALLLRSMKRKLLISTGNPDSFIKDNTDEQVLEILKKI 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,378,071
Number of Sequences: 59808
Number of extensions: 214421
Number of successful extensions: 451
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)