Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d21
         (559 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039047-11|AAB94230.1|  354|Caenorhabditis elegans Prion-like-(...    47   8e-06
Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical p...    30   0.98 
Z27079-7|CAA81592.1|  293|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical pr...    27   6.9  

>AF039047-11|AAB94230.1|  354|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 51
           protein.
          Length = 354

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 18/48 (37%), Positives = 33/48 (68%)
 Frame = +1

Query: 328 VLKLYNIVVDDVISGVRNSFLDDGVDEQVLQELKQLWKTKLQASGATD 471
           + +LY  V+ DVI+ ++ +FLD+ +D  VL +L++ W+ K+ +SG  D
Sbjct: 7   IAELYKSVMADVIANMKEAFLDENIDVDVLSQLRKEWEDKVNSSGCVD 54


>Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical
           protein Y41E3.15 protein.
          Length = 327

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 17  FYGEFINLSLFM*MDVIKVKISYFSHILS*IY 112
           F    +N++L    D+I+ K++YFS ILS IY
Sbjct: 129 FINRIVNITLPQYSDLIEAKLAYFSIILSIIY 160


>Z27079-7|CAA81592.1|  293|Caenorhabditis elegans Hypothetical
           protein T05G5.7 protein.
          Length = 293

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 25/93 (26%), Positives = 45/93 (48%)
 Frame = +3

Query: 87  LATYYLKYIKLVINISELTNCVNSRNLTLKCCDVNSEDK*SALN*TKQI*KQEYLVL*TF 266
           +A Y+L Y+ L +N+S   + + S    L CC    E    +L  + ++     L+L T 
Sbjct: 8   VAQYFLYYLSLFLNVSPENSVLISECSFLFCCARAREKLTRSL--SSRLISFIRLLLLTS 65

Query: 267 YTVKQFSTTARLQNDNESARSIETLQHSGRRRD 365
             ++ F+T+ +L    E  + +E L+   RR D
Sbjct: 66  PKMESFATSDKLFESREFVKGLEELKK--RRED 96


>U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical
           protein F45F2.6 protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/62 (25%), Positives = 32/62 (51%)
 Frame = -1

Query: 202 LSSEFTSQHFNVKFLEFTQFVNSLMLMTNFIYLR*YVAKIAYFNFYDVHLHKERQIYKFT 23
           +S  + S+  N+++  F   + S+ ++  FIYL  Y+     FN   ++L + R +   T
Sbjct: 68  ISPTWQSESMNIEYTIFCVLMYSIAILY-FIYLYAYILYPIVFNTILLYLERMRVLNVHT 126

Query: 22  IK 17
           +K
Sbjct: 127 VK 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,386,183
Number of Sequences: 27780
Number of extensions: 172098
Number of successful extensions: 392
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)