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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d21
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59230.1 68418.m07423 transcription factor-related low simila...    42   3e-04
At1g07480.2 68414.m00801 transcription factor IIA large subunit ...    39   0.002
At1g07480.1 68414.m00800 transcription factor IIA large subunit ...    39   0.002
At1g07470.1 68414.m00797 transcription factor IIA large subunit,...    39   0.002

>At5g59230.1 68418.m07423 transcription factor-related low
           similarity to transcription factor IIA large subunit
           [Arabidopsis thaliana] GI:2826884
          Length = 186

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
 Frame = +1

Query: 340 YNIVVDDVISGVRNSFLDDG-VDEQVLQELKQLWKTKLQASGA 465
           YN V+DDVI+  R   + +G +DE VL +++ +WKTK+  +GA
Sbjct: 12  YNYVIDDVINKSRCDLVYNGELDESVLSQIQSMWKTKMIQAGA 54


>At1g07480.2 68414.m00801 transcription factor IIA large subunit /
           TFIIA large subunit (TFIIA-L) identical to transcription
           factor IIA large subunit GI:2826884 from [Arabidopsis
           thaliana]
          Length = 375

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
 Frame = +1

Query: 337 LYNIVVDDVISGVRNSFLDDG-VDEQVLQELKQLWKTKLQASG 462
           +Y  V++DV++ VR  F+++G   E VL EL+ +W+TK+  +G
Sbjct: 10  VYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAG 52


>At1g07480.1 68414.m00800 transcription factor IIA large subunit /
           TFIIA large subunit (TFIIA-L) identical to transcription
           factor IIA large subunit GI:2826884 from [Arabidopsis
           thaliana]
          Length = 375

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
 Frame = +1

Query: 337 LYNIVVDDVISGVRNSFLDDG-VDEQVLQELKQLWKTKLQASG 462
           +Y  V++DV++ VR  F+++G   E VL EL+ +W+TK+  +G
Sbjct: 10  VYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAG 52


>At1g07470.1 68414.m00797 transcription factor IIA large subunit,
           putative / TFIIA large subunit, putative nearly
           identical to transcription factor IIA large subunit
           GI:2826884 from [Arabidopsis thaliana]; contains Pfam
           profile: PF03153 transcription factor IIA, alpha/beta
           subunit
          Length = 375

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
 Frame = +1

Query: 337 LYNIVVDDVISGVRNSFLDDG-VDEQVLQELKQLWKTKLQASG 462
           +Y  V++DV++ VR  F+++G   E VL EL+ +W+TK+  +G
Sbjct: 10  VYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAG 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,449,340
Number of Sequences: 28952
Number of extensions: 150076
Number of successful extensions: 373
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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