BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11d21 (559 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g59230.1 68418.m07423 transcription factor-related low simila... 42 3e-04 At1g07480.2 68414.m00801 transcription factor IIA large subunit ... 39 0.002 At1g07480.1 68414.m00800 transcription factor IIA large subunit ... 39 0.002 At1g07470.1 68414.m00797 transcription factor IIA large subunit,... 39 0.002 >At5g59230.1 68418.m07423 transcription factor-related low similarity to transcription factor IIA large subunit [Arabidopsis thaliana] GI:2826884 Length = 186 Score = 41.9 bits (94), Expect = 3e-04 Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 1/43 (2%) Frame = +1 Query: 340 YNIVVDDVISGVRNSFLDDG-VDEQVLQELKQLWKTKLQASGA 465 YN V+DDVI+ R + +G +DE VL +++ +WKTK+ +GA Sbjct: 12 YNYVIDDVINKSRCDLVYNGELDESVLSQIQSMWKTKMIQAGA 54 >At1g07480.2 68414.m00801 transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L) identical to transcription factor IIA large subunit GI:2826884 from [Arabidopsis thaliana] Length = 375 Score = 39.1 bits (87), Expect = 0.002 Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%) Frame = +1 Query: 337 LYNIVVDDVISGVRNSFLDDG-VDEQVLQELKQLWKTKLQASG 462 +Y V++DV++ VR F+++G E VL EL+ +W+TK+ +G Sbjct: 10 VYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAG 52 >At1g07480.1 68414.m00800 transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L) identical to transcription factor IIA large subunit GI:2826884 from [Arabidopsis thaliana] Length = 375 Score = 39.1 bits (87), Expect = 0.002 Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%) Frame = +1 Query: 337 LYNIVVDDVISGVRNSFLDDG-VDEQVLQELKQLWKTKLQASG 462 +Y V++DV++ VR F+++G E VL EL+ +W+TK+ +G Sbjct: 10 VYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAG 52 >At1g07470.1 68414.m00797 transcription factor IIA large subunit, putative / TFIIA large subunit, putative nearly identical to transcription factor IIA large subunit GI:2826884 from [Arabidopsis thaliana]; contains Pfam profile: PF03153 transcription factor IIA, alpha/beta subunit Length = 375 Score = 39.1 bits (87), Expect = 0.002 Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%) Frame = +1 Query: 337 LYNIVVDDVISGVRNSFLDDG-VDEQVLQELKQLWKTKLQASG 462 +Y V++DV++ VR F+++G E VL EL+ +W+TK+ +G Sbjct: 10 VYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAG 52 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,449,340 Number of Sequences: 28952 Number of extensions: 150076 Number of successful extensions: 373 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 365 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 372 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1062855648 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -