Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d17
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    28   0.84 
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    28   1.1  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   1.9  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    27   2.6  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   3.4  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   5.9  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    25   5.9  

>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 273 GWRDEECGKIQKCHYTVIRVKLFGRRSQGYDF 368
           GW ++  G++  C+Y   R+ ++  +S+G DF
Sbjct: 204 GWSEQVPGRLYVCNYCHRRLGVWNLQSEGQDF 235


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 484 LQQIILLMLEATICRRTYDKTIEIAKN 564
           L QIILL  E   C+ TY +++EI KN
Sbjct: 395 LDQIILLTQEGE-CQHTYVRSVEIIKN 420


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +1

Query: 103 NKKMSNNKDRDEPAFLAHQCFLKKDYTA---ALQHLSDLENLVGTSNKRVQHNKAV 261
           N+  +N  ++ EPA ++ +  L K  T+     +H  DLEN V T   R+  NKAV
Sbjct: 413 NELNNNVVEKAEPAPVS-EIPLSKTLTSHKIVPKHQVDLENYVFTEGSRLMSNKAV 467


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 238 FYSKFPQGFPSR*DVVMPLCSPFLRNIGELK 146
           F+SKFP G P++   + P C+ F+R    LK
Sbjct: 156 FFSKFPAGIPTKRKDLFP-CNFFIRRGVHLK 185


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 26/127 (20%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
 Frame = +1

Query: 193  QHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLSG-----LNYLDVEVK 357
            + LS LEN V  ++++ +   A  + +  ++ N +   + ++ LS      L+ +  + +
Sbjct: 902  ERLSSLENQVTIADEKYEFLYAEKQSIEEDLANKQTEISYLSDLSSTLEKKLSSIKKDEQ 961

Query: 358  DMTSPC--LLYNYAVILFHSRYYYQCVVILEKLLSSKSIKDARLLQQIILLMLEATICRR 531
             ++S    L  +Y  I+   ++  Q +  LEK ++ K++    L ++++ L  E  + +R
Sbjct: 962  TISSKYKELEKDYLNIMADYQHSSQHLSNLEKAINEKNLNIRELNEKLMRLDDELLLKQR 1021

Query: 532  TYDKTIE 552
            +YD  ++
Sbjct: 1022 SYDTKVQ 1028



 Score = 26.2 bits (55), Expect = 3.4
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
 Frame = +1

Query: 76   YI*NQTQSTNKKMSNNKDRDEPAFLAHQCFLKKDYTAAL-------QHLSDLENLVGTSN 234
            Y+ + + +  KK+S+ K +DE    +    L+KDY   +       QHLS+LE  +   N
Sbjct: 941  YLSDLSSTLEKKLSSIK-KDEQTISSKYKELEKDYLNIMADYQHSSQHLSNLEKAINEKN 999

Query: 235  KRVQHNKAVVEFMAGEMKNVEKFKNAITQLSGLNYLDVEVKDMTSPCLLYNYAVILFHSR 414
              ++     +  +  E+  + K ++  T++  L   +  +KD    C  Y   +    S+
Sbjct: 1000 LNIRELNEKLMRLDDEL--LLKQRSYDTKVQELREENASLKDQ---CRTYESQLASLVSK 1054

Query: 415  Y 417
            Y
Sbjct: 1055 Y 1055


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 160 CFLKKDYTAALQHLSDLENLVGT-SNKRVQH 249
           C+LK+ Y  AL HL ++EN      N  +QH
Sbjct: 883 CYLKR-YERALGHLKEMENAFDEFKNFTIQH 912


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +1

Query: 337 YLDVEVKDMTSPCLLYNYAVILFHSRYYYQCVVILEKL---LSSKSIKDARLLQQII 498
           Y  VE+ D        + A+ L  + Y Y+  + LEK    +S+K  KD     +++
Sbjct: 443 YTQVELLDYQESSTFKDIAIRLNTAEYIYRTTIELEKRFQEISNKEFKDKMSFSEVL 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,127
Number of Sequences: 5004
Number of extensions: 45640
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)