BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11d17 (570 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104 33 0.16 02_01_0423 - 3092863-3094959 31 0.65 08_02_1584 - 28039228-28039342,28039987-28040156,28043009-28043137 27 8.0 >12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104 Length = 744 Score = 33.1 bits (72), Expect = 0.16 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Frame = +1 Query: 244 QHNKAVVEFMAGEMKNVEKFKNAITQLSGLNYLDVEVKDMTSPCL-----LYNYAVILFH 408 QHN V +F A +K++ + + + L YLD E S CL +Y++ V+L Sbjct: 555 QHNAKVADFGASALKSMNESEFIMFVQGTLGYLDPE--SFISHCLTDKSDVYSFGVVLLE 612 Query: 409 SRYYYQCVVILEKLLSSKSIKDARLLQQIILLMLEATICRRTYDKTI 549 ++ ++ + + SI + L LLM + I R D+ I Sbjct: 613 -------LMTRKRAIFANSINEKESLSYSFLLMFDQNIHRNMLDREI 652 >02_01_0423 - 3092863-3094959 Length = 698 Score = 31.1 bits (67), Expect = 0.65 Identities = 17/61 (27%), Positives = 30/61 (49%) Frame = +1 Query: 148 LAHQCFLKKDYTAALQHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLS 327 L H CFL+ +++ ++ L+NLV T + + G++K +EK A +S Sbjct: 240 LKHLCFLRNQLEGSIKGITKLKNLV-TIDLGQNRLSGSIPNSIGQLKRLEKLHLAYNSMS 298 Query: 328 G 330 G Sbjct: 299 G 299 >08_02_1584 - 28039228-28039342,28039987-28040156,28043009-28043137 Length = 137 Score = 27.5 bits (58), Expect = 8.0 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Frame = +1 Query: 130 RDEPAF--LAHQCFLKKDYTAALQHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKF 303 RDE A LA F ++DY + + SDL+ + T+ ++H + + MA + + Sbjct: 9 RDESAISDLAGHGFEEEDYPV-VDYESDLQTAMSTTENSIRHYRRLHVSMALYQDRLRRV 67 Query: 304 KNAITQL 324 + +T+L Sbjct: 68 RQMLTKL 74 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,008,438 Number of Sequences: 37544 Number of extensions: 243477 Number of successful extensions: 534 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 510 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 534 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1317005676 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -