Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d17
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104     33   0.16 
02_01_0423 - 3092863-3094959                                           31   0.65 
08_02_1584 - 28039228-28039342,28039987-28040156,28043009-28043137     27   8.0  

>12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104
          Length = 744

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
 Frame = +1

Query: 244 QHNKAVVEFMAGEMKNVEKFKNAITQLSGLNYLDVEVKDMTSPCL-----LYNYAVILFH 408
           QHN  V +F A  +K++ + +  +     L YLD E     S CL     +Y++ V+L  
Sbjct: 555 QHNAKVADFGASALKSMNESEFIMFVQGTLGYLDPE--SFISHCLTDKSDVYSFGVVLLE 612

Query: 409 SRYYYQCVVILEKLLSSKSIKDARLLQQIILLMLEATICRRTYDKTI 549
                  ++  ++ + + SI +   L    LLM +  I R   D+ I
Sbjct: 613 -------LMTRKRAIFANSINEKESLSYSFLLMFDQNIHRNMLDREI 652


>02_01_0423 - 3092863-3094959
          Length = 698

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +1

Query: 148 LAHQCFLKKDYTAALQHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLS 327
           L H CFL+     +++ ++ L+NLV T +         +    G++K +EK   A   +S
Sbjct: 240 LKHLCFLRNQLEGSIKGITKLKNLV-TIDLGQNRLSGSIPNSIGQLKRLEKLHLAYNSMS 298

Query: 328 G 330
           G
Sbjct: 299 G 299


>08_02_1584 - 28039228-28039342,28039987-28040156,28043009-28043137
          Length = 137

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +1

Query: 130 RDEPAF--LAHQCFLKKDYTAALQHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKF 303
           RDE A   LA   F ++DY   + + SDL+  + T+   ++H + +   MA     + + 
Sbjct: 9   RDESAISDLAGHGFEEEDYPV-VDYESDLQTAMSTTENSIRHYRRLHVSMALYQDRLRRV 67

Query: 304 KNAITQL 324
           +  +T+L
Sbjct: 68  RQMLTKL 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,008,438
Number of Sequences: 37544
Number of extensions: 243477
Number of successful extensions: 534
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)