Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11d17
(570 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK023227-1|BAB14478.1| 744|Homo sapiens protein ( Homo sapiens ... 60 4e-09
BC002931-1|AAH02931.1| 744|Homo sapiens CCR4-NOT transcription ... 60 5e-09
BC002928-1|AAH02928.1| 717|Homo sapiens CNOT10 protein protein. 60 5e-09
AK022952-1|BAB14327.1| 744|Homo sapiens protein ( Homo sapiens ... 60 5e-09
AK022576-1|BAB14108.1| 743|Homo sapiens protein ( Homo sapiens ... 56 9e-08
AK021695-1|BAB13876.1| 595|Homo sapiens protein ( Homo sapiens ... 36 0.076
>AK023227-1|BAB14478.1| 744|Homo sapiens protein ( Homo sapiens
cDNA FLJ13165 fis, clone NT2RP3003686. ).
Length = 744
Score = 60.5 bits (140), Expect = 4e-09
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 4/139 (2%)
Frame = +1
Query: 151 AHQCFLKKDYTAALQHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLSG 330
A Q F +Y A LQHL+ L++ + + ++ N AV EF + + + QL
Sbjct: 34 AFQAFTSGNYDACLQHLARLQD-INKDDYKIILNTAVAEFFKSNQTTTDNLRQTLNQLKN 92
Query: 331 LNYLDVE----VKDMTSPCLLYNYAVILFHSRYYYQCVVILEKLLSSKSIKDARLLQQII 498
+ VE + D+ + L YN AVIL+H R Y + + + EKL + + Q +
Sbjct: 93 QVHSAVEEMDGLDDVENSMLYYNQAVILYHLRQYTEAISVGEKLYQFIEPFEEKFAQAVC 152
Query: 499 LLMLEATICRRTYDKTIEI 555
L+++ I +K + +
Sbjct: 153 FLLVDLYILTYQAEKALHL 171
>BC002931-1|AAH02931.1| 744|Homo sapiens CCR4-NOT transcription
complex, subunit 10 protein.
Length = 744
Score = 60.1 bits (139), Expect = 5e-09
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 4/139 (2%)
Frame = +1
Query: 151 AHQCFLKKDYTAALQHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLSG 330
A Q F +Y A LQHL+ L++ + + ++ N AV EF + + + QL
Sbjct: 34 AFQAFTSGNYDACLQHLACLQD-INKDDYKIILNTAVAEFFKSNQTTTDNLRQTLNQLKN 92
Query: 331 LNYLDVE----VKDMTSPCLLYNYAVILFHSRYYYQCVVILEKLLSSKSIKDARLLQQII 498
+ VE + D+ + L YN AVIL+H R Y + + + EKL + + Q +
Sbjct: 93 QVHSAVEEMDGLDDVENSMLYYNQAVILYHLRQYTEAISVGEKLYQFIEPFEEKFAQAVC 152
Query: 499 LLMLEATICRRTYDKTIEI 555
L+++ I +K + +
Sbjct: 153 FLLVDLYILTYQAEKALHL 171
>BC002928-1|AAH02928.1| 717|Homo sapiens CNOT10 protein protein.
Length = 717
Score = 60.1 bits (139), Expect = 5e-09
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 4/139 (2%)
Frame = +1
Query: 151 AHQCFLKKDYTAALQHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLSG 330
A Q F +Y A LQHL+ L++ + + ++ N AV EF + + + QL
Sbjct: 34 AFQAFTSGNYDACLQHLACLQD-INKDDYKIILNTAVAEFFKSNQTTTDNLRQTLNQLKN 92
Query: 331 LNYLDVE----VKDMTSPCLLYNYAVILFHSRYYYQCVVILEKLLSSKSIKDARLLQQII 498
+ VE + D+ + L YN AVIL+H R Y + + + EKL + + Q +
Sbjct: 93 QVHSAVEEMDGLDDVENSMLYYNQAVILYHLRQYTEAISVGEKLYQFIEPFEEKFAQAVC 152
Query: 499 LLMLEATICRRTYDKTIEI 555
L+++ I +K + +
Sbjct: 153 FLLVDLYILTYQAEKALHL 171
>AK022952-1|BAB14327.1| 744|Homo sapiens protein ( Homo sapiens
cDNA FLJ12890 fis, clone NT2RP2004124. ).
Length = 744
Score = 60.1 bits (139), Expect = 5e-09
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 4/139 (2%)
Frame = +1
Query: 151 AHQCFLKKDYTAALQHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLSG 330
A Q F +Y A LQHL+ L++ + + ++ N AV EF + + + QL
Sbjct: 34 AFQAFTSGNYDACLQHLACLQD-INKDDYKIILNTAVAEFFKSNQTTTDNLRQTLNQLKN 92
Query: 331 LNYLDVE----VKDMTSPCLLYNYAVILFHSRYYYQCVVILEKLLSSKSIKDARLLQQII 498
+ VE + D+ + L YN AVIL+H R Y + + + EKL + + Q +
Sbjct: 93 QVHSAVEEMDGLDDVENSMLYYNQAVILYHLRQYTEAISVGEKLYQFIEPFEEKFAQAVC 152
Query: 499 LLMLEATICRRTYDKTIEI 555
L+++ I +K + +
Sbjct: 153 FLLVDLYILTYQAEKALHL 171
>AK022576-1|BAB14108.1| 743|Homo sapiens protein ( Homo sapiens
cDNA FLJ12514 fis, clone NT2RM2001768. ).
Length = 743
Score = 56.0 bits (129), Expect = 9e-08
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Frame = +1
Query: 151 AHQCFLKKDYTAALQHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLSG 330
A Q F +Y A LQHL+ L++ + + ++ N AV EF + + + QL
Sbjct: 34 AFQAFTSGNYDACLQHLACLQD-INKDDYKIILNTAVAEFFKSNQTTTDNLRQTLNQLKN 92
Query: 331 LNYLDVE----VKDMTSPCLLYNYAVILFHSRYYYQCVVILEKL 450
+ VE + D+ + L YN AVIL+H R Y + + + EKL
Sbjct: 93 QVHSAVEEMDGLDDVENSMLYYNQAVILYHLRQYTEAISVGEKL 136
>AK021695-1|BAB13876.1| 595|Homo sapiens protein ( Homo sapiens
cDNA FLJ11633 fis, clone HEMBA1004274. ).
Length = 595
Score = 36.3 bits (80), Expect = 0.076
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +1
Query: 358 DMTSPCLLYNYAVILFHSRYYYQCVVILEKLLSSKSIKDARLLQQIILLMLEATICRRTY 537
D+ + L YN AVIL+H R Y + + + EKL + + Q + L+++ I
Sbjct: 6 DVENSMLYYNQAVILYHLRQYTEAISVGEKLYQFIEPFEEKFAQAVCFLLVDLYILTYQA 65
Query: 538 DKTIEI 555
+K + +
Sbjct: 66 EKALHL 71
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,151,241
Number of Sequences: 237096
Number of extensions: 1480800
Number of successful extensions: 2639
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2636
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5816287018
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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