Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d17
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.6  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 569 PWFLAISIVLS*VRRHIVASNISKIICCSNLASFMLLELNNFSNM 435
           PW L   IVL+ V   +V  N+  I     LA +   +L N +NM
Sbjct: 63  PWILVTLIVLAIVNVMVVLGNVLVI-----LAVYHTSKLRNVTNM 102


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -3

Query: 424 DNNNVNGTE*PRNYTTNRVKSY 359
           +NNN N      NY  N  K Y
Sbjct: 334 NNNNYNNNNYNNNYNNNCKKLY 355


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 172 FLRNIGELKKQVHRDLCCLTF 110
           F  +IG  +   H+D CC  F
Sbjct: 794 FHTDIGNSQSLAHQDQCCPGF 814


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,002
Number of Sequences: 438
Number of extensions: 3132
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)