Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d16
         (625 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6RKK5 Cluster: Polyketide synthase; n=7; Ascomycota|Re...    33   4.2  
UniRef50_Q4J840 Cluster: Beta-carotene hydroxylase; n=3; Sulfolo...    33   4.2  
UniRef50_Q22LS9 Cluster: Putative uncharacterized protein; n=2; ...    33   5.6  
UniRef50_Q4QAA2 Cluster: TFIIH basal transcription factor comple...    33   7.3  

>UniRef50_Q6RKK5 Cluster: Polyketide synthase; n=7; Ascomycota|Rep:
            Polyketide synthase - Gibberella moniliformis (Fusarium
            verticillioides)
          Length = 3734

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 187  QTAASLQYVCFRFWKPHFKYFPQLLTVVDALHNKFRCKYLEYATKICE 44
            Q AA + Y    +W+   +  P  LTV D    K R    +Y T+  E
Sbjct: 2503 QKAAKVPYTTLAYWRSELEDLPPTLTVFDFAETKTRIPLTDYTTRALE 2550


>UniRef50_Q4J840 Cluster: Beta-carotene hydroxylase; n=3;
           Sulfolobaceae|Rep: Beta-carotene hydroxylase -
           Sulfolobus acidocaldarius
          Length = 154

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 217 CVNADFIFTHQTAASLQYVCFRFWKPHFKYFPQLLTVVDALHNKFR 80
           C    + F H      +++  R W    KYF +L+ V D  HNK R
Sbjct: 87  CYGISYFFVHDMIIHDRHLHLRSWAMKHKYFRELVMVHDVHHNKGR 132


>UniRef50_Q22LS9 Cluster: Putative uncharacterized protein; n=2;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 926

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 202 FIFTHQTAASLQYVCFRFWKPHFKYFPQLLTVVDALHNKFRCK 74
           F+  +Q     Q + F    PHFKY   LL +++   NK  CK
Sbjct: 680 FMSVYQVLEINQIISFTLSFPHFKYLKCLLNLINIKFNKLSCK 722


>UniRef50_Q4QAA2 Cluster: TFIIH basal transcription factor complex
           helicase subunit, putative; n=6; Trypanosomatidae|Rep:
           TFIIH basal transcription factor complex helicase
           subunit, putative - Leishmania major
          Length = 813

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 27/94 (28%), Positives = 42/94 (44%)
 Frame = +2

Query: 71  IFATKFIV*CVYNRQELRKIFKMRLPKPKTNILKTGCCLVCKNKICIDTKSAQIMRRFNL 250
           ++ T+ +   V    E+RK+ K    + +      G CL  K  +CI+T  A    R + 
Sbjct: 71  VYCTRTVEEMVKTMGEMRKLLKHWEAEGEQLRPLRGLCLSAKKNLCIETSVAS---RIHP 127

Query: 251 DNVTYAGCITRSISKLMDSTKKFTVYETYRCMPL 352
           D V  AGC  RSI+      ++   Y+T    PL
Sbjct: 128 DEVD-AGC--RSITAPWQQERRCGYYDTLAQAPL 158


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 568,254,708
Number of Sequences: 1657284
Number of extensions: 11318924
Number of successful extensions: 21397
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21395
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)