Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d16
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1460 + 27295201-27295269,27295968-27296074,27296252-272963...    29   4.0  
07_03_1285 + 25477542-25477625,25477776-25477832,25477973-254780...    28   5.2  
11_04_0314 - 16277292-16277927,16278385-16278514,16278934-162792...    27   9.2  

>08_02_1460 +
           27295201-27295269,27295968-27296074,27296252-27296384,
           27296621-27296714,27296828-27297030,27297167-27297240,
           27297331-27297406,27297530-27297585,27297939-27298026,
           27298115-27298255,27298338-27298487,27299015-27299221
          Length = 465

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 469 YSLKYHKLQGYMF*ISYEHYCVVYNMYHPI 380
           Y  KY K+ G  F IS   YCV ++ Y+ +
Sbjct: 224 YCTKYEKIVGEQFSISDAEYCVFHSPYNKL 253


>07_03_1285 +
           25477542-25477625,25477776-25477832,25477973-25478040,
           25478187-25478391,25478429-25478586,25478865-25478940,
           25479065-25479124,25479186-25479236,25479663-25479741,
           25480183-25480271
          Length = 308

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 352 TWR*KSHCT*LGDTYCTLHNSVHMIFKTY 438
           T+R + HC   G T C  H+S HM    Y
Sbjct: 24  TFRRRHHCRNCGRTLCHEHSSYHMALPQY 52


>11_04_0314 -
           16277292-16277927,16278385-16278514,16278934-16279217,
           16279308-16279431,16280442-16280530,16280630-16280706,
           16280790-16280922,16282131-16282211,16282372-16282539
          Length = 573

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 155 KTNILKTGCCLVCKNKICIDTKSAQIMRRFNLDNVTYAGCI 277
           K +I+KT   +V  NK+  +     I  RF +D + +AGCI
Sbjct: 283 KPHIMKTSSEIV--NKLRTEGHFMSIHLRFEMDMLAFAGCI 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,664,775
Number of Sequences: 37544
Number of extensions: 289847
Number of successful extensions: 524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)