Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d16
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024202-8|AAK93869.2|  816|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF067616-10|AAC19189.2|  668|Caenorhabditis elegans Abnormal dau...    29   3.6  
Z50006-5|CAA90300.1|  301|Caenorhabditis elegans Hypothetical pr...    28   4.7  

>AC024202-8|AAK93869.2|  816|Caenorhabditis elegans Hypothetical
           protein Y71H2B.5 protein.
          Length = 816

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 73  ICNEIYCVMRLQPSRAEENI*NAASKT*NKHIEDW 177
           IC+++ C ++    +A E++ +AA     K +EDW
Sbjct: 498 ICDDVICYLKSDKLKASEDVGDAAEAEEVKQMEDW 532


>AF067616-10|AAC19189.2|  668|Caenorhabditis elegans Abnormal dauer
           formation protein1, isoform b protein.
          Length = 668

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/25 (44%), Positives = 21/25 (84%), Gaps = 1/25 (4%)
 Frame = +2

Query: 272 CITRSIS-KLMDSTKKFTVYETYRC 343
           C TR ++ ++++ST +FTV+E+Y+C
Sbjct: 464 CGTRYLAPEILNSTMQFTVFESYQC 488


>Z50006-5|CAA90300.1|  301|Caenorhabditis elegans Hypothetical
           protein T07C5.4 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 182 CLVCKNKICIDTKSAQIMRRFNLDNVTYAGCITRSISKLMDSTKKFTVYETYRCMPL 352
           C+ C+   C+D    QI +   L+ +        S   L+DSTK+ T Y + + +P+
Sbjct: 62  CMFCRFHKCVDVGMLQIFQYSQLEKLI-------SSLTLLDSTKESTFYYSTKIVPI 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,891,324
Number of Sequences: 27780
Number of extensions: 304340
Number of successful extensions: 644
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)