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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d15
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1064 + 23700662-23700787,23701709-23701870,23701983-237021...    90   2e-18
07_03_1492 + 26960876-26960986,26961910-26962074,26962153-269622...    77   1e-14
03_01_0512 - 3849275-3849333,3849429-3849531,3849610-3849654,384...    68   8e-12
03_03_0021 + 13808274-13808384,13809036-13809200,13809249-138092...    57   1e-08
04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189     29   4.8  
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879...    28   8.4  

>07_03_1064 +
           23700662-23700787,23701709-23701870,23701983-23702101,
           23703128-23703202,23704387-23704480,23704856-23704915,
           23705083-23705151,23705457-23705555,23706201-23706245,
           23706339-23706441,23706665-23706723
          Length = 336

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 49/149 (32%), Positives = 85/149 (57%), Gaps = 6/149 (4%)
 Frame = +3

Query: 279 LFGKSQKSPAELVRSLKDAVTALER------GDKKAEKAQEDVSKNLVLIKNMLYGTSDA 440
           LF    ++PA++VR  ++ +  L+       GD K E+   ++SKN+  +K++LYG  ++
Sbjct: 4   LFKSKPRTPADVVRQTRELLIFLDLHSGSRGGDAKREEKMAELSKNIRELKSILYGNGES 63

Query: 441 EPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEY 620
           EP T+  V QL QE +             +++ E +KD  QV  N+ R+Q+ ++    EY
Sbjct: 64  EPVTEACV-QLTQEFFRENTLRLLIICLPKLNLETRKDATQVVANLQRQQVSSKIVASEY 122

Query: 621 ICTKPEILFTLMSGYEHQEIASNCGTMLR 707
           +    ++L TL+SGYE+ +IA + G+MLR
Sbjct: 123 LEANKDLLDTLISGYENMDIALHYGSMLR 151


>07_03_1492 +
           26960876-26960986,26961910-26962074,26962153-26962271,
           26962559-26962633,26963063-26963156,26963239-26963298,
           26963474-26963539,26963622-26963720,26964027-26964035
          Length = 265

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 45/139 (32%), Positives = 79/139 (56%)
 Frame = +3

Query: 291 SQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYGTSDAEPQTDIIVAQ 470
           ++ SP ELVRS+K+++ AL+   +   KA EDV KN+  ++  L G  + EP  + ++ Q
Sbjct: 12  ARPSPQELVRSIKESLLALDT--RTGAKALEDVEKNVSTLRQTLSGDGEVEPNQEQVL-Q 68

Query: 471 LAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEYICTKPEILFT 650
           +A E+               + +EG+KD+A  ++ +LR+++      V+YI    ++L  
Sbjct: 69  IALEICKEDVLSLFVQNMPSLGWEGRKDLAHCWSILLRQKVDEAYCCVQYIENHFDLLDF 128

Query: 651 LMSGYEHQEIASNCGTMLR 707
           L+  Y++ E+A NCG MLR
Sbjct: 129 LVVCYKNLEVALNCGNMLR 147


>03_01_0512 -
           3849275-3849333,3849429-3849531,3849610-3849654,
           3849876-3849974,3850078-3850146,3850251-3850310,
           3850540-3850633,3850875-3850949,3851101-3851219,
           3851433-3851600,3852743-3852928
          Length = 358

 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 10/153 (6%)
 Frame = +3

Query: 279 LFGKSQKSPAELVRSLKDAVTALER-----GDK---KAEKAQEDVSKNLVLIKNMLYGTS 434
           LF    + P E+VR  ++ +  L       GDK   K E    D++K++  +K++LYG  
Sbjct: 22  LFRSKARGPVEVVRHARELLAFLAENHDACGDKRDVKREHKMVDLAKSIGEMKSILYGNG 81

Query: 435 DAEPQTDIIVAQLAQEMYXXXXXXXXXXXXXR--IDFEGKKDVAQVFNNVLRRQIGTRSP 608
           +A+P  D   +QL +E +                +D E +KDV QV  N+LR+++  R  
Sbjct: 82  EADP-VDEACSQLTKEFFKENTNSLHLLVVCLPYMDLETQKDVTQVTANLLRQKVDYRMV 140

Query: 609 TVEYICTKPEILFTLMSGYEHQEIASNCGTMLR 707
             +Y+    ++L  LMSGY++ +IA +   +LR
Sbjct: 141 ASDYLEENQDLLDVLMSGYDNMDIAIHYSAILR 173


>03_03_0021 +
           13808274-13808384,13809036-13809200,13809249-13809278,
           13809279-13809397,13809696-13809770,13812071-13812146,
           13813224-13813289,13813364-13813462,13814072-13814174,
           13814338-13814411
          Length = 305

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 9/145 (6%)
 Frame = +3

Query: 300 SPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYGTSDAEP---QTDIIVAQ 470
           +P E+VRS+KD+  AL    K   +A E+V KNL  ++ ML G  +AEP   Q   I  +
Sbjct: 15  TPEEVVRSIKDSFQALHT--KNGARALEEVEKNLSSLRQMLSGDGEAEPNQEQVLQITLE 72

Query: 471 LAQE------MYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEYICTK 632
           + +E      +                + + +KD+   +  +LR++       V+YI   
Sbjct: 73  ICKEDVLSLFVQNLPSLGWGPVEIVSSELQVRKDLVHCWCILLRQKFDESYCCVKYIENH 132

Query: 633 PEILFTLMSGYEHQEIASNCGTMLR 707
            E+L  L+  Y++ ++A NCG MLR
Sbjct: 133 LELLDFLVGCYKNLDVALNCGNMLR 157


>04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189
          Length = 470

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +3

Query: 285 GKSQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIK 413
           G+ +K   EL+R + +    +E   K+ EKAQE++ K   +++
Sbjct: 224 GRVEKICTELIRGIGEDKAEVEALKKETEKAQEELQKEREMLQ 266


>02_04_0481 +
           23284296-23284448,23284553-23284753,23284855-23287971,
           23288510-23289353,23289468-23290120,23290573-23290676,
           23290898-23291000
          Length = 1724

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 264 LNTMPLFGKSQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNML 422
           L  +  FG+  K+ AE ++S+K A+  +    KKA+   E V   L   K  L
Sbjct: 300 LQKVNTFGEENKNLAEELQSVKAALDVVNAEAKKAKAEFEQVEHKLSTTKEKL 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,824,126
Number of Sequences: 37544
Number of extensions: 307719
Number of successful extensions: 799
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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