Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d15
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             30   2.1  
SB_5| Best HMM Match : No HMM Matches (HMM E-Value=.)                  28   6.5  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  28   6.5  
SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)                   28   8.5  

>SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 258 SRLNTMPLFGKSQKSPAELVRSLKDAVTALERGDKKAEK--AQEDVSKNLVLIKNMLYGT 431
           +RLN    F  + K PAE++R  ++     E+  +KA K   +++  +  +++  ++Y  
Sbjct: 50  NRLNNFKKFKDNYKDPAEILRKKREERERQEKERRKALKIEREKEQERQGIILPEIIYSD 109

Query: 432 SDAE 443
            D E
Sbjct: 110 YDEE 113


>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 279  LFGKSQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLV-LIKNML 422
            LFGK  ++       LK+     ERGD++ E ++ED    L+  +KN+L
Sbjct: 2728 LFGKGLQTHQNEKTGLKEEFETAERGDEEFETSEEDDHYTLMEKVKNIL 2776


>SB_5| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 458 DICLWFCIRCTIKHIFNQYQILAHVFLSFFSFLITPL*SRHGIF 327
           D+ +   I  +I +I+ QY+++AHV+ S   F      SR G +
Sbjct: 89  DVRIASVICLSIANIYRQYEVVAHVYQSAIEFKCISSGSRAGSY 132


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 291  SQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYGTSDA 440
            SQ+   E  +   + + A    DKK + A E VSKN+V  K      S++
Sbjct: 954  SQEKVGEAAQPESNKIEATASSDKKKDLAAEKVSKNVVTRKRPASSESES 1003


>SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)
          Length = 1110

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 538 LKEKKMWPKFSTMSLDVKLEHDLQQ*STFVPSLKYYL 648
           L E+   PK     L +  E+DLQQ  T VP L  YL
Sbjct: 460 LTEEDKPPKEFDQRLPIITENDLQQLQTSVPELSEYL 496


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,401,425
Number of Sequences: 59808
Number of extensions: 393136
Number of successful extensions: 794
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)