BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11d15 (707 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z99277-3|CAB16486.1| 338|Caenorhabditis elegans Hypothetical pr... 147 6e-36 U53337-4|AAA96186.2| 636|Caenorhabditis elegans Hypothetical pr... 145 3e-35 U53337-5|AAP40522.1| 377|Caenorhabditis elegans Hypothetical pr... 144 7e-35 AF098995-9|AAC67486.1| 295|Caenorhabditis elegans F-box b prote... 30 1.4 AF386744-1|AAL57289.1| 384|Caenorhabditis elegans PAF-1 protein. 29 2.5 AF039716-8|AAB96738.1| 384|Caenorhabditis elegans Paf-acetylhyd... 29 2.5 >Z99277-3|CAB16486.1| 338|Caenorhabditis elegans Hypothetical protein Y53C12A.4 protein. Length = 338 Score = 147 bits (357), Expect = 6e-36 Identities = 74/149 (49%), Positives = 100/149 (67%), Gaps = 5/149 (3%) Frame = +3 Query: 276 PLFGKSQKSPAELVRSLKDAVTALER-----GDKKAEKAQEDVSKNLVLIKNMLYGTSDA 440 PLFGK+ K+PA++V++L+DA+ ++R ++K EKA E+ +K L L K +YG+ Sbjct: 4 PLFGKADKTPADVVKNLRDALLVIDRHGTNTSERKVEKAIEETAKMLALAKTFIYGSDAN 63 Query: 441 EPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEY 620 EP + V QLAQE+Y + +FE KKDVA VFNN+LRRQIGTRSPTVEY Sbjct: 64 EPNNEQ-VTQLAQEVYNANVLPMLIKHLHKFEFECKKDVASVFNNLLRRQIGTRSPTVEY 122 Query: 621 ICTKPEILFTLMSGYEHQEIASNCGTMLR 707 + +PEIL TL+ GYE +IA CG+MLR Sbjct: 123 LAARPEILITLLLGYEQPDIALTCGSMLR 151 >U53337-4|AAA96186.2| 636|Caenorhabditis elegans Hypothetical protein R02E12.2a protein. Length = 636 Score = 145 bits (351), Expect = 3e-35 Identities = 78/165 (47%), Positives = 106/165 (64%), Gaps = 16/165 (9%) Frame = +3 Query: 261 RLNTMPL-FGKSQKSPAELVRSLKDAVTALER-------------GDKKAEKAQEDVSKN 398 R MPL FGKS KSPA++V++L++ +T L++ DKK +KA ++VSKN Sbjct: 256 RRKVMPLLFGKSHKSPADVVKTLREVLTILDKLPPPKLDKDGNIQSDKKYDKALDEVSKN 315 Query: 399 LVLIKNMLYGTSDAEPQTDIIV--AQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFN 572 + +IK+ +YG AEP ++ +V AQLAQE+Y + +FE KKDV Q+FN Sbjct: 316 VAMIKSFIYGNDSAEPSSEHVVQVAQLAQEVYNANILPMLIKMLPKFEFECKKDVGQIFN 375 Query: 573 NVLRRQIGTRSPTVEYICTKPEILFTLMSGYEHQEIASNCGTMLR 707 N+LRRQIGTRSPTVEY+ +PEIL L+ GY +IA CG MLR Sbjct: 376 NLLRRQIGTRSPTVEYLGARPEILIQLVQGYSVPDIALTCGLMLR 420 >U53337-5|AAP40522.1| 377|Caenorhabditis elegans Hypothetical protein R02E12.2b protein. Length = 377 Score = 144 bits (348), Expect = 7e-35 Identities = 77/161 (47%), Positives = 105/161 (65%), Gaps = 16/161 (9%) Frame = +3 Query: 273 MPL-FGKSQKSPAELVRSLKDAVTALER-------------GDKKAEKAQEDVSKNLVLI 410 MPL FGKS KSPA++V++L++ +T L++ DKK +KA ++VSKN+ +I Sbjct: 1 MPLLFGKSHKSPADVVKTLREVLTILDKLPPPKLDKDGNIQSDKKYDKALDEVSKNVAMI 60 Query: 411 KNMLYGTSDAEPQTDIIV--AQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLR 584 K+ +YG AEP ++ +V AQLAQE+Y + +FE KKDV Q+FNN+LR Sbjct: 61 KSFIYGNDSAEPSSEHVVQVAQLAQEVYNANILPMLIKMLPKFEFECKKDVGQIFNNLLR 120 Query: 585 RQIGTRSPTVEYICTKPEILFTLMSGYEHQEIASNCGTMLR 707 RQIGTRSPTVEY+ +PEIL L+ GY +IA CG MLR Sbjct: 121 RQIGTRSPTVEYLGARPEILIQLVQGYSVPDIALTCGLMLR 161 >AF098995-9|AAC67486.1| 295|Caenorhabditis elegans F-box b protein protein 19 protein. Length = 295 Score = 30.3 bits (65), Expect = 1.4 Identities = 17/59 (28%), Positives = 30/59 (50%) Frame = -1 Query: 320 SNKLRRAFLRLTKERHSIKATWAGDISNYVYIRLYFDFHENVREAKFDKLKATANLAGL 144 SNK RR +++ KE++ I G + ++ L FD+ N + K D + +L+ L Sbjct: 35 SNKTRR-LIKMLKEKNHITCISMGSPISIDFLSLTFDYKSNQKIVKIDNPEQNGSLSRL 92 >AF386744-1|AAL57289.1| 384|Caenorhabditis elegans PAF-1 protein. Length = 384 Score = 29.5 bits (63), Expect = 2.5 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +3 Query: 552 DVAQVFNNVLRRQIGTRSPTVEYICTKPEILFTL 653 D VF N L +Q G PT Y+C + I TL Sbjct: 317 DFPFVFPNWLAKQFGVHGPTEPYLCMQSAIELTL 350 >AF039716-8|AAB96738.1| 384|Caenorhabditis elegans Paf-acetylhydrolase protein 1 protein. Length = 384 Score = 29.5 bits (63), Expect = 2.5 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +3 Query: 552 DVAQVFNNVLRRQIGTRSPTVEYICTKPEILFTL 653 D VF N L +Q G PT Y+C + I TL Sbjct: 317 DFPFVFPNWLAKQFGVHGPTEPYLCMQSAIELTL 350 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,376,940 Number of Sequences: 27780 Number of extensions: 304631 Number of successful extensions: 793 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 777 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 787 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1645110168 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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