Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d15
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99277-3|CAB16486.1|  338|Caenorhabditis elegans Hypothetical pr...   147   6e-36
U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical pr...   145   3e-35
U53337-5|AAP40522.1|  377|Caenorhabditis elegans Hypothetical pr...   144   7e-35
AF098995-9|AAC67486.1|  295|Caenorhabditis elegans F-box b prote...    30   1.4  
AF386744-1|AAL57289.1|  384|Caenorhabditis elegans PAF-1 protein.      29   2.5  
AF039716-8|AAB96738.1|  384|Caenorhabditis elegans Paf-acetylhyd...    29   2.5  

>Z99277-3|CAB16486.1|  338|Caenorhabditis elegans Hypothetical
           protein Y53C12A.4 protein.
          Length = 338

 Score =  147 bits (357), Expect = 6e-36
 Identities = 74/149 (49%), Positives = 100/149 (67%), Gaps = 5/149 (3%)
 Frame = +3

Query: 276 PLFGKSQKSPAELVRSLKDAVTALER-----GDKKAEKAQEDVSKNLVLIKNMLYGTSDA 440
           PLFGK+ K+PA++V++L+DA+  ++R      ++K EKA E+ +K L L K  +YG+   
Sbjct: 4   PLFGKADKTPADVVKNLRDALLVIDRHGTNTSERKVEKAIEETAKMLALAKTFIYGSDAN 63

Query: 441 EPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEY 620
           EP  +  V QLAQE+Y             + +FE KKDVA VFNN+LRRQIGTRSPTVEY
Sbjct: 64  EPNNEQ-VTQLAQEVYNANVLPMLIKHLHKFEFECKKDVASVFNNLLRRQIGTRSPTVEY 122

Query: 621 ICTKPEILFTLMSGYEHQEIASNCGTMLR 707
           +  +PEIL TL+ GYE  +IA  CG+MLR
Sbjct: 123 LAARPEILITLLLGYEQPDIALTCGSMLR 151


>U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical
           protein R02E12.2a protein.
          Length = 636

 Score =  145 bits (351), Expect = 3e-35
 Identities = 78/165 (47%), Positives = 106/165 (64%), Gaps = 16/165 (9%)
 Frame = +3

Query: 261 RLNTMPL-FGKSQKSPAELVRSLKDAVTALER-------------GDKKAEKAQEDVSKN 398
           R   MPL FGKS KSPA++V++L++ +T L++              DKK +KA ++VSKN
Sbjct: 256 RRKVMPLLFGKSHKSPADVVKTLREVLTILDKLPPPKLDKDGNIQSDKKYDKALDEVSKN 315

Query: 399 LVLIKNMLYGTSDAEPQTDIIV--AQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFN 572
           + +IK+ +YG   AEP ++ +V  AQLAQE+Y             + +FE KKDV Q+FN
Sbjct: 316 VAMIKSFIYGNDSAEPSSEHVVQVAQLAQEVYNANILPMLIKMLPKFEFECKKDVGQIFN 375

Query: 573 NVLRRQIGTRSPTVEYICTKPEILFTLMSGYEHQEIASNCGTMLR 707
           N+LRRQIGTRSPTVEY+  +PEIL  L+ GY   +IA  CG MLR
Sbjct: 376 NLLRRQIGTRSPTVEYLGARPEILIQLVQGYSVPDIALTCGLMLR 420


>U53337-5|AAP40522.1|  377|Caenorhabditis elegans Hypothetical
           protein R02E12.2b protein.
          Length = 377

 Score =  144 bits (348), Expect = 7e-35
 Identities = 77/161 (47%), Positives = 105/161 (65%), Gaps = 16/161 (9%)
 Frame = +3

Query: 273 MPL-FGKSQKSPAELVRSLKDAVTALER-------------GDKKAEKAQEDVSKNLVLI 410
           MPL FGKS KSPA++V++L++ +T L++              DKK +KA ++VSKN+ +I
Sbjct: 1   MPLLFGKSHKSPADVVKTLREVLTILDKLPPPKLDKDGNIQSDKKYDKALDEVSKNVAMI 60

Query: 411 KNMLYGTSDAEPQTDIIV--AQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLR 584
           K+ +YG   AEP ++ +V  AQLAQE+Y             + +FE KKDV Q+FNN+LR
Sbjct: 61  KSFIYGNDSAEPSSEHVVQVAQLAQEVYNANILPMLIKMLPKFEFECKKDVGQIFNNLLR 120

Query: 585 RQIGTRSPTVEYICTKPEILFTLMSGYEHQEIASNCGTMLR 707
           RQIGTRSPTVEY+  +PEIL  L+ GY   +IA  CG MLR
Sbjct: 121 RQIGTRSPTVEYLGARPEILIQLVQGYSVPDIALTCGLMLR 161


>AF098995-9|AAC67486.1|  295|Caenorhabditis elegans F-box b protein
           protein 19 protein.
          Length = 295

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -1

Query: 320 SNKLRRAFLRLTKERHSIKATWAGDISNYVYIRLYFDFHENVREAKFDKLKATANLAGL 144
           SNK RR  +++ KE++ I     G   +  ++ L FD+  N +  K D  +   +L+ L
Sbjct: 35  SNKTRR-LIKMLKEKNHITCISMGSPISIDFLSLTFDYKSNQKIVKIDNPEQNGSLSRL 92


>AF386744-1|AAL57289.1|  384|Caenorhabditis elegans PAF-1 protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 552 DVAQVFNNVLRRQIGTRSPTVEYICTKPEILFTL 653
           D   VF N L +Q G   PT  Y+C +  I  TL
Sbjct: 317 DFPFVFPNWLAKQFGVHGPTEPYLCMQSAIELTL 350


>AF039716-8|AAB96738.1|  384|Caenorhabditis elegans
           Paf-acetylhydrolase protein 1 protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 552 DVAQVFNNVLRRQIGTRSPTVEYICTKPEILFTL 653
           D   VF N L +Q G   PT  Y+C +  I  TL
Sbjct: 317 DFPFVFPNWLAKQFGVHGPTEPYLCMQSAIELTL 350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,376,940
Number of Sequences: 27780
Number of extensions: 304631
Number of successful extensions: 793
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)