Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d15
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.0  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   6.6  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   6.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   6.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.7  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 408 IKNMLYGTSDAEPQTDIIVAQLAQ 479
           IKNM+ GTS A+    I+ A + +
Sbjct: 99  IKNMITGTSQADCAVLIVAAGIGE 122


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
 Frame = +3

Query: 285  GKSQKSPA--ELVRS---LKDAVTALERGDKKAEKAQEDVSKNLVL 407
            GK ++SP   ELV +   +KD V  ++RG+K     Q+ V  +++L
Sbjct: 1289 GKLRQSPRLKELVGATSIIKDCVEDMKRGNKILRTCQKAVVLSMLL 1334


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 452 CLWFCIRCTIKHIFNQYQILAH 387
           C W C  CT      QYQI  H
Sbjct: 605 CCWHCFNCT------QYQIRDH 620


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 408 IKNMLYGTSDAEPQTDIIVA 467
           IKNM+ GTS A+    I+ A
Sbjct: 26  IKNMITGTSQADCAVLIVAA 45


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 408 IKNMLYGTSDAEPQTDIIVA 467
           IKNM+ GTS A+    I+ A
Sbjct: 42  IKNMITGTSQADCAVLIVAA 61


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 408 IKNMLYGTSDAEPQTDIIVA 467
           IKNM+ GTS A+    I+ A
Sbjct: 99  IKNMITGTSQADCAVLIVAA 118


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -1

Query: 203 ENVREAKFDKLKATANLAGLKN*ENVYNMLQIAFLKGNRLKT 78
           E   + ++DK+          N  NVY    I  +K N  KT
Sbjct: 16  ELTNDCRYDKMTRPPGEINSINPINVYTKAYIYTIKSNMAKT 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,471
Number of Sequences: 438
Number of extensions: 3829
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)