BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11d15 (707 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 23 3.7 AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 23 3.7 AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 22 5.0 EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-a... 22 6.6 AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 22 6.6 AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 22 6.6 DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 21 8.7 >X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha protein. Length = 461 Score = 22.6 bits (46), Expect = 3.7 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +3 Query: 408 IKNMLYGTSDAEPQTDIIVAQLAQ 479 IKNM+ GTS A+ I+ A + + Sbjct: 99 IKNMITGTSQADCAVLIVAAGIGE 122 >AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor protein. Length = 1770 Score = 22.6 bits (46), Expect = 3.7 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 5/46 (10%) Frame = +3 Query: 285 GKSQKSPA--ELVRS---LKDAVTALERGDKKAEKAQEDVSKNLVL 407 GK ++SP ELV + +KD V ++RG+K Q+ V +++L Sbjct: 1289 GKLRQSPRLKELVGATSIIKDCVEDMKRGNKILRTCQKAVVLSMLL 1334 >AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate receptor protein. Length = 1040 Score = 22.2 bits (45), Expect = 5.0 Identities = 10/22 (45%), Positives = 10/22 (45%) Frame = -1 Query: 452 CLWFCIRCTIKHIFNQYQILAH 387 C W C CT QYQI H Sbjct: 605 CCWHCFNCT------QYQIRDH 620 >EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-alpha protein. Length = 172 Score = 21.8 bits (44), Expect = 6.6 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +3 Query: 408 IKNMLYGTSDAEPQTDIIVA 467 IKNM+ GTS A+ I+ A Sbjct: 26 IKNMITGTSQADCAVLIVAA 45 >AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-alpha protein. Length = 274 Score = 21.8 bits (44), Expect = 6.6 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +3 Query: 408 IKNMLYGTSDAEPQTDIIVA 467 IKNM+ GTS A+ I+ A Sbjct: 42 IKNMITGTSQADCAVLIVAA 61 >AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha F2 protein. Length = 461 Score = 21.8 bits (44), Expect = 6.6 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +3 Query: 408 IKNMLYGTSDAEPQTDIIVA 467 IKNM+ GTS A+ I+ A Sbjct: 99 IKNMITGTSQADCAVLIVAA 118 >DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated ion channel subunit protein. Length = 469 Score = 21.4 bits (43), Expect = 8.7 Identities = 12/42 (28%), Positives = 17/42 (40%) Frame = -1 Query: 203 ENVREAKFDKLKATANLAGLKN*ENVYNMLQIAFLKGNRLKT 78 E + ++DK+ N NVY I +K N KT Sbjct: 16 ELTNDCRYDKMTRPPGEINSINPINVYTKAYIYTIKSNMAKT 57 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 182,471 Number of Sequences: 438 Number of extensions: 3829 Number of successful extensions: 11 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 11 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 21804885 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -