Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d14
         (478 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      28   0.051
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      28   0.051
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   0.63 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   1.4  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   3.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   4.4  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   7.7  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   7.7  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 27.9 bits (59), Expect = 0.051
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 387 PPHPQVGPHAPEMETEP 337
           PPHP + PH P + + P
Sbjct: 231 PPHPGLSPHPPHLSSHP 247


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 27.9 bits (59), Expect = 0.051
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 387 PPHPQVGPHAPEMETEP 337
           PPHP + PH P + + P
Sbjct: 123 PPHPGLSPHPPHLSSHP 139


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 0.63
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 379 SAGGSTCARDGDRTDSAGRTRE 314
           S GG    RDGDR D  G  ++
Sbjct: 91  SGGGRGGGRDGDRGDGGGEEKK 112



 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 283 GTGARHRRG*VRGSC 327
           GT   H+RG + G C
Sbjct: 272 GTSTNHQRGRILGGC 286


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -2

Query: 375 QVGPHAPEMETEPT-AQAGPAN-STAPMTGTCPNTAAEPATGSSPATATL 232
           Q    A    T PT  +A  A+ + AP +   P     P+T +SP T  +
Sbjct: 189 QQNKSASRTTTSPTKVKASKASPAAAPRSVATPTGIPTPSTSASPPTVNI 238


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 336 TAQAGPANSTAPMTGTCPNTAAEPATGSSPATATL 232
           T Q  PAN +     + P++ +  + G  PAT  +
Sbjct: 48  TGQRLPANFSFGQVNSPPSSTSSGSLGQFPATPVI 82


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 387 PPHPQVGPHAPEMETEP 337
           P  P  G H PE+ + P
Sbjct: 698 PNFPTCGDHVPEINSNP 714


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 376 AGGSTCARDGDRTDSAGRTRELNRAD 299
           AGG TC   G+ ++S   +R  +  D
Sbjct: 152 AGGFTCPAPGEVSNSGSFSRHAHPDD 177


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 376 AGGSTCARDGDRTDSAGRTRELNRAD 299
           AGG TC   G+ ++S   +R  +  D
Sbjct: 152 AGGFTCPAPGEVSNSGSFSRHAHPDD 177


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,015
Number of Sequences: 336
Number of extensions: 1506
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11141978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)