Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d14
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    31   0.069
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    29   0.48 
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   1.5  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    26   3.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   4.5  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 31.5 bits (68), Expect = 0.069
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = -2

Query: 390 EPPHPQVGPHAPEMETEPTAQAGPANSTAPMTGTCPNTAAEPATGSSPA 244
           +PP   V P AP +   P A   P   +AP     P     P+    PA
Sbjct: 516 QPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPA 564



 Score = 29.1 bits (62), Expect = 0.37
 Identities = 16/46 (34%), Positives = 18/46 (39%)
 Frame = -2

Query: 384 PHPQVGPHAPEMETEPTAQAGPANSTAPMTGTCPNTAAEPATGSSP 247
           P P V P APE+ + P   A P    AP     P     P   S P
Sbjct: 605 PQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVP 650



 Score = 28.7 bits (61), Expect = 0.48
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = -2

Query: 384 PHPQVGPHAPEMETEPTAQAGPANSTAPMTGTCPNTAAEPATGSSP 247
           P P V P APE+ + P     P    AP     P     P   S P
Sbjct: 575 PQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVP 620



 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = -2

Query: 384 PHPQVGPHAPEMETEPTAQAGPANSTAPMTGTCPNTAAEPATGSSPA 244
           P P   P  PE    P+    PA   AP   + P   A P    +P+
Sbjct: 515 PQPPAAPVVPE---APSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPS 558



 Score = 25.8 bits (54), Expect = 3.4
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = -2

Query: 384 PHPQVGPHAPEMETEPTAQAGPANSTAPMTGTCPNTAAEPATGSSPA 244
           P P V P  PE  + P     P    AP   + P   A P    +P+
Sbjct: 590 PQPPVAPVVPEAPSVPQPPVAP---VAPEVPSVPQRPAVPVVPEAPS 633



 Score = 25.8 bits (54), Expect = 3.4
 Identities = 14/46 (30%), Positives = 16/46 (34%)
 Frame = -2

Query: 384 PHPQVGPHAPEMETEPTAQAGPANSTAPMTGTCPNTAAEPATGSSP 247
           P P   P  PE+ + P   A P    AP     P     P   S P
Sbjct: 635 PQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVP 680


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 357 PEMETEPTAQAGPANSTAPMTGTCPNTAAEPATGSSPATATL 232
           P   + PT+ +  +NST P T   P T++ P + S  + +T+
Sbjct: 98  PITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTI 139


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -2

Query: 378 PQVGPHAPEMETEPTAQAGPANSTAPMTGTCPNTAAE--PATGS-SPA 244
           P  G HA    + P+A  G +  + P + T P + A   P T + +PA
Sbjct: 273 PMYGSHAAPYASTPSAAVGSSRGSTPASATVPISPARGFPTTSAYNPA 320


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 283 QYSGGAGHGELASHGHVTDAGAAVPSTAAVPD 188
           QY GG G+G   SH   T    AV   +  PD
Sbjct: 198 QYGGGGGNGHALSHYDDTGHPLAVKLKSISPD 229


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 366 PHAPEMETEPTAQAGPANSTAPMTGT-CPNTAAEPATGSSPATAT 235
           P      T  T    P +S+ P+T T C  + + P T S+P T+T
Sbjct: 400 PPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYT-STPVTST 443



 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 345 TEPTAQAGPANSTAPMTGTCPNTAAE-PATGSSPATAT 235
           T  T+     NST P+T T P T++  P T ++  T+T
Sbjct: 394 TTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTST 431



 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 345 TEPTAQAGPANSTAPMTGTCPNTAAEPATGSSPATAT 235
           T  T+     NST P+T T P T+    +   P  +T
Sbjct: 286 TTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPAST 322



 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 345 TEPTAQAGPANSTAPMTGTCPNTAAEPATGSSPATAT 235
           T  T+     NST P+T T P T+    +   P  +T
Sbjct: 340 TTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPAST 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,487,081
Number of Sequences: 5004
Number of extensions: 22609
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)