Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d14
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.55 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   0.73 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.73 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   5.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   6.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 0.55
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = -2

Query: 393 GEPPHPQVGPHAPEMETEPTAQAGPANSTAP 301
           G  P P   P AP+  + P    GP     P
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 21.0 bits (42), Expect = 6.8
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -2

Query: 393 GEPPHPQVGPHAPEMETEPTAQAGPANSTAPMTG 292
           G PP+P  GP        P +Q       +P +G
Sbjct: 37  GSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 0.73
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 363 HAPEMETEPTAQAGPANSTAPMTGTCPNTAAEPATGSSPA 244
           H P +ET  +    P  ++AP + T   +++ PA G++ A
Sbjct: 501 HEPVVETNSSPSPNPRIASAPSSST---SSSPPAKGAAAA 537


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 0.73
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = -2

Query: 393 GEPPHPQVGPHAPEMETEPTAQAGPANSTAPMTGTCPNTAAEPATGSSPAT 241
           GE      G    E +   T  + PA  T   TG      A  ATG+ PAT
Sbjct: 192 GEDEFANGGAARDESKAGSTDASTPATVTT--TGATTTLPAASATGTGPAT 240



 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -3

Query: 158 RHMDLKEVHRDPHDPGTGCT 99
           R   L   H  PH+PG   T
Sbjct: 637 RDASLSSTHSHPHEPGAPAT 656



 Score = 21.8 bits (44), Expect = 3.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 242 VAGELPVAGSAAVLGQVPVIGA 307
           VA     A +AA +G VPV+GA
Sbjct: 563 VAAVAAAAVAAAGVGGVPVVGA 584


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 162 PSVDLGTALSGTA 200
           PSV +G+A++GTA
Sbjct: 55  PSVPVGSAVAGTA 67


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 164 GVRHMDLKEVHRDPHDPGTGCTHFGLDKFESR 69
           GV H+D   VH   H    G + F  ++ + R
Sbjct: 272 GVYHLDNHHVHHANHHAILGHSGFLCERHQKR 303


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 14/52 (26%), Positives = 19/52 (36%)
 Frame = -1

Query: 385 AASAGGSTCARDGDRTDSAGRTRELNRADDGHLSQYSGGAGHGELASHGHVT 230
           +++ G S C   G    +AG           H SQY    G      HG+ T
Sbjct: 291 SSALGRSACHSPGVYPSTAGFLPPSYHPHQHHPSQYHPHRGSSPHHQHGNHT 342


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -2

Query: 378 PQVGPHAPEMETEPTAQAGPANST 307
           P+ GP  PE + E     G  + T
Sbjct: 204 PEKGPKVPEKKKEDEIDEGKESKT 227


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -2

Query: 381 HPQVGPH 361
           HPQ GPH
Sbjct: 357 HPQAGPH 363


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -2

Query: 381 HPQVGPH 361
           HPQ GPH
Sbjct: 357 HPQAGPH 363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,615
Number of Sequences: 438
Number of extensions: 1889
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)