Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d13
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.)             131   4e-31
SB_49877| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_11741| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.085
SB_51866| Best HMM Match : Pkinase (HMM E-Value=0)                     31   0.60 
SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.79 
SB_26127| Best HMM Match : Pkinase (HMM E-Value=5.3e-10)               31   1.0  
SB_6748| Best HMM Match : Pkinase (HMM E-Value=1.7e-05)                30   1.8  
SB_29061| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_58065| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_26833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_37572| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_23835| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)                   29   4.2  
SB_34527| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_28982| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_55525| Best HMM Match : WD40 (HMM E-Value=1.1)                      28   7.4  
SB_58716| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_37006| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-22)                 27   9.7  
SB_32763| Best HMM Match : Histone_HNS (HMM E-Value=0.15)              27   9.7  

>SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score =  131 bits (317), Expect = 4e-31
 Identities = 64/127 (50%), Positives = 87/127 (68%)
 Frame = +1

Query: 259 QEASIFVFEKKQLDRWQKADRDIMLETLKRGIIQLTKLRHPQILTVQHSLEESRESLAFA 438
           QEAS+ VFEK+ LD   K DRD++LE +K+G +QLT+LRHP++L +QH++EESR+ LAFA
Sbjct: 3   QEASLVVFEKRLLDTVDKRDRDVVLELMKKGAVQLTRLRHPRLLLIQHAMEESRDCLAFA 62

Query: 439 TEPVFASLANILGYTENMPQPIPGHLTNYKLFELEIKYGLMQIAEGLAFLHTDVKLLHRN 618
           TEP+FASL+N+LG  +NMP P P                   + EGL FLH D K+L  N
Sbjct: 63  TEPIFASLSNVLGRHDNMPSPPPPEFA---------------LVEGLMFLHNDAKILQGN 107

Query: 619 VCPESII 639
           + PE+I+
Sbjct: 108 LSPENIV 114


>SB_49877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
 Frame = +1

Query: 316 DRDIMLETLKRGIIQLTKLRHPQILTVQHSLEESRESLAFATEPVFASLANILGYTENMP 495
           +R  +L   +R    L  L HP ++ +   + E  +     TE     L++ +  +++ P
Sbjct: 46  ERGALLAKFRRECELLEALNHPNVVRLITVIYEGNKPPILITELCDCDLSSFIKDSKSKP 105

Query: 496 QPIPGHLTNYKLFELEIKYGLMQIAEGLAFLHTDVK-LLHRNVCPESII 639
                     KL   E+   ++ +A GL +LHT ++  +HR++CP++I+
Sbjct: 106 ----------KLLLEEVVTIMLDVANGLNYLHTRIQPTIHRDLCPKNIL 144


>SB_11741| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 49

 Score = 34.3 bits (75), Expect = 0.085
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 565 IAEGLAFLHTDVKLLHRNVCPESII 639
           + EGL FLH D K+L  N+ PE+I+
Sbjct: 1   LVEGLMFLHNDAKILQGNLSPENIV 25


>SB_51866| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 948

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +1

Query: 517 TNYKLFELEIKYGLMQIAEGLAFLHTDVKLLHRNVCPESII 639
           T+  L    ++Y L QI  GL ++H+  K+LHR++ P +++
Sbjct: 118 TDQPLTTEHVRYFLYQILRGLKYIHS-AKVLHRDLKPSNLL 157


>SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2229

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 19/53 (35%), Positives = 34/53 (64%)
 Frame = +1

Query: 481  TENMPQPIPGHLTNYKLFELEIKYGLMQIAEGLAFLHTDVKLLHRNVCPESII 639
            +E++  PIP H    ++    I Y   QIA+ LA+LHT + +++R++ PE+I+
Sbjct: 1602 SESLSSPIPIH----RIVLFRIAY---QIADALAYLHT-LGVIYRDLKPENIL 1646


>SB_26127| Best HMM Match : Pkinase (HMM E-Value=5.3e-10)
          Length = 460

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/37 (35%), Positives = 27/37 (72%)
 Frame = +1

Query: 526 KLFELEIKYGLMQIAEGLAFLHTDVKLLHRNVCPESI 636
           +L E ++K  L+Q+A+GL ++H+ + L+H ++ P +I
Sbjct: 234 RLSEADLKMLLLQLAQGLKYIHS-LHLVHMDIKPGNI 269


>SB_6748| Best HMM Match : Pkinase (HMM E-Value=1.7e-05)
          Length = 315

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 550 YGLMQIAEGLAFLHTDVKLLHRNVCPESII 639
           Y  +   +GL +LHT  K++H ++ PE+I+
Sbjct: 150 YIFLGTLKGLDYLHTKCKIIHTDIKPENIL 179


>SB_29061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 511 VQVLVEAYFPCSLVYWLSSQTLVQWRTLSSHDSLRGYAVQLRSADVVV 368
           V V+V AY+ C L YW S   L  +R +   D+    ++ L  A V V
Sbjct: 254 VAVMVTAYYGCYLTYW-SGWILCSFRRVFCDDAFTFISIFLSYASVAV 300


>SB_58065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
 Frame = +1

Query: 310 KADRDIMLETLKRGIIQLTKLRHPQILTVQHSLEESRESLAFATEPVFASLANILGYTEN 489
           K+DR++  +TL  G+    +  HP  +  +H   + R  +AFA   + A +A  +G   +
Sbjct: 327 KSDRELNPKTLTSGLDDYPRASHPSEIE-RH--VDLRCWMAFAA-GLMADIAEAVGQNSD 382

Query: 490 MPQPIPGHLTNYKLFELEIKYGLMQIAEGLAFLHTD-VKLLHRNVCP 627
             +    +L++ KL + +  + + Q        HT  VKL+HR+  P
Sbjct: 383 PYKQTSAYLSDVKLLD-KYHWSVRQQMYSDFGNHTKFVKLVHRSTQP 428


>SB_26833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 854

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 26/102 (25%), Positives = 47/102 (46%)
 Frame = +1

Query: 334 ETLKRGIIQLTKLRHPQILTVQHSLEESRESLAFATEPVFASLANILGYTENMPQPIPGH 513
           E +    I   +LRHP I+    + EE +E L    E V  +    LG   N  +     
Sbjct: 245 EIVNETTIMREQLRHPNIVRYFKAFEE-KEKLYIIMELVEGAP---LGEHFNSLKEKGTR 300

Query: 514 LTNYKLFELEIKYGLMQIAEGLAFLHTDVKLLHRNVCPESII 639
            +  +++ + I     QI  GL ++H +  ++HR++ P +I+
Sbjct: 301 FSEERIWHIFI-----QIVLGLRYIHKEKHIVHRDLTPNNIM 337


>SB_37572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +1

Query: 559 MQIAEGLAFLHTDVKLLHRNVCPESII 639
           + +   L +LH+++K++HR+V P +I+
Sbjct: 135 VSVVSALEYLHSNLKVIHRDVKPSNIL 161


>SB_23835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 596

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +1

Query: 307 QKADRDIMLETLKRGIIQLTKLRHPQILTVQHSLEES 417
           QK + D MLE  KR II    LRH ++L  +  LE S
Sbjct: 496 QKEESD-MLERTKRDIILDRTLRHQEMLDTRRKLENS 531


>SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 371 SFVSCIIPLLRVSNIMSLSAFCHLSNCFFSNTNIDASCFVD 249
           S ++  +P L +SN+MSL+          SN N+D +C  +
Sbjct: 433 SSLNAFVPALLLSNVMSLAPKIDEVREAISNANLDLACITE 473


>SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)
          Length = 773

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 371 SFVSCIIPLLRVSNIMSLSAFCHLSNCFFSNTNIDASCFVD 249
           S ++  +P L +SN+MSL+          SN N+D +C  +
Sbjct: 144 SSLNAFVPALLLSNVMSLAPKIDEVREAISNANLDLACITE 184


>SB_34527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
 Frame = -1

Query: 514 NVQVLVEA-YFPCSLVYWLSSQT---LVQWRTLSS----HDSLRGYAVQLRSADVVV 368
           NV+ + E+ Y  C ++ ++ + T   L  W+T       HDSL GY V LR  D V+
Sbjct: 102 NVRYVRESSYVSCPVLRYVLASTPLMLTLWKTKKFTRFVHDSLVGYKVMLRGRDFVL 158


>SB_28982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1287

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 26/98 (26%), Positives = 49/98 (50%)
 Frame = +1

Query: 346 RGIIQLTKLRHPQILTVQHSLEESRESLAFATEPVFASLANILGYTENMPQPIPGHLTNY 525
           R +  L KL H  I+ ++  + E+ + L F  E +  +L  ++   +N  + +P      
Sbjct: 15  REVKSLRKLSHTNIVKLKEVIREN-DHLYFVFEYMKENLYQMM---KNRDKLLP------ 64

Query: 526 KLFELEIKYGLMQIAEGLAFLHTDVKLLHRNVCPESII 639
              E  I+  + QI +GLAF+H      HR++ PE+++
Sbjct: 65  ---ESVIRNVIYQILQGLAFIHKH-GYFHRDMKPENLL 98


>SB_55525| Best HMM Match : WD40 (HMM E-Value=1.1)
          Length = 203

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 155 GKTPDNCDTVLLTDE*NLLKTSISKYYC 72
           G T D+CDT+ +     ++ T++ K+ C
Sbjct: 112 GPTIDHCDTLFMISALTIISTAVDKFRC 139


>SB_58716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 365 VSCIIPLLRVSNIMSLSAFCHLSNCFFSNTNIDASCFVD 249
           ++  +P L +SN+MSL+          SN N+D +C  +
Sbjct: 81  LNAFVPALLLSNVMSLAPKIDEVREAISNANLDLACITE 119


>SB_37006| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-22)
          Length = 407

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 257 FVDFLYPLYIFHSRPGPALAMNCVASNSLVTGFPGKTP 144
           F+D+L  LYI +    P  A+  V++N+LV     KTP
Sbjct: 67  FIDYLRTLYIVNCVIQPIFAIVAVSTNTLVLYAIIKTP 104


>SB_32763| Best HMM Match : Histone_HNS (HMM E-Value=0.15)
          Length = 481

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = +1

Query: 241 YKKSTKQEASIFVFEKKQLDRWQKADRDIM-----LETLKRGIIQLTKLRHPQILTVQHS 405
           YKK+ K +       KK+LD W++   D+      L  L  G+ + T+ +  +I+ ++  
Sbjct: 247 YKKNEKMKGDTQRM-KKELDSWKRIQADMKMQYQDLRVLYDGVCKHTEEQKREIVEMKLL 305

Query: 406 LEESRESLA 432
           +E  + S+A
Sbjct: 306 MERDKRSIA 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,027,150
Number of Sequences: 59808
Number of extensions: 375354
Number of successful extensions: 1020
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)