Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d13
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.3  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   3.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.3  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 451 FASLANILGYTENMPQPIPGHLTNYKLFELEIKYGLMQIAEGLAFLHTDVKL 606
           + + + I    E+   P  GHL+    F LE+K  L  I E  +F H  +K+
Sbjct: 846 YMAASGITESAESEDGPRWGHLSTLVEFALELKKALSSINE-QSFNHFVLKM 896


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 218 RPGPALAMNCVASNS 174
           +PGP++ + CVAS +
Sbjct: 406 QPGPSMFLKCVASGN 420


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 329 IMSLSAFCHLSNCFFSNTN 273
           I SLS  C+ SN +++N N
Sbjct: 304 ISSLSNSCNYSNNYYNNNN 322


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 296 NCFFSNTNIDASCFVDFLYPLYI 228
           N    N+ +DAS  + F YP+ +
Sbjct: 804 NLLVCNSYVDASYMIAFAYPIML 826


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,438
Number of Sequences: 438
Number of extensions: 3428
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)