Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d09
         (568 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   0.45 
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    23   1.8  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    21   5.6  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   5.6  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   7.3  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 326 SFGLHSMHLVPSAFCTMQSIPIELKSETGRPTLVFRSTPSCVN 198
           SFGLH+    PS       +P ++ S   +     R+T  C N
Sbjct: 253 SFGLHATGSAPSPTAGAGGLPPQVPSPRSQRRYTGRATCDCPN 295


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 396 LSATNGINNGPFLILSVGIDGDQVVRSPFYAFSSVGV 286
           +SA+  I +  FL + VGI  D + R    A   VG+
Sbjct: 57  ISASTRIKSFKFLTIGVGITTDTIDRVFTVAIPFVGI 93


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 320 RTT*SPSIPTLKIKNGPLLIPLVADN 397
           R T SP+  + KIKN   LI   A+N
Sbjct: 88  RATLSPAFTSSKIKNMYSLISECAEN 113


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +2

Query: 161 VREMNYTTSTKTCSRKTGYF*RPVSVGRSPISTQ 262
           V   +YT   K+C     Y   P+++ +  +ST+
Sbjct: 56  VSSNSYTPKIKSCRPFKAYIKDPLTLAQGLVSTE 89


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = +3

Query: 135 RHHHHHV 155
           +HHHHH+
Sbjct: 52  QHHHHHL 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,542
Number of Sequences: 336
Number of extensions: 2965
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)