Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d09
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    29   0.36 
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    28   1.1  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    27   1.9  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   1.9  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    26   3.4  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    26   3.4  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   5.9  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   5.9  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    22   7.7  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    25   7.7  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    25   7.7  
SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce...    25   7.7  

>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 298 TKCIEWRPNDLITIDSDTQDQ 360
           +KC++W P D IT+DS  Q +
Sbjct: 792 SKCLKWDPKDRITVDSALQHE 812


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 242 GRPTLVFRSTPSCVNKSLYWS 180
           G  TLVF STP+  + S YWS
Sbjct: 333 GAATLVFESTPAYPDYSRYWS 353


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -3

Query: 284 CTMQSIPIELKSETGRPTLVFRSTPSCVNKSLYWSCNSSPELVDMMMMMT 135
           C+ Q+IPI    ET     ++ S   C +++++   N  P+L+  +   T
Sbjct: 145 CSSQAIPIVTAYETLGEDGIYTSLDECKSRAIFTDPNLIPKLLGPLKQST 194


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/98 (18%), Positives = 37/98 (37%)
 Frame = +1

Query: 238 RPVSDFNSIGMLCIVQNADGTKCIEWRPNDLITIDSDTQDQEWAVVNTVGRRQRTLSGNI 417
           R V + + +G   +         I W PN+   + +   D    ++ T   RQ T+  NI
Sbjct: 196 RQVLNLSYLGAAGVSAATGAVNSIAWHPNNATRLATAIDDNRNPIILTWDLRQPTVPQNI 255

Query: 418 TSDYANLRARIIKIPLDDLKTFRITRNNQQMQFSTKPG 531
            + +      +   P D        ++ + M ++ + G
Sbjct: 256 LTGHQKAALSLSWCPEDPTFLLSSGKDGRAMVWNVETG 293


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 175 LHDQYKDLFTQDGVLLKTSVGRPVSDFNSIGMLCIVQNADG 297
           L +Q KD+ +QDGV    +V R     N +  +C +   DG
Sbjct: 165 LLNQLKDILSQDGVFYMVAVAR-----NKLHSICEILQKDG 200


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 92  RSNNIEFYAIISWYLNKQSKTNLISRQSQ 6
           R  NI   ++  W+ N+++K+ LISR+ +
Sbjct: 201 RELNIPERSVTIWFQNRRAKSKLISRRQE 229


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 89  SNNIEFYAIISWYLNKQSK 33
           S N+E  A   WYL+KQ +
Sbjct: 578 SQNLEVRAFFGWYLSKQKR 596


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 123 G*LYRHHHHH 152
           G L+RHHHHH
Sbjct: 476 GSLHRHHHHH 485


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 21.8 bits (44), Expect(2) = 7.7
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +3

Query: 132 YRHHHHHVYE 161
           + HHHHH ++
Sbjct: 304 HHHHHHHSHD 313



 Score = 21.4 bits (43), Expect(2) = 7.7
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 111 VYFSG*LYRHHHHH 152
           ++  G  + HHHHH
Sbjct: 294 LHHEGHHHHHHHHH 307


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 391 RQRTLSGNITSDYANLRARIIKIPLDDLKT 480
           R  TL   + S+Y NL A +    L+DLKT
Sbjct: 168 RDCTLDPALGSEYTNLYAFVDDTALEDLKT 197


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 184 QYKDLFTQDGVLLKTSV--GRPVSDFNSIGMLCIVQNADGTKC 306
           + K +   + V L T +  GRP+++F S   L + +N   T+C
Sbjct: 107 ELKSIPVLESVHLHTKLIDGRPITNFASFNFLDLAENKHITEC 149


>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 138

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 427 YANLRARIIKIPLDDLKTFRITRNNQQMQFSTKPGVWQN--TFYFQHG 564
           Y+ +R       L ++   RIT + +++  S K  ++QN  T Y  HG
Sbjct: 72  YSQVRGPKAARVLSEILRNRITESKEKLSLSQKEKLFQNLPTVYILHG 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,320
Number of Sequences: 5004
Number of extensions: 49429
Number of successful extensions: 155
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)