Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11d09
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 29 2.6
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 29 2.6
02_02_0310 - 8842286-8843314 24 4.2
01_05_0200 - 19196606-19197304 25 4.4
11_04_0375 + 16933688-16933703,16936291-16937063 28 4.5
03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973... 28 4.5
01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820 23 5.2
12_01_0988 - 10039187-10039243,10039356-10039649,10039838-100402... 28 6.0
07_01_1173 + 11092482-11093465,11093552-11093914 28 6.0
06_03_0149 + 17260632-17260647,17263368-17264071 28 6.0
01_06_1067 + 34258036-34258051,34264808-34265679 28 6.0
07_03_0264 - 15958690-15958910,15959410-15959484,15959547-159597... 27 7.9
01_05_0197 + 19143582-19143618,19143814-19144523 27 7.9
12_01_0008 + 63393-64004 23 9.7
11_01_0009 + 67344-67955 23 9.7
>09_02_0077 +
3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -3
Query: 236 PTLVFRSTPSCVNKSLYWSCNSSPELVDMMMMMTIQSPAKI 114
P+L+ ++ S +N S WS + EL+ ++ M+ +P +
Sbjct: 276 PSLMQKAVDSIINGSTKWSTEFAEELLSLVSMLVSSTPGSL 316
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 396 TDPKR*HNIGLRESSG--AHHKNTPRRFKNVSHHP 494
T P + H+I + ESS HH N + ++ HHP
Sbjct: 962 THPVQEHSISIEESSDHHEHHHNEEHKAEDCGHHP 996
>02_02_0310 - 8842286-8843314
Length = 342
Score = 23.8 bits (49), Expect(2) = 4.2
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Frame = +3
Query: 135 RHHHHHVYE--FGR*ITRPVQRLVHARRGTSKDQCRSAGLRFQLNR--DALHCTERRRN* 302
RHHHHH + R P++R H + + R+ ++ D E R
Sbjct: 226 RHHHHHHEDDHEQREEGAPMKRFRHHHEEEEESEMRTKRFHHHHHKDDDERELEEMARRW 285
Query: 303 MHR-METERLDHHR 341
+ + + + R+ HHR
Sbjct: 286 IRKALMSSRMHHHR 299
Score = 23.0 bits (47), Expect(2) = 4.2
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = +3
Query: 132 YRHHHHH 152
+RHHHHH
Sbjct: 191 HRHHHHH 197
>01_05_0200 - 19196606-19197304
Length = 232
Score = 24.6 bits (51), Expect(2) = 4.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 129 LYRHHHHH 152
LY HHHHH
Sbjct: 219 LYHHHHHH 226
Score = 22.2 bits (45), Expect(2) = 4.4
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +3
Query: 138 HHHHHVYE 161
HHHHH Y+
Sbjct: 221 HHHHHHYK 228
>11_04_0375 + 16933688-16933703,16936291-16937063
Length = 262
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 259 SIGMLCIVQNADGTKCIEWRPNDLITI 339
++G L +Q DG+ IEWR N LI +
Sbjct: 6 ALGQLKAIQLLDGSNYIEWRNNVLINL 32
>03_02_0599 -
9730204-9730314,9730766-9731549,9731631-9732051,
9732139-9732385,9733730-9733921,9734071-9734204,
9734316-9734477,9736162-9736200,9737507-9737825
Length = 802
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 132 YRHHHHHVYEFGR*ITRPVQRLVHARRGTSKDQCRSAGL 248
+ HHHHV+ + +T+ Q+ RG+S QC S+ +
Sbjct: 634 FMQHHHHVHYYVHVMTQQ-QQQPSIERGSSDAQCGSSNV 671
>01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820
Length = 357
Score = 22.6 bits (46), Expect(3) = 5.2
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = +3
Query: 132 YRHHHHHVYE 161
+ HHHHH +E
Sbjct: 298 WHHHHHHHHE 307
Score = 21.4 bits (43), Expect(3) = 5.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 117 FSG*LYRHHHHH 152
FS + HHHHH
Sbjct: 295 FSPWHHHHHHHH 306
Score = 20.6 bits (41), Expect(3) = 5.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +3
Query: 141 HHHHVYEFGR*ITRPVQRL 197
HHHH + + P QRL
Sbjct: 299 HHHHHHHHEPTLPTPPQRL 317
>12_01_0988 -
10039187-10039243,10039356-10039649,10039838-10040202,
10042916-10042931
Length = 243
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 259 SIGMLCIVQNADGTKCIEWRPNDLITI 339
++G L +Q DG+ +EWR N LI +
Sbjct: 6 ALGQLKAIQLLDGSNYVEWRNNVLINL 32
>07_01_1173 + 11092482-11093465,11093552-11093914
Length = 448
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 139 IIIIMSTSSGDELHDQYKDLFTQDGVLLKTSVGRPVSDFNSIGML 273
+ + +S DE+ D+ +DL +DG LL+ +G V+ SI +L
Sbjct: 213 LTVSVSLRRRDEVGDELQDLAVEDGPLLERLLGHDVNWGPSIHVL 257
>06_03_0149 + 17260632-17260647,17263368-17264071
Length = 239
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 259 SIGMLCIVQNADGTKCIEWRPNDLITI 339
++G L +Q DG+ +EWR N LI +
Sbjct: 6 ALGQLKAIQLLDGSNYVEWRNNVLINL 32
>01_06_1067 + 34258036-34258051,34264808-34265679
Length = 295
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 262 IGMLCIVQNADGTKCIEWRPNDLITI 339
+G L +Q DG+ +EWR N LI +
Sbjct: 5 VGQLKAIQLLDGSNYVEWRNNVLINL 30
>07_03_0264 -
15958690-15958910,15959410-15959484,15959547-15959775,
15960312-15960587,15962109-15962369,15962632-15962781,
15963555-15963591,15963958-15964024,15964228-15964291,
15964643-15964812,15965046-15965124,15965576-15965733,
15965862-15966030,15966531-15966602,15966977-15967018,
15967245-15967488,15968782-15968963
Length = 831
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 120 SG*LYRHHHHHVYEFGR*ITRPVQ 191
+G L RHHHHH + G + R +Q
Sbjct: 17 AGHLCRHHHHHHHRDGLVLARSLQ 40
>01_05_0197 + 19143582-19143618,19143814-19144523
Length = 248
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = +1
Query: 259 SIGMLCIVQNADGTKCIEWRPNDLITI----DSDTQDQEWAVVNTVGRRQRTLSGNITSD 426
++G L +Q DG+ +EWR N I + D + Q +N +G L
Sbjct: 13 ALGQLKAIQLLDGSNYVEWRNNVFINLAIREDPPEEPQPAEELNIIGEEYDNLMWAYNKK 72
Query: 427 YAN 435
AN
Sbjct: 73 LAN 75
>12_01_0008 + 63393-64004
Length = 203
Score = 23.0 bits (47), Expect(2) = 9.7
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +3
Query: 132 YRHHHHHVY 158
+ HHHHH Y
Sbjct: 111 HHHHHHHPY 119
Score = 22.6 bits (46), Expect(2) = 9.7
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +3
Query: 129 LYRHHHHH 152
L+ HHHHH
Sbjct: 109 LHHHHHHH 116
>11_01_0009 + 67344-67955
Length = 203
Score = 23.0 bits (47), Expect(2) = 9.7
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +3
Query: 132 YRHHHHHVY 158
+ HHHHH Y
Sbjct: 111 HHHHHHHPY 119
Score = 22.6 bits (46), Expect(2) = 9.7
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +3
Query: 129 LYRHHHHH 152
L+ HHHHH
Sbjct: 109 LHHHHHHH 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,255,220
Number of Sequences: 37544
Number of extensions: 320716
Number of successful extensions: 983
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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