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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d09
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397...    29   2.6  
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    29   2.6  
02_02_0310 - 8842286-8843314                                           24   4.2  
01_05_0200 - 19196606-19197304                                         25   4.4  
11_04_0375 + 16933688-16933703,16936291-16937063                       28   4.5  
03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973...    28   4.5  
01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820     23   5.2  
12_01_0988 - 10039187-10039243,10039356-10039649,10039838-100402...    28   6.0  
07_01_1173 + 11092482-11093465,11093552-11093914                       28   6.0  
06_03_0149 + 17260632-17260647,17263368-17264071                       28   6.0  
01_06_1067 + 34258036-34258051,34264808-34265679                       28   6.0  
07_03_0264 - 15958690-15958910,15959410-15959484,15959547-159597...    27   7.9  
01_05_0197 + 19143582-19143618,19143814-19144523                       27   7.9  
12_01_0008 + 63393-64004                                               23   9.7  
11_01_0009 + 67344-67955                                               23   9.7  

>09_02_0077 +
           3964729-3964734,3965194-3965289,3965744-3973579,
           3973665-3973982,3974565-3974763,3974937-3975202,
           3975288-3975574,3976714-3977818,3977900-3978046,
           3978146-3978226,3978315-3978540,3978622-3978761,
           3979539-3979645,3979739-3979841
          Length = 3638

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -3

Query: 236 PTLVFRSTPSCVNKSLYWSCNSSPELVDMMMMMTIQSPAKI 114
           P+L+ ++  S +N S  WS   + EL+ ++ M+   +P  +
Sbjct: 276 PSLMQKAVDSIINGSTKWSTEFAEELLSLVSMLVSSTPGSL 316


>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
            28960097-28960424,28960524-28960661,28960765-28961020,
            28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 396  TDPKR*HNIGLRESSG--AHHKNTPRRFKNVSHHP 494
            T P + H+I + ESS    HH N   + ++  HHP
Sbjct: 962  THPVQEHSISIEESSDHHEHHHNEEHKAEDCGHHP 996


>02_02_0310 - 8842286-8843314
          Length = 342

 Score = 23.8 bits (49), Expect(2) = 4.2
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = +3

Query: 135 RHHHHHVYE--FGR*ITRPVQRLVHARRGTSKDQCRSAGLRFQLNR--DALHCTERRRN* 302
           RHHHHH  +    R    P++R  H      + + R+       ++  D     E  R  
Sbjct: 226 RHHHHHHEDDHEQREEGAPMKRFRHHHEEEEESEMRTKRFHHHHHKDDDERELEEMARRW 285

Query: 303 MHR-METERLDHHR 341
           + + + + R+ HHR
Sbjct: 286 IRKALMSSRMHHHR 299



 Score = 23.0 bits (47), Expect(2) = 4.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +3

Query: 132 YRHHHHH 152
           +RHHHHH
Sbjct: 191 HRHHHHH 197


>01_05_0200 - 19196606-19197304
          Length = 232

 Score = 24.6 bits (51), Expect(2) = 4.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 129 LYRHHHHH 152
           LY HHHHH
Sbjct: 219 LYHHHHHH 226



 Score = 22.2 bits (45), Expect(2) = 4.4
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 138 HHHHHVYE 161
           HHHHH Y+
Sbjct: 221 HHHHHHYK 228


>11_04_0375 + 16933688-16933703,16936291-16937063
          Length = 262

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 259 SIGMLCIVQNADGTKCIEWRPNDLITI 339
           ++G L  +Q  DG+  IEWR N LI +
Sbjct: 6   ALGQLKAIQLLDGSNYIEWRNNVLINL 32


>03_02_0599 -
           9730204-9730314,9730766-9731549,9731631-9732051,
           9732139-9732385,9733730-9733921,9734071-9734204,
           9734316-9734477,9736162-9736200,9737507-9737825
          Length = 802

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 132 YRHHHHHVYEFGR*ITRPVQRLVHARRGTSKDQCRSAGL 248
           +  HHHHV+ +   +T+  Q+     RG+S  QC S+ +
Sbjct: 634 FMQHHHHVHYYVHVMTQQ-QQQPSIERGSSDAQCGSSNV 671


>01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820
          Length = 357

 Score = 22.6 bits (46), Expect(3) = 5.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 132 YRHHHHHVYE 161
           + HHHHH +E
Sbjct: 298 WHHHHHHHHE 307



 Score = 21.4 bits (43), Expect(3) = 5.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 117 FSG*LYRHHHHH 152
           FS   + HHHHH
Sbjct: 295 FSPWHHHHHHHH 306



 Score = 20.6 bits (41), Expect(3) = 5.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 141 HHHHVYEFGR*ITRPVQRL 197
           HHHH +     +  P QRL
Sbjct: 299 HHHHHHHHEPTLPTPPQRL 317


>12_01_0988 -
           10039187-10039243,10039356-10039649,10039838-10040202,
           10042916-10042931
          Length = 243

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 259 SIGMLCIVQNADGTKCIEWRPNDLITI 339
           ++G L  +Q  DG+  +EWR N LI +
Sbjct: 6   ALGQLKAIQLLDGSNYVEWRNNVLINL 32


>07_01_1173 + 11092482-11093465,11093552-11093914
          Length = 448

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +1

Query: 139 IIIIMSTSSGDELHDQYKDLFTQDGVLLKTSVGRPVSDFNSIGML 273
           + + +S    DE+ D+ +DL  +DG LL+  +G  V+   SI +L
Sbjct: 213 LTVSVSLRRRDEVGDELQDLAVEDGPLLERLLGHDVNWGPSIHVL 257


>06_03_0149 + 17260632-17260647,17263368-17264071
          Length = 239

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 259 SIGMLCIVQNADGTKCIEWRPNDLITI 339
           ++G L  +Q  DG+  +EWR N LI +
Sbjct: 6   ALGQLKAIQLLDGSNYVEWRNNVLINL 32


>01_06_1067 + 34258036-34258051,34264808-34265679
          Length = 295

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 262 IGMLCIVQNADGTKCIEWRPNDLITI 339
           +G L  +Q  DG+  +EWR N LI +
Sbjct: 5   VGQLKAIQLLDGSNYVEWRNNVLINL 30


>07_03_0264 -
           15958690-15958910,15959410-15959484,15959547-15959775,
           15960312-15960587,15962109-15962369,15962632-15962781,
           15963555-15963591,15963958-15964024,15964228-15964291,
           15964643-15964812,15965046-15965124,15965576-15965733,
           15965862-15966030,15966531-15966602,15966977-15967018,
           15967245-15967488,15968782-15968963
          Length = 831

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 120 SG*LYRHHHHHVYEFGR*ITRPVQ 191
           +G L RHHHHH +  G  + R +Q
Sbjct: 17  AGHLCRHHHHHHHRDGLVLARSLQ 40


>01_05_0197 + 19143582-19143618,19143814-19144523
          Length = 248

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
 Frame = +1

Query: 259 SIGMLCIVQNADGTKCIEWRPNDLITI----DSDTQDQEWAVVNTVGRRQRTLSGNITSD 426
           ++G L  +Q  DG+  +EWR N  I +    D   + Q    +N +G     L       
Sbjct: 13  ALGQLKAIQLLDGSNYVEWRNNVFINLAIREDPPEEPQPAEELNIIGEEYDNLMWAYNKK 72

Query: 427 YAN 435
            AN
Sbjct: 73  LAN 75


>12_01_0008 + 63393-64004
          Length = 203

 Score = 23.0 bits (47), Expect(2) = 9.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 132 YRHHHHHVY 158
           + HHHHH Y
Sbjct: 111 HHHHHHHPY 119



 Score = 22.6 bits (46), Expect(2) = 9.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 129 LYRHHHHH 152
           L+ HHHHH
Sbjct: 109 LHHHHHHH 116


>11_01_0009 + 67344-67955
          Length = 203

 Score = 23.0 bits (47), Expect(2) = 9.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 132 YRHHHHHVY 158
           + HHHHH Y
Sbjct: 111 HHHHHHHPY 119



 Score = 22.6 bits (46), Expect(2) = 9.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 129 LYRHHHHH 152
           L+ HHHHH
Sbjct: 109 LHHHHHHH 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,255,220
Number of Sequences: 37544
Number of extensions: 320716
Number of successful extensions: 983
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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