Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11d09
(568 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 33 0.22
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 25 0.54
SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07) 31 0.66
SB_35757| Best HMM Match : Extensin_2 (HMM E-Value=4.7) 30 1.5
SB_57710| Best HMM Match : bZIP_1 (HMM E-Value=0.32) 29 2.6
SB_57721| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_22705| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_19556| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_9621| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 28 6.1
SB_5574| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.7
SB_19660| Best HMM Match : ATP-synt_8 (HMM E-Value=3.2) 23 7.7
SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_21830| Best HMM Match : No HMM Matches (HMM E-Value=.) 23 9.6
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 32.7 bits (71), Expect = 0.22
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Frame = +3
Query: 135 RHHHHHVYEFGR*ITRPVQRLVHARRGTSKDQCRSAGLRFQLNRDALHCTERRRN*MHRM 314
R H H R + ++R S+ + RS+ L R + R R+ R
Sbjct: 273 RKHRHRSRSSSLSSRRRSKHKRKSKRDRSRSRDRSSSKSKSLRRSKKYSRSRSRSSERRR 332
Query: 315 ETE-RLDHHRFRHSRSRMGRC*YRWSQTTDPKR*HNIG 425
+ R HR+R SRSR R +R S +T P R + G
Sbjct: 333 RSRSRSTEHRYR-SRSRSPRRKHRRSTSTSPSRRYRSG 369
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 25.4 bits (53), Expect(2) = 0.54
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 138 HHHHHVYEFGR*ITRP 185
HHHHH + + I RP
Sbjct: 249 HHHHHHHRYAMLINRP 264
Score = 24.6 bits (51), Expect(2) = 0.54
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 129 LYRHHHHH 152
LY HHHHH
Sbjct: 232 LYHHHHHH 239
>SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)
Length = 1127
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 355 DQEWAVVNTVGRRQRTLSGNITSDYANLRARIIKIPLDDLKTFRITRNNQQMQFSTK 525
D+ W+ + V R L+ ++TS+ A++I + +TR + +++STK
Sbjct: 517 DRHWSRASAVQTATRVLTSSVTSEKEGCFAQVITSGVSVPSALAVTRTSSHLRWSTK 573
>SB_35757| Best HMM Match : Extensin_2 (HMM E-Value=4.7)
Length = 211
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 176 YTTSTKTCSRKTGYF*RPVSVGRSPISTQSGCSALYRTP 292
Y + C+ T + PVSV SPIS + ++Y +P
Sbjct: 163 YNSPISVCNSLTSVYNSPVSVYNSPISVYNSSISVYNSP 201
>SB_57710| Best HMM Match : bZIP_1 (HMM E-Value=0.32)
Length = 584
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = -1
Query: 556 GNRTYSARLPVSSRTAFVGCYG*CETFLNRLGVFL*CAPEDSRNPMLCYRLGSVVCDQ 383
G+RT S P ++ +A G G E + +G E+ +PM CYR+ S V DQ
Sbjct: 331 GSRTGSPAAPTNAASASPGKSGGPEERQSPMGSENPNDSEERVDPMSCYRMMSTVRDQ 388
>SB_57721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 503 WLLRVMRNVFKSSRGIFMMRARRFA*SDVMLPLRVRCLRPTVLTTAHS 360
W+ V+ + SRG F + RR A + +LP+ R L P +T HS
Sbjct: 110 WVFGVLSTAYSPSRGYFQLVPRRDA--ETLLPIIQRALLPG--STVHS 153
>SB_22705| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 503 WLLRVMRNVFKSSRGIFMMRARRFA*SDVMLPLRVRCLRPTVLTTAHS 360
W+ V+ + SRG F + RR A + +LP+ R L P +T HS
Sbjct: 12 WVFGVLSTAYSPSRGYFQLVPRRDA--ETLLPIIQRALLPG--STVHS 55
>SB_19556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 503 WLLRVMRNVFKSSRGIFMMRARRFA*SDVMLPLRVRCLRPTVLTTAHS 360
W+ V+ + SRG F + RR A + +LP+ R L P +T HS
Sbjct: 279 WVFGVLSTAYSPSRGYFQLVPRRDA--ETLLPIIQRALLPG--STVHS 322
>SB_9621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 498 QPTNAVLDETGSLAEYVLFPTW 563
+P+N LD +G+L Y+LF W
Sbjct: 31 EPSNVALDCSGALVAYILFRLW 52
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 27.9 bits (59), Expect = 6.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 132 YRHHHHHVYEFGR 170
+RHHHHH +E+ R
Sbjct: 337 HRHHHHHHHEYNR 349
>SB_5574| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 201 HARRGTSKDQCRSAGLRFQLNRD-ALHCTERRRN*MHRMETERLDHHRFRH 350
H T++ R+A +L++D A+H T R R++T+R H RH
Sbjct: 278 HGSTRTARYTIRTAQYATRLDKDRAIHDTTRTARYTTRLDTDRTIHDTARH 328
>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 24.6 bits (51), Expect(2) = 6.7
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +3
Query: 132 YRHHHHHVYE 161
+RHHHHH +E
Sbjct: 281 HRHHHHHHHE 290
Score = 21.4 bits (43), Expect(2) = 6.7
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = +3
Query: 129 LYRHHHHH 152
LY HHHH
Sbjct: 279 LYHRHHHH 286
>SB_19660| Best HMM Match : ATP-synt_8 (HMM E-Value=3.2)
Length = 178
Score = 23.4 bits (48), Expect(2) = 7.7
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +3
Query: 135 RHHHHHVY 158
+HHHHH Y
Sbjct: 155 KHHHHHYY 162
Score = 22.6 bits (46), Expect(2) = 7.7
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +3
Query: 138 HHHHHVYEF 164
HHHH+ Y F
Sbjct: 157 HHHHYYYRF 165
>SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1430
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = -3
Query: 308 MHLVPSAFCTMQSIPIELKSETGRPTLVFRSTPSCVNKSLYWSCNSSPELVDMMMMMTI 132
+HL + CT +P+ + PTLV S+P+ + P +V+ ++ M +
Sbjct: 738 VHLQKVSQCTDCKMPVSNLARVFGPTLVGHSSPNVEPVDMLQQTKLQPRVVERLLAMPV 796
>SB_21830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 23.4 bits (48), Expect(2) = 9.6
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +3
Query: 96 LCCDCVYFSG*LYRHHHHH 152
+C + + Y HHHHH
Sbjct: 186 ICYSVSFQNSNRYHHHHHH 204
Score = 22.2 bits (45), Expect(2) = 9.6
Identities = 5/8 (62%), Positives = 7/8 (87%)
Frame = +3
Query: 132 YRHHHHHV 155
+ HHHHH+
Sbjct: 199 HHHHHHHI 206
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,173,007
Number of Sequences: 59808
Number of extensions: 394867
Number of successful extensions: 1101
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -