Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11d09
(568 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26880.1 68415.m03225 MADS-box family protein 28 5.0
At1g52800.1 68414.m05968 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 5.0
At1g79580.3 68414.m09279 no apical meristem (NAM) family protein... 23 7.6
At1g79580.2 68414.m09278 no apical meristem (NAM) family protein... 23 7.6
At1g79580.1 68414.m09277 no apical meristem (NAM) family protein... 23 7.6
At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein ... 27 8.7
At3g28050.1 68416.m03501 nodulin MtN21 family protein similar to... 27 8.7
At2g36710.1 68415.m04504 pectinesterase family protein contains ... 23 9.8
>At2g26880.1 68415.m03225 MADS-box family protein
Length = 184
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 203 VNKSLYWSCNSSPELVDMMMMMTIQSPAKIHTITT*VRSNNIEFYAIISW 54
VN+ L SC + E V +MM +Q +IH + N E Y ++S+
Sbjct: 14 VNEKLIKSCKKNKEYVSNELMMQLQRGRRIHDL------NLSEIYTLLSY 57
>At1g52800.1 68414.m05968 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to GS-AOP loci [GI:16118889,
GI:16118887, GI:16118891, GI:16118893]; contains PF03171
2OG-Fe(II) oxygenase superfamily domain
Length = 314
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +1
Query: 259 SIGMLCIVQNADGTKCIEWRPNDLITIDSDTQDQEWAVVNTVGRRQRTLSGNITSDYANL 438
SI M Q+ D T ND+ ++ ++D EW + + ++G+I+ ++N
Sbjct: 180 SISMPAFPQHTDKTFLSILHQNDVNGLEVKSKDGEWISLQLPPKSYVVMAGDISMGWSND 239
Query: 439 RAR 447
R R
Sbjct: 240 RIR 242
>At1g79580.3 68414.m09279 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 23.4 bits (48), Expect(2) = 7.6
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +3
Query: 141 HHHHVYEFGR*ITRPVQRLVH 203
HHHH + GR I P+ +
Sbjct: 217 HHHHHHHIGRQIHMPLHEFAN 237
Score = 22.2 bits (45), Expect(2) = 7.6
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +3
Query: 138 HHHHHVY 158
HHHHH Y
Sbjct: 181 HHHHHQY 187
>At1g79580.2 68414.m09278 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 23.4 bits (48), Expect(2) = 7.6
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +3
Query: 141 HHHHVYEFGR*ITRPVQRLVH 203
HHHH + GR I P+ +
Sbjct: 217 HHHHHHHIGRQIHMPLHEFAN 237
Score = 22.2 bits (45), Expect(2) = 7.6
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +3
Query: 138 HHHHHVY 158
HHHHH Y
Sbjct: 181 HHHHHQY 187
>At1g79580.1 68414.m09277 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 23.4 bits (48), Expect(2) = 7.6
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +3
Query: 141 HHHHVYEFGR*ITRPVQRLVH 203
HHHH + GR I P+ +
Sbjct: 217 HHHHHHHIGRQIHMPLHEFAN 237
Score = 22.2 bits (45), Expect(2) = 7.6
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +3
Query: 138 HHHHHVY 158
HHHHH Y
Sbjct: 181 HHHHHQY 187
>At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein low
similarity to Golgi-specific DHHC zinc figer protein
[Mus musculus] GI:21728103; contains Pfam profile
PF01529: DHHC zinc finger domain
Length = 477
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +3
Query: 132 YRHHHHHVYEFGR*ITRPVQRLVHARRGTSKDQ 230
+ HHHHH ++ I P G++KD+
Sbjct: 380 HHHHHHHQHQHNEGIIPPFDPFFTNEIGSNKDE 412
>At3g28050.1 68416.m03501 nodulin MtN21 family protein similar to
MtN21 [Medicago truncatula] GI:2598575; contains Pfam
profile PF00892: Integral membrane protein
Length = 367
Score = 27.1 bits (57), Expect = 8.7
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = -3
Query: 335 VIKSFGLHSMHLVPSAFCTMQSIPIELKSETGRPTLVFRSTPSCVNKSL-YWSCN-SSPE 162
++ S+GL ++ L+PS FC+ +S + + + +V C + + Y N SSP
Sbjct: 44 IVYSYGLAALLLLPSLFCSFRSRTLPPMNFSILYKIVLLGIIGCCSNIMGYTGINYSSPT 103
Query: 161 LVDMMMMMTIQSPAKIHTITT*VRSNNIEF 72
L + +T PA + R ++ F
Sbjct: 104 LASAISNLT---PAFTFLLAVVFRMESVSF 130
>At2g36710.1 68415.m04504 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 407
Score = 22.6 bits (46), Expect(2) = 9.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 117 FSG*LYRHHHHH 152
F G + HHHHH
Sbjct: 47 FFGHKHHHHHHH 58
Score = 22.6 bits (46), Expect(2) = 9.8
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +3
Query: 132 YRHHHHHVY 158
+ HHHHH Y
Sbjct: 57 HHHHHHHHY 65
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,425,299
Number of Sequences: 28952
Number of extensions: 259438
Number of successful extensions: 811
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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