Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d06
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0109 - 15333228-15334793,15335255-15335392,15335496-153357...    31   0.82 
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638...    30   1.1  
06_01_0325 - 2366193-2366367,2367063-2367122,2367323-2367463,236...    30   1.4  
08_01_0182 - 1534448-1534557,1534925-1535987                           29   2.5  
05_07_0101 - 27690927-27691208,27691695-27692474                       29   2.5  
11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973...    28   4.4  
06_01_0472 - 3346195-3346310,3346587-3346878                           27   7.6  

>02_03_0109 -
           15333228-15334793,15335255-15335392,15335496-15335771,
           15336357-15336422,15338140-15338487
          Length = 797

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 240 PLEYSAESDAGNTAVFWLH-SAAALRNADGSGERPLPV 350
           PL + A SD+    +  LH SAA L   DGSG  P+ V
Sbjct: 488 PLHFFAASDSAEALLMTLHYSAADLNRPDGSGLTPVMV 525


>09_04_0365 -
           16962608-16963174,16963301-16963486,16963824-16963896,
           16964307-16964497,16964982-16965198,16965394-16965797,
           16966593-16966658,16966668-16966721,16966945-16967079,
           16967194-16967391,16967734-16967918,16968990-16969527
          Length = 937

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +3

Query: 126 RVSIASRIRRDRDGFTSREPARLPPDTVPHQLDQQPEQPLEYSAESDAGNTAVFW---LH 296
           +V + SR+   R      +PA  PP   P    + P++P   S   +  + +  W   L 
Sbjct: 4   QVGLLSRLLLRRHVHRRSKPATAPPPPPPPTPPRPPQKPEPVSIHGETWHDSYAWMGALS 63

Query: 297 SAAALRNAD 323
            AAA+R+ D
Sbjct: 64  DAAAMRHMD 72


>06_01_0325 -
           2366193-2366367,2367063-2367122,2367323-2367463,
           2368175-2368288,2368444-2368475,2368736-2368793,
           2369263-2369434,2369584-2370334,2370743-2371036
          Length = 598

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 58  RSILLCFAVLLVERADAMIPAYSVSALRLAFDEIATVLPVANQL 189
           RS+  C   LLV  A   + A +++   LAF+   +++PV N++
Sbjct: 153 RSLAACQGALLVVDAAQGVQAQTIANFYLAFESNLSIIPVINKI 196


>08_01_0182 - 1534448-1534557,1534925-1535987
          Length = 390

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 264 DAGNTAVF-WLHSAAALRNADGSGERPLPVHQCV 362
           D G  AVF   ++A ALR  DG G  P P   CV
Sbjct: 293 DLGGHAVFIGKNNAVALRGDDGGGATPAPRANCV 326


>05_07_0101 - 27690927-27691208,27691695-27692474
          Length = 353

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 207 VPHQ--LDQQ-PEQPLEYSAESDAGNTAVFWLHSAAALRNADGSGERPLP 347
           +PHQ  LD   P +PL Y ++S   N  V WL        A  SG   LP
Sbjct: 79  LPHQEKLDMSGPARPLGYGSKSIGSNGDVGWLEYLLLSAGAASSGGAALP 128


>11_06_0047 +
           19595904-19596185,19596284-19596424,19597195-19597307,
           19597970-19598049,19598557-19598720,19598931-19599060,
           19599155-19599254,19599452-19599500,19599775-19599849,
           19600026-19600124,19600745-19600823,19600897-19601045,
           19601334-19601393,19601490-19601684
          Length = 571

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = +1

Query: 331 ASVLFLYISVLISLFRSNVLAAP 399
           AS+LF ++ VLI+LF ++++ AP
Sbjct: 283 ASILFCFLIVLITLFLNSIIFAP 305


>06_01_0472 - 3346195-3346310,3346587-3346878
          Length = 135

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 234 EQPLEYSAESDAGNTAVFWLHSAAALRNADGSGERPLPV 350
           ++P E    ++ G  ++   H AA +R  DGS ER  PV
Sbjct: 27  QRPGETRRNTERGAMSLTRWHDAAQIRLGDGSRERKRPV 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,929,783
Number of Sequences: 37544
Number of extensions: 178608
Number of successful extensions: 691
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)