Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d06
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.63 
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_32463| Best HMM Match : Flocculin (HMM E-Value=6.8)                 29   2.6  
SB_10694| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_33614| Best HMM Match : Ribosomal_S12 (HMM E-Value=6.8)             29   3.4  
SB_12669| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_982| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.8  
SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.8  

>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 26/84 (30%), Positives = 32/84 (38%)
 Frame = +3

Query: 129 VSIASRIRRDRDGFTSREPARLPPDTVPHQLDQQPEQPLEYSAESDAGNTAVFWLHSAAA 308
           V   +R  R+    T R P   PP   P  +D   + P E S+ESD+GN           
Sbjct: 260 VRAQTRQHRNESDPTQRSPRSSPP---PFTIDVVIDTPNESSSESDSGNRNTQPTRRPLR 316

Query: 309 LRNADGSGERPLPVHQCVDFAVSF 380
                G G RP   H     A SF
Sbjct: 317 RLGTTGYGPRPGVGHSVSLPAASF 340


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 58   RSILLCFAVLLVERADAMIPAYSVSALRLAFDEIATVLPVANQL 189
            RS+  C  V+L+  A   + A +VS   LAF+   T++P  N++
Sbjct: 2005 RSLAACQGVVLLVDAAQGVQAQTVSNFFLAFNSELTIIPALNKI 2048


>SB_32463| Best HMM Match : Flocculin (HMM E-Value=6.8)
          Length = 107

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 182 FATGKTVAISSNARRNADTEYAGIIASARSTNNTAKHNKI 63
           +  G    + SN      T+    ++ A S NNTAK N++
Sbjct: 61  YCNGGLELVESNHSNGPTTDMTSCVSMAESNNNTAKENEL 100


>SB_10694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +1

Query: 25  YSALVFF*IMIRSILLCFAVLLVERADAMIPAYSVSALRLAFDEIATVLPVANQ 186
           + ++ F    + + LL   +++ +RA  MIPA+      +AF+ + T L  A++
Sbjct: 31  FMSVTFLRAPLTTPLLIETIVVFQRAVTMIPAHDSPVASMAFNHMGTKLATASE 84


>SB_33614| Best HMM Match : Ribosomal_S12 (HMM E-Value=6.8)
          Length = 201

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +3

Query: 135 IASRIRRDRDGFTSREPARLPPDTVPHQLDQQPEQPLE---YSAESDAGNTAVFWLHSAA 305
           I +R + D  G+    P R  PD   ++  ++ E+PL    +S  S    T+  W+    
Sbjct: 18  IGNRTKPDCPGYQGF-PHRRRPDNATNECRRKAEKPLAPRTFSIFSRKRQTSNLWVSRGK 76

Query: 306 ALRNADGSGERPL 344
           ALR++  S  R L
Sbjct: 77  ALRSSSQSAVRVL 89


>SB_12669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 375 KQRNQHTDVQEEDARQIRQRCVKQRQSATK 286
           K R +HT  Q+ED ++ RQ+ +K+R  + K
Sbjct: 283 KSRIEHTQKQKEDRQKQRQKNLKERSLSKK 312


>SB_982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 180 EPARLPPDTVPHQLDQQPEQPLEYSAESDAGNTA 281
           EP+  PP  VP Q  ++P  P   S ES++ +++
Sbjct: 277 EPSS-PPRLVPRQRSKEPSSPARSSVESNSSSSS 309


>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 108  DDTGVLRVSIASRIRRDRDGFTSREPARLPPD 203
            DD G++RV    R+RR   G+  R P  LP D
Sbjct: 1172 DDQGLIRVG--GRLRRADLGYIERHPVLLPND 1201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,858,660
Number of Sequences: 59808
Number of extensions: 200205
Number of successful extensions: 678
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)