Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d06
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical pr...    31   0.42 
AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical ...    28   3.9  
Z69360-6|CAA93282.1|  599|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AC024826-7|AAF60797.1|  305|Caenorhabditis elegans Hypothetical ...    27   9.1  

>L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical
           protein ZK1236.1 protein.
          Length = 645

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 13/44 (29%), Positives = 28/44 (63%)
 Frame = +1

Query: 58  RSILLCFAVLLVERADAMIPAYSVSALRLAFDEIATVLPVANQL 189
           RS+ +C  +LL+  A+  + A +++   LAF++   ++PV N++
Sbjct: 121 RSLAVCDGILLLVAANQGVQAQTIANFWLAFEKNIQIIPVINKI 164


>AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical
           protein C09E7.5 protein.
          Length = 496

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -1

Query: 372 QRNQHTDVQEEDARQIRQRCVKQRQSATKIRQYCRRQ 262
           + N H  +Q E+ + + Q  + Q+Q++T   ++C ++
Sbjct: 284 EANAHLSIQNEEQKNLIQNLLDQQQTSTSNAKWCSKK 320


>Z69360-6|CAA93282.1|  599|Caenorhabditis elegans Hypothetical
           protein F25H8.6 protein.
          Length = 599

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 369 RNQHTDVQEEDARQIRQRCVKQRQS 295
           +N+ TDV+EED  Q R R +  R S
Sbjct: 294 KNEPTDVEEEDLEQKRSRDILHRPS 318


>AC024826-7|AAF60797.1|  305|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.4 protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
 Frame = +3

Query: 177 REPARLPPDTVPHQLDQQPEQPL---EYSAESDAGNTAVFWLHSAAALRNADGSGE---- 335
           +E +  PP   P   D   E+PL   E   + D  +   F +         D SGE    
Sbjct: 130 KEQSTAPPPAAPEDSDDDDEEPLDLDELGLDDDEEDPNRFVVEKKPLAAGNDNSGEVEKV 189

Query: 336 RPLPVHQCVD 365
           R   +H C D
Sbjct: 190 RTYDLHICYD 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,322,696
Number of Sequences: 27780
Number of extensions: 146471
Number of successful extensions: 535
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)