Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d06
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    28   0.055
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   6.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.4  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 28.3 bits (60), Expect = 0.055
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 364 STH*CTGRGRSPDPSALRKAAAECNQNTAVLPASDSALYSR 242
           + H   GRGRS   S    A A   Q+++++ + DSA + R
Sbjct: 361 AAHKMHGRGRSGKKSKFNAAVAAAVQSSSIVSSPDSARHQR 401


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +3

Query: 144 RIRRDRDGFTSREPARLPPDTVPHQLDQQPEQPLEYSAESDAGN 275
           R+RR+ +     EP    P  +P      P    E  +E++ GN
Sbjct: 59  RLRREAE--PKAEPGNNRPIYIPQPRPPHPRLRREAESEAEPGN 100


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 218 LMRNGIRRQASWFATGKTVAISSN 147
           +MR G+ RQA +    K+V I  N
Sbjct: 200 MMRTGLSRQAEYTDFLKSVPIFKN 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,565
Number of Sequences: 438
Number of extensions: 1912
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)