Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11d05
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    36   0.004
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    27   1.7  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    27   2.3  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    26   4.0  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   4.0  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   5.2  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   5.2  
SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces p...    26   5.2  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   9.1  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   9.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.1  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   9.1  

>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 434 LKLYQNKENTIVPLHWFGVLVPQNLHMAQKIFQTTLSYVVECSNIQLQLEE-NMKNINAL 610
           L+LY    + IVP  W G +  +   +  K F T L   + C  +   ++E N++NI+ +
Sbjct: 35  LRLYHELISVIVPTFWNGKINSEIDFLLAKCFSTLLGLKLLCVRLDNFVQEANLQNIHLV 94

Query: 611 RKYLNIISK 637
             YL ++ K
Sbjct: 95  TVYLELLEK 103


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 284 NVNNGSIHLAKSRYIMGQSSVSTTKLPT 367
           N +    + +KSRY+ G  S+STT L T
Sbjct: 424 NSSRFGAYFSKSRYVEGSGSMSTTPLAT 451


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
 Frame = +2

Query: 239 DLLEQKIKCELNIESNVNNGSIHLAKSRYIMGQSSVSTTKLPTESSPDFSASIMCKTIEE 418
           D+L QKI   L + SN NN + +   +  +    +  T          F ++I+ ++  +
Sbjct: 306 DILSQKISSVLEVLSNNNNSNNNNGNNGTVPNAKTFFTPPSSITQQVPFPSTIIPESTVK 365

Query: 419 DGMTK----LKLYQNKENTIVPLHWFGVLVP 499
           +  T+      L  N + T  P H   V+ P
Sbjct: 366 ENSTRPYVNSHLVANDKITATPFHSEAVVSP 396


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -3

Query: 257 FFALKGQVVSKLLYPINRELVQYLTWCNVDCREILTYITLNC*GKIKMVYSTFSI 93
           FFA K      L Y I+  L Q L W  V+ R  + +  L C    ++V S  ++
Sbjct: 278 FFAAKSDTPVNLEY-ISVVLNQILDWTPVELRHSIFFCCLRCLSSSRIVNSETNV 331


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 383 FSASIMCKTIEEDGMTKLKL 442
           F+ +  C T+ EDG+TKL L
Sbjct: 72  FACTFKCFTMTEDGLTKLNL 91


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 572 LQLEENMKNINALRKYLNIISK 637
           L+LEE  K +N + KY+ ++ K
Sbjct: 101 LELEEQNKCLNTVNKYMEVVKK 122


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 239  DLLEQKIKCELNIESNVNNGSIHLAKSRYIMGQSSVSTTKLPTESS 376
            D+ +  IK ++N ESN +NG   +  +  +  Q+     KLP++++
Sbjct: 987  DVSQSDIKVDINRESNSDNGET-ITGTHDVYRQTDNPEIKLPSDTA 1031


>SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 111

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +2

Query: 338 SSVSTTKLPTE--SSPDFSASIMCKTIEEDGMTKLKLYQNKENTIVPLHWFGV 490
           SS    KLP +  S    +A   C   E+DGMT +K      + ++ + W  +
Sbjct: 59  SSTLVQKLPEDHPSRGVHAAHAACWNCEKDGMTTIKESGEAIDVVLSIMWISI 111


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 60  YLFKIIFSSLFDRKCAVYHF-NFPSTIQSYIGKDFSTINIAPC 185
           Y+ +I   SLF   C ++ F  +PSTI+         + IA C
Sbjct: 70  YILQIFLFSLFG-SCMLFRFIKYPSTIKDSWNHHLEKLFIATC 111


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +2

Query: 251 QKIKCELNIESNVNNGSIHLAKSRYIMGQSSVSTTKLPTESSPDFSASIMCKTIEEDGMT 430
           QK   E   E+NV+NG   +++S      +  S T++  +S+P+ + +     +E  G  
Sbjct: 179 QKSPVENETETNVDNGDTKISES------NEKSGTEVEQQSAPNSNGNEEVNNLEPVGQN 232

Query: 431 KLKLYQNKE 457
           + K    KE
Sbjct: 233 ESKQEPPKE 241


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +2

Query: 263  CELNIESNVNNGSIHLAKSRYIMGQSSVSTTKLPTESSPDFSASIMCKTIEE 418
            C L+  +N++N        RY   Q +V+  ++ T  + DF + ++  T+ +
Sbjct: 1567 CPLSETANISNQLADPFGFRYTYSQHTVNKIQIITNITLDFDSFVLRTTVND 1618


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 347 STTKLPTESSPDFSASI 397
           S++ +PT SS DFS+SI
Sbjct: 541 SSSSIPTSSSSDFSSSI 557


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 279 SMFNSH-FIFCSKRSSCLKITLSNK 208
           SMF+SH FI C++ S   K+ L  K
Sbjct: 628 SMFHSHKFILCARSSFLRKLLLQKK 652


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,703
Number of Sequences: 5004
Number of extensions: 54239
Number of successful extensions: 169
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)